Carg07995 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07995
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CLAVATA3/ESR (CLE)-related protein 25
Location	Cucurbita_argyrosperma_scaffold_050 : 86577 .. 87051 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGGGAAGGTAGTTGTTGCTCATTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCGGAGAACGGTCGATGGCAAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGGTGAATTTTTTCGAAGATCAACTTTAACATAGCAATGATATCGAGTTGTGTTCAAATTTCTTACTGGACTTTTGTGAGATCCCATGTCATTTTGAGAAGAGAATGAAACATTTTTTTTTGAAGGTGTGGAAAATTTTTCCTAACATATATATTGACTTTAAGCGAGTTAATATTTGTTGGGTTTGGTTTGCAGGCGAACGGGAGTAAAAGGACGGCCACCCGCCTGA

mRNA sequence

ATGAGAAGGGAAGGTAGTTGTTGCTCATTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCGGAGAACGGTCGATGGCAAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGGCGAACGGGAGTAAAAGGACGGCCACCCGCCTGA

Coding sequence (CDS)

ATGAGAAGGGAAGGTAGTTGTTGCTCATTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCGGAGAACGGTCGATGGCAAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGGCGAACGGGAGTAAAAGGACGGCCACCCGCCTGA

Protein sequence

MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMKQAKELNFMSKVKVPKGPDPIHNRRTGVKGRPPA

Homology

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BLAST of Carg07995 vs. NCBI nr
Match: XP_022151235.1 (uncharacterized protein LOC111019209 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 9.7e-20
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMK 60
           MR EG+ C FSY K LL A+ VG+F+W+L+VG+P+S ER   +TT+   A     GSH+K
Sbjct: 1   MRSEGNLCLFSYLKFLLQALVVGLFLWILMVGLPESRERPAVETTNGLLAT---VGSHVK 60

Query: 61  QAK----------ELNFMSKVKVPKGPDPIHNRRTGVKGRPPA 94
           Q K          +LNFMSKV+VPKGPDPIHNRR G+ G PP+
Sbjct: 61  QVKVLPNNNHQDLDLNFMSKVRVPKGPDPIHNRRVGINGGPPS 100

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BLAST of Carg07995 vs. NCBI nr
Match: XP_011655655.1 (PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical protein Csa_5G604030 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-18
Identity = 59/108 (54.63%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARS---EFEGS 60
           M+   SCC FSY KVLLGAV VG+FVWLL+VG   S      +T SW AA     + EG 
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61  H-MKQAKEL------------NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
           H MK+A++             NFMSKV+VPKGPDPIHNRR GVKG PP
Sbjct: 61  HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of Carg07995 vs. NCBI nr
Match: POF22578.1 (isoform 2 of clavata3/esr (cle)-related protein 26 [Quercus suber])

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 13 FKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHM---KQAKELNFMS 72
          FK++LGA+A+  F++LL+VG  +SG   M  T S  +  + F+G          +LN+MS
Sbjct: 14 FKIMLGALALVGFIFLLLVGNQESGRAKMETTLSTQSG-ANFKGKEKLVDHPELDLNYMS 73

Query: 73 KVKVPKGPDPIHNRRTGVKGRPP 93
          K +VP GPDPIHNRR G  GRPP
Sbjct: 74 KRRVPNGPDPIHNRRAGNSGRPP 95

[Close]

BLAST of Carg07995 vs. NCBI nr
Match: XP_023884840.1 (CLAVATA3/ESR (CLE)-related protein 25-like [Quercus suber])

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 13 FKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHM---KQAKELNFMS 72
          FK++LGA+A+  F++LL+VG  +SG   M  T S  +  + F+G          +LN+MS
Sbjct: 17 FKIMLGALALVGFIFLLLVGNQESGRAKMETTLSTQSG-ANFKGKEKLVDHPELDLNYMS 76

Query: 73 KVKVPKGPDPIHNRRTGVKGRPP 93
          K +VP GPDPIHNRR G  GRPP
Sbjct: 77 KRRVPNGPDPIHNRRAGNSGRPP 98

[Close]

BLAST of Carg07995 vs. NCBI nr
Match: PSS28686.1 (CLE25p like [Actinidia chinensis var. chinensis])

