Csa5G604030 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G604030
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 22328313 .. 22329421 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTTTGAGAAAAGTGCAACAGAATCCACCAAAACCCTATAAAGAAAAAAAGAAAGCTCGCCCTAATTAAACATGCATCCCCTACCAAACAAACTAACAAAATAGTAATAACATCTCCTTCTTTCTTTCCCTTCCAATCCCCATACTACTTCTTCTCTTCATTGCTTTCATATCCATCCCGTTTTCATCCAATCATAAAACTAATTAACCACGACTCACTCTCGACATATACGTCTGAAGTAGATCATACATACACAATTAAATCTAGCTATATATATTTATGAAAAGTGTAGATAGCTGTTGCTATTTTTCTTACTTGAAGGTCTTGCTTGGTGCTGTGGTTGTGGGGCTGTTTGTATGGCTTTTGGTTGTTGGGTCATCCCCGCCACCACCAGGGAGAACGAAAAGCTGGCAGGCGGCGGCTGAGTCTGTTCATCAGGTCGAGGGAAGGCATGCCATGAAGGAAGCTGAGGATCAATTGGCCATTAACAACCATCCAAAGCTGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCAGACCCCATCCATAACAGGTATATATTATTTGAACACACTTTGCATTTAAGATTATTAAACTTATCAGGTATTATTATTTTAAAACCATGCGAGAAAAAAAAAACATTTTAATTTATTTAAATTATAAGTTTTGTTCAATTTAATCTTAAATTTCAAAATATCATAATTTTACTTTTGAAATTTCAATTTTTCATTGACTACTAGCTTGGTGGGTAAAAAATAAATAAATTCATCCATGTTACGTTTGGAATTTTGTACTGAAAGGTCACAATCTAGAGCATAGTGTTTTAGAAGATAAAAAGTGTCATAATTACTATTTGAAAAAAAATATTGGTTGGTTGTTAACAAAATCAATAAAGAGTTTGTATTGATATTTTTTTGTGTTATTATAAAAGAAATGTTTATTTTAGGAGTGATTTATGTTGCTGTTGAATATGTATATATATGTGTGTGTGTGTACTTGAATTGGCAGGAGAATTGGGGTGAAAGGAGGGCCTCCAAGAGGAGCTTAGGCTTTTTTGTACTCACGAAGGCATAGATTCCTTCCTCCACTTTTAA

mRNA sequence

ATGAAAAGTGTAGATAGCTGTTGCTATTTTTCTTACTTGAAGGTCTTGCTTGGTGCTGTGGTTGTGGGGCTGTTTGTATGGCTTTTGGTTGTTGGGTCATCCCCGCCACCACCAGGGAGAACGAAAAGCTGGCAGGCGGCGGCTGAGTCTGTTCATCAGGTCGAGGGAAGGCATGCCATGAAGGAAGCTGAGGATCAATTGGCCATTAACAACCATCCAAAGCTGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCAGACCCCATCCATAACAGGAGAATTGGGGTGAAAGGAGGGCCTCCAAGAGGAGCTTAG

Coding sequence (CDS)

ATGAAAAGTGTAGATAGCTGTTGCTATTTTTCTTACTTGAAGGTCTTGCTTGGTGCTGTGGTTGTGGGGCTGTTTGTATGGCTTTTGGTTGTTGGGTCATCCCCGCCACCACCAGGGAGAACGAAAAGCTGGCAGGCGGCGGCTGAGTCTGTTCATCAGGTCGAGGGAAGGCATGCCATGAAGGAAGCTGAGGATCAATTGGCCATTAACAACCATCCAAAGCTGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCAGACCCCATCCATAACAGGAGAATTGGGGTGAAAGGAGGGCCTCCAAGAGGAGCTTAG

Protein sequence

MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA*

Homology

[Close]

BLAST of Csa5G604030 vs. TrEMBL
Match: A0A0A0KQF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.3e-57
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60
           MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 109
           KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of Csa5G604030 vs. TrEMBL
Match: M5XZR3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013780mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 1


Query: 12  YLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINN 71
           +LK+  G + V  F+ +L+VG+     G TK+  + A +      + A     +   +  
Sbjct: 10  FLKLFFGTLAVMGFICVLLVGTLETQGGLTKTATSTAAAPESFSEKPADVVGRENKLV-- 69

