CmoCh04G003320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Clavata3/esr-related 25 family protein
Location	Cmo_Chr04 : 1622553 .. 1623596 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTGTCAATAATAAACAAACAGGCAAGGCAGGGTTTGAGAAAAGTGCAACAGAATCCACCAACCCTATAAAGAAAAAAAAGACAACTCCCTAATTAAACATGCACTCCCCTTTTCTAAACAAACTCCTCTCCTTCTCCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTCTTCTTCTTCTCATTGCTTGACGCTACTTAAGATAACATACTTCGACCTATCGCCGTTGTCATCTTTACCTCTCGAGTCGTAAAGTTAACTAATCTCTCTCGACGTACATAGACAGAAGTATATATATATATATATATATTTATGAGAAGTGAAGGTAGTTGTTGCTCATTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCGGAGAACGGTCGATGGCGAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGGTGAATTTTTTCGAAGATCAACTTTAACATAGCAATGATATCGAGTTGTGTTCAAATTTCTTACTGGACTTTTGTGAGATCCCACGCCATTTTGAGAAGAGAATGAAACATTTTTTATGAGGGTGTGAAAATTTTTTCCTAGCATATATCTATTGATTTTAAGCGAGTTAATATTTGTTGGGTTTGGTTTGCAGGCGAATGGGAGTAAAAGGACGGCCACCCGCCTGACCTTAGGCTTAGGCTTAGGCTTCCTCCAGTTTGAGAGGAACTCATGCCTCTTGGTTCTTCTCAACGTTACCCTTCAAACAACATGCCTCTTATTTGTATTCTAATTTCAATAATCCAAAATAAAAAACATCTGGATTGTACATATCTCCCTCTCTCTATGTGTATATATATGGGCTTGGGCTATTTATTTGTATTCTAATTTTGGTATAGCTTTTAGAAAAGAGAAAAAGGAAAGGAAATAGTTGTTCAAATGAA

mRNA sequence

TGTGTGTCAATAATAAACAAACAGGCAAGGCAGGGTTTGAGAAAAGTGCAACAGAATCCACCAACCCTATAAAGAAAAAAAAGACAACTCCCTAATTAAACATGCACTCCCCTTTTCTAAACAAACTCCTCTCCTTCTCCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTCTTCTTCTTCTCATTGCTTGACGCTACTTAAGATAACATACTTCGACCTATCGCCGTTGTCATCTTTACCTCTCGAGTCGTAAAGTTAACTAATCTCTCTCGACGTACATAGACAGAAGTATATATATATATATATATATTTATGAGAAGTGAAGGTAGTTGTTGCTCATTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCGGAGAACGGTCGATGGCGAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGGCGAATGGGAGTAAAAGGACGGCCACCCGCCTGACCTTAGGCTTAGGCTTAGGCTTCCTCCAGTTTGAGAGGAACTCATGCCTCTTGGTTCTTCTCAACGTTACCCTTCAAACAACATGCCTCTTATTTGTATTCTAATTTCAATAATCCAAAATAAAAAACATCTGGATTGTACATATCTCCCTCTCTCTATGTGTATATATATGGGCTTGGGCTATTTATTTGTATTCTAATTTTGGTATAGCTTTTAGAAAAGAGAAAAAGGAAAGGAAATAGTTGTTCAAATGAA

Coding sequence (CDS)

ATGAGAAGTGAAGGTAGTTGTTGCTCATTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCGGAGAACGGTCGATGGCGAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGGCGAATGGGAGTAAAAGGACGGCCACCCGCCTGA

Homology

[Close]

BLAST of CmoCh04G003320 vs. TrEMBL
Match: A0A0A0KQF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARS---EFEGS 60
           M+S  SCC FSY KVLLGAV VG+FVWLL+VG   S      +T SW AA     + EG 
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61  H-MKQAKEL------------NFMSKVKVPKGPDPIHNRRMGVKGRPP 93
           H MK+A++             NFMSKV+VPKGPDPIHNRR+GVKG PP
Sbjct: 61  HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of CmoCh04G003320 vs. TrEMBL
Match: B9HU81_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s04900g PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.0e-09
Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTT---SWPAARSEFEGS 60
           M   GS CS S FKVLLG +A  +FV LL+VG  +SG  S   T+   S  A +++ +  
Sbjct: 1   MGCSGSSCSLS-FKVLLGGIATVVFVMLLLVGALESGATSKMTTSRLNSVQATQNDLKDD 60

