CmaCh04G003160 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G003160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	CLAVATA3/ESR (CLE)-related 25-like protein
Location	Cma_Chr04 : 1551600 .. 1552500 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCTAATTAAACATGCACACCCCTTTTCTAAACAAACTCCTCTCCTTCTTCCTCTTCCTCTCTTCTTCTTCTCATTGTCTGACCCTACTTAAGATAACATACTTCGATCCATCGTCGTTGTCGTCTTTACCTCTCGGGTTGTAAAAACTAATCTCTCTCGACGTGCACCGATAGAAGTATACATATATTTATGAGAAGTGAAGGTAGTTGTTGCTCGTTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCAACAGCGGCGAACAGTTGGTAGCAAAAACAACAAGCTCGCAGGCAGCTAGGTCTGAGTTTGTGGGAAGCCATATGAAGCCAGCTAAGGAGCTTAACTTCATGAGCAAAGTTAAGGTCCCTAAAGGACCGGACCCAATTCATAACAGGTGATTTATTTTTCGAAGATCAACTTTAGCAATGACAATGATATTGGGTTGTGTTCAAAGAGATCGAACGAAACATTATTTATAATGACATAAAAACTTTATACTAGTCTTTAAATTCATGAACATAAAAGAACGATAGAATTATGAATACAAATTAAATTTACGGAACTATTCACGAAAGTTGAATATATATTGATTTTAAGCGAGTTAATATTTGTTGGGTTTGGTTTGCAGGCGAACTGGAGTAAAAGGACGGCCTCCCGCCTTAACTTAGGCTTAGGCTTCCTCCAGTTTGAGAGGAACTCATGCCTCTTGGTTCTTCTCAACGTTACCCTTTACTGTTAATCAACTTCAAACAACATGCCTCTTATTTGTATTCTAATTTCAATAATCCAAAATAAAAAACGTCTGGATTGTACATATCTCCCTCTCTCTATGTGTATATATATGGGCTTGGGCTA

mRNA sequence

CTCCCTAATTAAACATGCACACCCCTTTTCTAAACAAACTCCTCTCCTTCTTCCTCTTCCTCTCTTCTTCTTCTCATTGTCTGACCCTACTTAAGATAACATACTTCGATCCATCGTCGTTGTCGTCTTTACCTCTCGGGTTGTAAAAACTAATCTCTCTCGACGTGCACCGATAGAAGTATACATATATTTATGAGAAGTGAAGGTAGTTGTTGCTCGTTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCAACAGCGGCGAACAGTTGGTAGCAAAAACAACAAGCTCGCAGGCAGCTAGGTCTGAGTTTGTGGGAAGCCATATGAAGCCAGCTAAGGAGCTTAACTTCATGAGCAAAGTTAAGGTCCCTAAAGGACCGGACCCAATTCATAACAGGCGAACTGGAGTAAAAGGACGGCCTCCCGCCTTAACTTAGGCTTAGGCTTCCTCCAGTTTGAGAGGAACTCATGCCTCTTGGTTCTTCTCAACGTTACCCTTTACTGTTAATCAACTTCAAACAACATGCCTCTTATTTGTATTCTAATTTCAATAATCCAAAATAAAAAACGTCTGGATTGTACATATCTCCCTCTCTCTATGTGTATATATATGGGCTTGGGCTA

Coding sequence (CDS)

ATGAGAAGTGAAGGTAGTTGTTGCTCGTTTTCTTACTTCAAGGTCTTGCTTGGAGCTGTGGCTGTTGGGATGTTTGTATGGCTTTTAATCGTTGGCATGCCCAACAGCGGCGAACAGTTGGTAGCAAAAACAACAAGCTCGCAGGCAGCTAGGTCTGAGTTTGTGGGAAGCCATATGAAGCCAGCTAAGGAGCTTAACTTCATGAGCAAAGTTAAGGTCCCTAAAGGACCGGACCCAATTCATAACAGGCGAACTGGAGTAAAAGGACGGCCTCCCGCCTTAACTTAG

Protein sequence

MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAARSEFVGSHMKPAKELNFMSKVKVPKGPDPIHNRRTGVKGRPPALT

Homology

[Close]

BLAST of CmaCh04G003160 vs. TrEMBL
Match: A0A0A0KQF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAARS---EFVGS 60
           M+S  SCC FSY KVLLGAV VG+FVWLL+VG   S      +T S QAA     +  G 
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61  H-MKPAKEL------------NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
           H MK A++             NFMSKV+VPKGPDPIHNRR GVKG PP
Sbjct: 61  HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of CmaCh04G003160 vs. TrEMBL
Match: V4VGV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033175mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1


Query: 13 FKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAA----RSEFVGSHM---KPAKEL 72
          FK L GA+AVG  + LL++G   SG    +  T++Q+     R+E +G       P  +L
Sbjct: 7  FKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDL 66

Query: 73 NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
          N+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 67 NYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of CmaCh04G003160 vs. TrEMBL
Match: A0A067H4U1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034371mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1


Query: 13 FKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAA----RSEFVGSHM---KPAKEL 72
          FK L GA+AVG  + LL++G   SG    +  T++Q+     R+E +G       P  +L
Sbjct: 7  FKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDL 66