Query: 72  HPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
           HP+L D N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 70  HPEL-DLNYMSKRRVPNGPDPIHNRRAGSSGRPP 100

[Close]

BLAST of Csa5G604030 vs. TrEMBL
Match: V4VGV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033175mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-07
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 14  KVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINNHP 73
           K L GA+ VG  + LL++G+     G + S     +S   ++   A+   +      +HP
Sbjct: 8   KALFGALAVGWLICLLLIGNLESG-GNSTSTLTTTQSTANLKRAEALGREK----FIDHP 67

Query: 74  KLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
           +L D N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 68  EL-DLNYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of Csa5G604030 vs. TrEMBL
Match: A0A067H4U1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034371mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-07
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 14  KVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINNHP 73
           K L GA+ VG  + LL++G+     G + S     +S   ++   A+   +      +HP
Sbjct: 8   KALFGALAVGWLICLLLIGNLESG-GNSTSTLTTTQSTANLKRAEALGREK----FIDHP 67

Query: 74  KLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
           +L D N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 68  EL-DLNYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of Csa5G604030 vs. TrEMBL
Match: A0A061EDD3_THECC (Clavata3/esr-related 26, putative isoform 1 OS=Theobroma cacao GN=TCM_010103 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 12  YLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSW--QAAAESVHQVEGRHAMKEAEDQLAI 71
           + K L G +VV  F+ +L+VG+       TK+      + S  +++  HA      +  I
Sbjct: 14  FSKALFGTLVVLGFILVLLVGTLQSEENETKTTLRTETSSSTGKLQ-EHAKVLGRGKSLI 73

Query: 72  NNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
           + HP+L D N+MSK RVP GPDPIHNRR G    PP
Sbjct: 74  DGHPQL-DLNYMSKRRVPNGPDPIHNRRAGNSRRPP 107

[Close]

BLAST of Csa5G604030 vs. NCBI nr
Match: gi|778705215|ref|XP_011655655.1| (PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.3e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60
           MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 109
           KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of Csa5G604030 vs. NCBI nr
Match: gi|1009153815|ref|XP_015894831.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1


Query: 2   KSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMK 61
           K+  SC    + K+L  A+ V  F+W+L+VG+     G TKS    AES   ++    + 
Sbjct: 11  KTTISC----FSKLLFRALAVVGFIWILLVGT-----GDTKSASFVAESAGNIKDSDVV- 70

Query: 62  EAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
              ++L     P+L D N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 71  -GREKLV---RPQL-DINYMSKRRVPNGPDPIHNRRAGNSGRPP 99

[Close]

BLAST of Csa5G604030 vs. NCBI nr
Match: gi|596197970|ref|XP_007223616.1| (hypothetical protein PRUPE_ppa013780mg [Prunus persica])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 1


Query: 12  YLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINN 71
           +LK+  G + V  F+ +L+VG+     G TK+  + A +      + A     +   +  
Sbjct: 10  FLKLFFGTLAVMGFICVLLVGTLETQGGLTKTATSTAAAPESFSEKPADVVGRENKLV-- 69

Query: 72  HPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
           HP+L D N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 70  HPEL-DLNYMSKRRVPNGPDPIHNRRAGSSGRPP 100

[Close]

BLAST of Csa5G604030 vs. NCBI nr
Match: gi|645229493|ref|XP_008221492.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 1


Query: 12  YLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINN 71
           +LK+  G + V  F+ +L+VG+     G TK+  + A +      + A     +   +  
Sbjct: 10  FLKLFFGTLAVMGFICVLLVGTLETQGGSTKTATSKAATPESFSEKPADVVGRENKLV-- 69

Query: 72  HPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
           HP+L D N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 70  HPEL-DLNYMSKRRVPNGPDPIHNRRAGNSGRPP 100

[Close]

BLAST of Csa5G604030 vs. NCBI nr
Match: gi|567892017|ref|XP_006438529.1| (hypothetical protein CICLE_v10033175mg [Citrus clementina])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 14  KVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINNHP 73
           K L GA+ VG  + LL++G+     G + S     +S   ++   A+   +      +HP
Sbjct: 8   KALFGALAVGWLICLLLIGNLESG-GNSTSTLTTTQSTANLKRAEALGREK----FIDHP 67