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMK 60
           MRRE   CS    K L GAVA   F+WL++VG+ ++G  +   TT  P      +   M+
Sbjct: 1   MRREMGGCSGRVLKALFGAVAFVGFIWLVLVGILETG-GTKTTTTLNPRPAGGLKHVEMR 60

Query: 61  QAKEL---------NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
             ++L         N+MSK +VP GPDP+HNRRTG   RPP
Sbjct: 61  GREKLAVHLDLSDHNYMSKRRVPNGPDPVHNRRTGNSQRPP 100

[Close]

BLAST of Carg07995 vs. TAIR10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25)

HSP 1 Score: 40.4 bits (93), Expect = 7.0e-04
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 14 KVLLGAVA-VGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMKQAKELNFMSKVK 73
          + L+G +A +G+ V+LL VG+  +   S+  + +    R  F G  +     L  +SK K
Sbjct: 7  RALVGVIASLGLIVFLL-VGILANSAPSVPSSENVKTLR--FSGKDV----NLFHVSKRK 66

Query: 74 VPKGPDPIHNRRTGVKGRPP 93
          VP GPDPIHNR+     RPP
Sbjct: 67 VPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Carg07995 vs. TrEMBL
Match: tr|A0A0A0KQF7|A0A0A0KQF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 59/108 (54.63%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARS---EFEGS 60
           M+   SCC FSY KVLLGAV VG+FVWLL+VG   S      +T SW AA     + EG 
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61  H-MKQAKEL------------NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
           H MK+A++             NFMSKV+VPKGPDPIHNRR GVKG PP
Sbjct: 61  HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of Carg07995 vs. TrEMBL
Match: tr|A0A2P2NNP3|A0A2P2NNP3_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 44/93 (47.31%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 5   GSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMK--QA 64
           GS     +FKVL+GA+A+  FVW+L+VG  +SG      TTS    + E      K    
Sbjct: 11  GSSSGSLFFKVLIGAIAMVGFVWVLLVGTLESGATRQTTTTSIMPTKDELVVGKEKLVYV 70

Query: 65  KELNF---MSKVKVPKGPDPIHNRRTGVKGRPP 93
            EL+F   MSK KVP GPDPIHNRR G   RPP
Sbjct: 71  PELDFNYMMSKRKVPNGPDPIHNRRAGNSKRPP 103

[Close]

BLAST of Carg07995 vs. TrEMBL
Match: tr|A0A2P4MYH7|A0A2P4MYH7_QUESU (Isoform 2 of clavata3/esr (Cle)-related protein 26 OS=Quercus suber OX=58331 GN=CFP56_40576 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 13 FKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHM---KQAKELNFMS 72
          FK++LGA+A+  F++LL+VG  +SG   M  T S  +  + F+G          +LN+MS
Sbjct: 14 FKIMLGALALVGFIFLLLVGNQESGRAKMETTLSTQSG-ANFKGKEKLVDHPELDLNYMS 73

Query: 73 KVKVPKGPDPIHNRRTGVKGRPP 93
          K +VP GPDPIHNRR G  GRPP
Sbjct: 74 KRRVPNGPDPIHNRRAGNSGRPP 95

[Close]

BLAST of Carg07995 vs. TrEMBL
Match: tr|A0A2R6RF86|A0A2R6RF86_ACTCH (CLE25p like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc06284 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.7e-09
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMK 60
           MRRE   CS    K L GAVA   F+WL++VG+ ++G  +   TT  P      +   M+
Sbjct: 1   MRREMGGCSGRVLKALFGAVAFVGFIWLVLVGILETG-GTKTTTTLNPRPAGGLKHVEMR 60

Query: 61  QAKEL---------NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
             ++L         N+MSK +VP GPDP+HNRRTG   RPP
Sbjct: 61  GREKLAVHLDLSDHNYMSKRRVPNGPDPVHNRRTGNSQRPP 100

[Close]

