Cp4.1LG01g03960 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 1565998 .. 1567149 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTAGAGGTAAATTAATATGATATGTTAGAATATAATGGTGTGTGTGTGTGTCAATTATAAACAAACAGGCAAGGCAGGGTTTGAGAAAAGTGCAACAGAATCCACCAACCCTATAAAGAAAAAAAAGACAACTCCCTAATTAAACATGCACTCCCCTTTTCTAAACAAACTCCTCTCCTTCTTCTTCCTCTTCCTCTCTTCTTCTTCTCATTGCTTGACGTCCTTGCCTCTTCGAGTCGTAAAGTTAACTAATCTCTTTCGACGTACATAGACAGAAGTGTATATATATATATTTATGAGAAGTGAAGGTAGTTGTTGCTCGTTTTCTTACTTCAAGGTCTTGCTTGGAGCTGCGGCAGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCAGAGAACGGTCGGTAGCAAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGGTGATTTTTTTCGAAGATCAACTTTAACATGACAATGATATCGGGTTGTGTTCAAATTTCTTATTAGACTTTTGTAAGATCCCACGTCATTTTGAGAAGAGAATGAAACATTTTTTATGAGGGTGTGAAATTTTTTTCCTACCATATATATTGATTTTAAGCGAGTTAATATTTGTTGGGTTTGGTTTGCAGGCGAACGGGAGTAAAAGGACGGCCACCCGCCTGACCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTCCTCCAGTTTGAGAGCAACTCATGTCTCTTGGTTCTTCTCAACGTTACCCTTTAATGTTAATTAACTTCAAACAACATGCCTCTTATTTGTATTCTAATTTCAATAATCCAAAATAAAAAACATCTGGATTGTACATATCTCCCTCTCTCTATGTGTATATATATGGGCTTGGGCTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTCATAGATGGGCAATTTTGGTATAGCTTTTAGAACAGAGAAAAAGGAAAGGAAATAGTTGTTCAAATGAATCTAATTCTTTGTATAATTTGAATGTGTAGAATTGGTGGATAA

mRNA sequence

ATATTAGAGGTAAATTAATATGATATGTTAGAATATAATGGTGTGTGTGTGTGTCAATTATAAACAAACAGGCAAGGCAGGGTTTGAGAAAAGTGCAACAGAATCCACCAACCCTATAAAGAAAAAAAAGACAACTCCCTAATTAAACATGCACTCCCCTTTTCTAAACAAACTCCTCTCCTTCTTCTTCCTCTTCCTCTCTTCTTCTTCTCATTGCTTGACGTCCTTGCCTCTTCGAGTCGTAAAGTTAACTAATCTCTTTCGACGTACATAGACAGAAGTGTATATATATATATTTATGAGAAGTGAAGGTAGTTGTTGCTCGTTTTCTTACTTCAAGGTCTTGCTTGGAGCTGCGGCAGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCAGAGAACGGTCGGTAGCAAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGAATTGGTGGATAA

Coding sequence (CDS)

ATGAGAAGTGAAGGTAGTTGTTGCTCGTTTTCTTACTTCAAGGTCTTGCTTGGAGCTGCGGCAGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCGACAGCAGAGAACGGTCGGTAGCAAAAACAACAAGCTGGCCGGCAGCTAGGTCTGAGTTTGAGGGAAGCCATATGAAGCAAGCCAAGGAGCTTAACTTCATGAGCAAAGTTAAAGTCCCTAAAGGACCCGACCCAATTCATAACAGAATTGGTGGATAA

Protein sequence

MRSEGSCCSFSYFKVLLGAAAVGMFVWLLIVGMPDSRERSVAKTTSWPAARSEFEGSHMKQAKELNFMSKVKVPKGPDPIHNRIGG
Homology
[Close]
BLAST of Cp4.1LG01g03960 vs. TrEMBL
Match: A0A0A0KQF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-15
Identity = 52/99 (52.53%), Postives = 61/99 (61.62%), Query Frame = 1 

Query: 1  MRSEGSCCSFSYFKVLLGAAAVGMFVWLLIVGMPDSRERSVAKTTSWPAARS---EFEGS 60
          M+S  SCC FSY KVLLGA  VG+FVWLL+VG   S      +T SW AA     + EG 
Sbjct: 1  MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61 H-MKQAKEL------------NFMSKVKVPKGPDPIHNR 84
          H MK+A++             NFMSKV+VPKGPDPIHNR
Sbjct: 61 HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNR 96

[Close]
BLAST of Cp4.1LG01g03960 vs. NCBI nr
Match: gi|778705215|ref|XP_011655655.1| (PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 7.6e-15
Identity = 52/99 (52.53%), Postives = 61/99 (61.62%), Query Frame = 1 

Query: 1  MRSEGSCCSFSYFKVLLGAAAVGMFVWLLIVGMPDSRERSVAKTTSWPAARS---EFEGS 60
          M+S  SCC FSY KVLLGA  VG+FVWLL+VG   S      +T SW AA     + EG 
Sbjct: 1  MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61 H-MKQAKEL------------NFMSKVKVPKGPDPIHNR 84
          H MK+A++             NFMSKV+VPKGPDPIHNR
Sbjct: 61 HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNR 96

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQF7_CUCSA5.3e-1552.53Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705215|ref|XP_011655655.1|7.6e-1552.53PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03960.1Cp4.1LG01g03960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03960CmaCh04G003160Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03960CmoCh04G003320Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03960ClCG05G024840Watermelon (Charleston Gray)cpewcgB395
Cp4.1LG01g03960MELO3C012043.2Melon (DHL92) v3.6.1cpemedB439
Cp4.1LG01g03960CsaV3_5G032070Cucumber (Chinese Long) v3cpecucB0521
Cp4.1LG01g03960Bhi07G001335Wax gourdcpewgoB0571
Cp4.1LG01g03960CsGy5G022660Cucumber (Gy14) v2cgybcpeB631
Cp4.1LG01g03960Carg07995Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03960Cucurbita pepo (Zucchini)cpecpeB375
Cp4.1LG01g03960Cucumber (Gy14) v1cgycpeB0755
Cp4.1LG01g03960Cucurbita maxima (Rimu)cmacpeB724
Cp4.1LG01g03960Cucurbita moschata (Rifu)cmocpeB676
Cp4.1LG01g03960Wild cucumber (PI 183967)cpecpiB419
Cp4.1LG01g03960Cucumber (Chinese Long) v2cpecuB419
Cp4.1LG01g03960Bottle gourd (USVL1VR-Ls)cpelsiB363
Cp4.1LG01g03960Watermelon (97103) v1cpewmB434
Cp4.1LG01g03960Melon (DHL92) v3.5.1cpemeB380
Cp4.1LG01g03960Silver-seed gourdcarcpeB1178