Query: 61  HMKQA-----------KELNFM-SKVKVPKGPDPIHNRRMGVKGRPP 93
           H K              +LN+M SK +VP GPDPIHNRR G   RPP
Sbjct: 61  HEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPP 106

[Close]

BLAST of CmoCh04G003320 vs. TrEMBL
Match: A0A067H4U1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034371mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-08
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 13 FKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMKQAK-------EL 72
          FK L GA+AVG  + LL++G  +SG  S +  T+  +  +      + + K       +L
Sbjct: 7  FKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDL 66

Query: 73 NFMSKVKVPKGPDPIHNRRMGVKGRPP 93
          N+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 67 NYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of CmoCh04G003320 vs. TrEMBL
Match: V4VGV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033175mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-08
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 13 FKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMKQAK-------EL 72
          FK L GA+AVG  + LL++G  +SG  S +  T+  +  +      + + K       +L
Sbjct: 7  FKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDL 66

Query: 73 NFMSKVKVPKGPDPIHNRRMGVKGRPP 93
          N+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 67 NYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of CmoCh04G003320 vs. TrEMBL
Match: A0A0B2R4Y5_GLYSO (CLAVATA3/ESR (CLE)-related protein 25 OS=Glycine soja GN=glysoja_025429 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1


Query: 3  SEGSCCSF--SYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFE----- 62
          S GS  SF  S+FK LL    VG+ V LL++G   SGE +   TT W   R + E     
Sbjct: 6  SSGSSSSFPPSFFKALL---VVGL-VCLLVLGSLGSGEGTRHPTTQWSQERVKHERVVGR 65

Query: 63 GSHMKQAK-ELNFMSKVKVPKGPDPIHNRRMGVKGRPP 93
             +  A+ + N+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 66 DKPVDSAELDFNYMSKRRVPNGPDPIHNRRAGNSGRPP 99

[Close]

BLAST of CmoCh04G003320 vs. NCBI nr
Match: gi|778705215|ref|XP_011655655.1| (PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-19
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARS---EFEGS 60
           M+S  SCC FSY KVLLGAV VG+FVWLL+VG   S      +T SW AA     + EG 
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61  H-MKQAKEL------------NFMSKVKVPKGPDPIHNRRMGVKGRPP 93
           H MK+A++             NFMSKV+VPKGPDPIHNRR+GVKG PP
Sbjct: 61  HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of CmoCh04G003320 vs. NCBI nr
Match: gi|224107855|ref|XP_002314627.1| (hypothetical protein POPTR_0010s04900g [Populus trichocarpa])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTT---SWPAARSEFEGS 60
           M   GS CS S FKVLLG +A  +FV LL+VG  +SG  S   T+   S  A +++ +  
Sbjct: 1   MGCSGSSCSLS-FKVLLGGIATVVFVMLLLVGALESGATSKMTTSRLNSVQATQNDLKDD 60

Query: 61  HMKQA-----------KELNFM-SKVKVPKGPDPIHNRRMGVKGRPP 93
           H K              +LN+M SK +VP GPDPIHNRR G   RPP
Sbjct: 61  HEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPP 106

[Close]

BLAST of CmoCh04G003320 vs. NCBI nr
Match: gi|743927806|ref|XP_011008087.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Populus euphratica])

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTT---SWPAARSEFEGS 60
           M   GS CS S FK+LLG VA  +FV LL+VG  + G  S   T+   S  A +++ +  
Sbjct: 1   MGGSGSSCSLS-FKLLLGGVATVVFVMLLLVGALEGGATSKMTTSRLNSVQATKNDLKDD 60

Query: 61  HMKQA-----------KELNFM-SKVKVPKGPDPIHNRRMGVKGRPP 93
           H K              +LN+M SK +VP GPDPIHNRR G   RPP
Sbjct: 61  HEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPP 106

[Close]