BLAST of Carg07995 vs. TrEMBL
Match: tr|A0A2P6R498|A0A2P6R498_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0445011 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 46/102 (45.10%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 9   SFSYFKVLLGAVAVGMFVWLLIVGMPD--------SGERSMAKT--TSWPAARSEFEGSH 68
           S S+ KVLLG VAV  F+ +L+V   D         G  +  KT  T+  A   +F G+ 
Sbjct: 11  SSSFVKVLLGTVAVVGFILVLLVATLDLTTTDQGQGGGIASTKTAATTSSATSDQFAGNS 70

Query: 69  MKQAK--------ELNFMSKVKVPKGPDPIHNRRTGVKGRPP 93
           MK A         +LN+MSK +VP GPDPIHNRRTG  GRPP
Sbjct: 71  MKHADQELVHPELDLNYMSKRRVPNGPDPIHNRRTGNSGRPP 112

The following BLAST results are available for this feature:

BLAST of Carg07995 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151235.1	9.7e-20	53.40	uncharacterized protein LOC111019209 [Momordica charantia]	[more]
XP_011655655.1	4.1e-18	54.63	PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hy...	[more]
POF22578.1	4.5e-09	46.99	isoform 2 of clavata3/esr (cle)-related protein 26 [Quercus suber]	[more]
XP_023884840.1	4.5e-09	46.99	CLAVATA3/ESR (CLE)-related protein 25-like [Quercus suber]	[more]
PSS28686.1	1.0e-08	41.58	CLE25p like [Actinidia chinensis var. chinensis]	[more]

BLAST of Carg07995 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28455.1	7.0e-04	37.50	CLAVATA3/ESR-RELATED 25	[more]

BLAST of Carg07995 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07995 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQF7\|A0A0A0KQF7_CUCSA	2.7e-18	54.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1	[more]
tr\|A0A2P2NNP3\|A0A2P2NNP3_RHIMU	1.8e-09	47.31	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A2P4MYH7\|A0A2P4MYH7_QUESU	3.0e-09	46.99	Isoform 2 of clavata3/esr (Cle)-related protein 26 OS=Quercus suber OX=58331 GN=...	[more]
tr\|A0A2R6RF86\|A0A2R6RF86_ACTCH	6.7e-09	41.58	CLE25p like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc06284 P...	[more]
tr\|A0A2P6R498\|A0A2P6R498_ROSCH	1.1e-08	45.10	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0445011 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045168	cell-cell signaling involved in cell fate commitment

Vocabulary: **INTERPRO**
Term	Definition
IPR039316	CLE25/26

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07995-RA	Carg07995-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..93
None	No IPR available	PANTHER	PTHR34277:SF2	SUBFAMILY NOT NAMED	coord: 10..92
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	FAMILY NOT NAMED	coord: 10..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07995	Csa5G604030	Cucumber (Chinese Long) v2	carcuB0408
Carg07995	MELO3C012043	Melon (DHL92) v3.5.1	carmeB0376
Carg07995	ClCG05G024840	Watermelon (Charleston Gray)	carwcgB0371
Carg07995	CSPI05G23180	Wild cucumber (PI 183967)	carcpiB0412
Carg07995	CmaCh04G003160	Cucurbita maxima (Rimu)	carcmaB0529
Carg07995	CmoCh04G003320	Cucurbita moschata (Rifu)	carcmoB0514
Carg07995	Lsi04G004970	Bottle gourd (USVL1VR-Ls)	carlsiB344
Carg07995	Cp4.1LG01g03960	Cucurbita pepo (Zucchini)	carcpeB0527
Carg07995	CsGy5G022660	Cucumber (Gy14) v2	carcgybB0387
Carg07995	MELO3C012043.2	Melon (DHL92) v3.6.1	carmedB0381
Carg07995	CsaV3_5G032070	Cucumber (Chinese Long) v3	carcucB0411
Carg07995	Cla97C05G106950	Watermelon (97103) v2	carwmbB0397
Carg07995	Bhi07G001335	Wax gourd	carwgoB0465

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07995	Silver-seed gourd	carcarB405
Carg07995	Cucumber (Gy14) v1	carcgyB0438
Carg07995	Cucurbita maxima (Rimu)	carcmaB0530
Carg07995	Cucurbita moschata (Rifu)	carcmoB0515
Carg07995	Cucurbita pepo (Zucchini)	carcpeB0528
Carg07995	Watermelon (97103) v1	carwmB0372