Query: 74  KLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 106
           +L D N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 68  EL-DLNYMSKRRVPNGPDPIHNRRAGNSGRPP 93

The following BLAST results are available for this feature:

BLAST of Csa5G604030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF7_CUCSA	9.3e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1	[more]
M5XZR3_PRUPE	1.8e-07	39.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013780mg PE=4 SV=1	[more]
V4VGV5_9ROSI	8.8e-07	40.22	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033175mg PE=4 SV=1	[more]
A0A067H4U1_CITSI	8.8e-07	40.22	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034371mg PE=4 SV=1	[more]
A0A061EDD3_THECC	1.5e-06	39.58	Clavata3/esr-related 26, putative isoform 1 OS=Theobroma cacao GN=TCM_010103 PE=...	[more]

BLAST of Csa5G604030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705215\|ref\|XP_011655655.1\|	1.3e-56	100.00	PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus]	[more]
gi\|1009153815\|ref\|XP_015894831.1\|	2.6e-07	41.35	PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Ziziphus jujuba]	[more]
gi\|596197970\|ref\|XP_007223616.1\|	2.6e-07	39.36	hypothetical protein PRUPE_ppa013780mg [Prunus persica]	[more]
gi\|645229493\|ref\|XP_008221492.1\|	3.3e-07	39.36	PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume]	[more]
gi\|567892017\|ref\|XP_006438529.1\|	1.3e-06	40.22	hypothetical protein CICLE_v10033175mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU125536	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G604030.1	Csa5G604030.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU125536	CU125536	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34277	FAMILY NOT NAMED	coord: 2..108 score: 6.3
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 2..108 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G604030	MELO3C012043	Melon (DHL92) v3.5.1	cumeB377
Csa5G604030	ClCG05G024840	Watermelon (Charleston Gray)	cuwcgB394
Csa5G604030	MELO3C012043.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G604030	Cla97C05G106950	Watermelon (97103) v2	cuwmbB383
Csa5G604030	Bhi07G001335	Wax gourd	cuwgoB512
Csa5G604030	CSPI05G23180	Wild cucumber (PI 183967)	cpicuB239
Csa5G604030	CmoCh04G003320	Cucurbita moschata (Rifu)	cmocuB718
Csa5G604030	CsGy5G022660	Cucumber (Gy14) v2	cgybcuB223
Csa5G604030	Carg07995	Silver-seed gourd	carcuB0408

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G604030	Cucurbita maxima (Rimu)	cmacuB724
Csa5G604030	Cucurbita maxima (Rimu)	cmacuB729
Csa5G604030	Cucurbita moschata (Rifu)	cmocuB715
Csa5G604030	Melon (DHL92) v3.5.1	cumeB386
Csa5G604030	Melon (DHL92) v3.5.1	cumeB392
Csa5G604030	Watermelon (Charleston Gray)	cuwcgB370
Csa5G604030	Watermelon (Charleston Gray)	cuwcgB401
Csa5G604030	Watermelon (97103) v1	cuwmB401
Csa5G604030	Watermelon (97103) v1	cuwmB442
Csa5G604030	Cucurbita pepo (Zucchini)	cpecuB416
Csa5G604030	Cucurbita pepo (Zucchini)	cpecuB419
Csa5G604030	Bottle gourd (USVL1VR-Ls)	culsiB349
Csa5G604030	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G604030	Bottle gourd (USVL1VR-Ls)	culsiB384
Csa5G604030	Cucumber (Gy14) v2	cgybcuB035
Csa5G604030	Melon (DHL92) v3.6.1	cumedB370
Csa5G604030	Silver-seed gourd	carcuB0860
Csa5G604030	Watermelon (97103) v2	cuwmbB342
Csa5G604030	Watermelon (97103) v2	cuwmbB391
Csa5G604030	Wax gourd	cuwgoB498
Csa5G604030	Cucumber (Chinese Long) v2	cucuB033
Csa5G604030	Cucumber (Chinese Long) v2	cucuB029
Csa5G604030	Cucumber (Gy14) v1	cgycuB108
Csa5G604030	Cucumber (Gy14) v1	cgycuB303
Csa5G604030	Cucumber (Gy14) v1	cgycuB410