BLAST of CmoCh04G003320 vs. NCBI nr
Match: gi|567892017|ref|XP_006438529.1| (hypothetical protein CICLE_v10033175mg [Citrus clementina])

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 13 FKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMKQAK-------EL 72
          FK L GA+AVG  + LL++G  +SG  S +  T+  +  +      + + K       +L
Sbjct: 7  FKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDL 66

Query: 73 NFMSKVKVPKGPDPIHNRRMGVKGRPP 93
          N+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 67 NYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of CmoCh04G003320 vs. NCBI nr
Match: gi|1009153815|ref|XP_015894831.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 12 YFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSH--MKQAKELNFMS 71
          + K+L  A+AV  F+W+L+VG  D+   S    ++     S+  G    ++   ++N+MS
Sbjct: 17 FSKLLFRALAVVGFIWILLVGTGDTKSASFVAESAGNIKDSDVVGREKLVRPQLDINYMS 76

Query: 72 KVKVPKGPDPIHNRRMGVKGRPP 93
          K +VP GPDPIHNRR G  GRPP
Sbjct: 77 KRRVPNGPDPIHNRRAGNSGRPP 99

The following BLAST results are available for this feature:

BLAST of CmoCh04G003320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF7_CUCSA	2.9e-19	55.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1	[more]
B9HU81_POPTR	8.0e-09	43.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s04900g PE=4 SV=1	[more]
A0A067H4U1_CITSI	3.1e-08	42.53	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034371mg PE=4 SV=1	[more]
V4VGV5_9ROSI	3.1e-08	42.53	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033175mg PE=4 SV=1	[more]
A0A0B2R4Y5_GLYSO	2.0e-07	45.92	CLAVATA3/ESR (CLE)-related protein 25 OS=Glycine soja GN=glysoja_025429 PE=4 SV=...	[more]

BLAST of CmoCh04G003320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705215\|ref\|XP_011655655.1\|	4.2e-19	55.56	PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus]	[more]
gi\|224107855\|ref\|XP_002314627.1\|	1.2e-08	43.93	hypothetical protein POPTR_0010s04900g [Populus trichocarpa]	[more]
gi\|743927806\|ref\|XP_011008087.1\|	3.4e-08	42.99	PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Populus euphratica]	[more]
gi\|567892017\|ref\|XP_006438529.1\|	4.4e-08	42.53	hypothetical protein CICLE_v10033175mg [Citrus clementina]	[more]
gi\|1009153815\|ref\|XP_015894831.1\|	2.2e-07	40.96	PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003320.1	CmoCh04G003320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34277	FAMILY NOT NAMED	coord: 1..92 score: 8.0
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 1..92 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003320	CmaCh04G003160	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003320	Csa5G604030	Cucumber (Chinese Long) v2	cmocuB718
CmoCh04G003320	MELO3C012043	Melon (DHL92) v3.5.1	cmomeB647
CmoCh04G003320	ClCG05G024840	Watermelon (Charleston Gray)	cmowcgB661
CmoCh04G003320	CSPI05G23180	Wild cucumber (PI 183967)	cmocpiB726
CmoCh04G003320	Lsi04G004970	Bottle gourd (USVL1VR-Ls)	cmolsiB674
CmoCh04G003320	Cp4.1LG01g03960	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003320	MELO3C012043.2	Melon (DHL92) v3.6.1	cmomedB737
CmoCh04G003320	CsaV3_5G032070	Cucumber (Chinese Long) v3	cmocucB0851
CmoCh04G003320	Cla97C05G106950	Watermelon (97103) v2	cmowmbB736
CmoCh04G003320	Bhi07G001335	Wax gourd	cmowgoB0907
CmoCh04G003320	CsGy5G022660	Cucumber (Gy14) v2	cgybcmoB630
CmoCh04G003320	Carg07995	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003320	Cucurbita moschata (Rifu)	cmocmoB465
CmoCh04G003320	Cucumber (Gy14) v1	cgycmoB0798
CmoCh04G003320	Cucurbita maxima (Rimu)	cmacmoB732
CmoCh04G003320	Watermelon (97103) v1	cmowmB700
CmoCh04G003320	Cucurbita pepo (Zucchini)	cmocpeB678
CmoCh04G003320	Silver-seed gourd	carcmoB1140