Query: 73 NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
          N+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 67 NYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of CmaCh04G003160 vs. TrEMBL
Match: B9HU81_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s04900g PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPNSG---EQLVAKTTSSQAARSEFVGS 60
           M   GS CS S FKVLLG +A  +FV LL+VG   SG   +   ++  S QA +++    
Sbjct: 1   MGCSGSSCSLS-FKVLLGGIATVVFVMLLLVGALESGATSKMTTSRLNSVQATQNDLKDD 60

Query: 61  HMKPA-----------KELNFM-SKVKVPKGPDPIHNRRTGVKGRPP 93
           H K              +LN+M SK +VP GPDPIHNRR G   RPP
Sbjct: 61  HEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPP 106

[Close]

BLAST of CmaCh04G003160 vs. TrEMBL
Match: M5XZR3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013780mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 43/102 (42.16%), Postives = 53/102 (51.96%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAARSEF------ 60
           M S G    F   K+  G +AV  F+ +L+VG   +   L    TS+ AA   F      
Sbjct: 1   MASSGGVSCF--LKLFFGTLAVMGFICVLLVGTLETQGGLTKTATSTAAAPESFSEKPAD 60

Query: 61  -VGSHMK---PAKELNFMSKVKVPKGPDPIHNRRTGVKGRPP 93
            VG   K   P  +LN+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 61  VVGRENKLVHPELDLNYMSKRRVPNGPDPIHNRRAGSSGRPP 100

[Close]

BLAST of CmaCh04G003160 vs. NCBI nr
Match: gi|778705215|ref|XP_011655655.1| (PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAARS---EFVGS 60
           M+S  SCC FSY KVLLGAV VG+FVWLL+VG   S      +T S QAA     +  G 
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60

Query: 61  H-MKPAKEL------------NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
           H MK A++             NFMSKV+VPKGPDPIHNRR GVKG PP
Sbjct: 61  HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of CmaCh04G003160 vs. NCBI nr
Match: gi|567892017|ref|XP_006438529.1| (hypothetical protein CICLE_v10033175mg [Citrus clementina])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1


Query: 13 FKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAA----RSEFVGSHM---KPAKEL 72
          FK L GA+AVG  + LL++G   SG    +  T++Q+     R+E +G       P  +L
Sbjct: 7  FKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDL 66

Query: 73 NFMSKVKVPKGPDPIHNRRTGVKGRPP 93
          N+MSK +VP GPDPIHNRR G  GRPP
Sbjct: 67 NYMSKRRVPNGPDPIHNRRAGNSGRPP 93

[Close]

BLAST of CmaCh04G003160 vs. NCBI nr
Match: gi|224107855|ref|XP_002314627.1| (hypothetical protein POPTR_0010s04900g [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPNSG---EQLVAKTTSSQAARSEFVGS 60
           M   GS CS S FKVLLG +A  +FV LL+VG   SG   +   ++  S QA +++    
Sbjct: 1   MGCSGSSCSLS-FKVLLGGIATVVFVMLLLVGALESGATSKMTTSRLNSVQATQNDLKDD 60

Query: 61  HMKPA-----------KELNFM-SKVKVPKGPDPIHNRRTGVKGRPP 93
           H K              +LN+M SK +VP GPDPIHNRR G   RPP
Sbjct: 61  HEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPP 106

[Close]

BLAST of CmaCh04G003160 vs. NCBI nr
Match: gi|1009153815|ref|XP_015894831.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Ziziphus jujuba])

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 12 YFKVLLGAVAVGMFVWLLIVGMPNSGEQLVAKTTSSQAARSEFVGSH--MKPAKELNFMS 71
          + K+L  A+AV  F+W+L+VG  ++        ++     S+ VG    ++P  ++N+MS
Sbjct: 17 FSKLLFRALAVVGFIWILLVGTGDTKSASFVAESAGNIKDSDVVGREKLVRPQLDINYMS 76

Query: 72 KVKVPKGPDPIHNRRTGVKGRPP 93
          K +VP GPDPIHNRR G  GRPP
Sbjct: 77 KRRVPNGPDPIHNRRAGNSGRPP 99

[Close]

BLAST of CmaCh04G003160 vs. NCBI nr
Match: gi|743927806|ref|XP_011008087.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Populus euphratica])

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 1   MRSEGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPNSG---EQLVAKTTSSQAARSEFVGS 60
           M   GS CS S FK+LLG VA  +FV LL+VG    G   +   ++  S QA +++    
Sbjct: 1   MGGSGSSCSLS-FKLLLGGVATVVFVMLLLVGALEGGATSKMTTSRLNSVQATKNDLKDD 60

Query: 61  HMKPA-----------KELNFM-SKVKVPKGPDPIHNRRTGVKGRPP 93
           H K              +LN+M SK +VP GPDPIHNRR G   RPP
Sbjct: 61  HEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPP 106

The following BLAST results are available for this feature:

BLAST of CmaCh04G003160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G003160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF7_CUCSA	1.1e-16	54.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1	[more]
V4VGV5_9ROSI	1.3e-09	45.98	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033175mg PE=4 SV=1	[more]
A0A067H4U1_CITSI	1.3e-09	45.98	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034371mg PE=4 SV=1	[more]
B9HU81_POPTR	1.4e-08	42.99	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s04900g PE=4 SV=1	[more]
M5XZR3_PRUPE	1.6e-07	42.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013780mg PE=4 SV=1	[more]

BLAST of CmaCh04G003160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G003160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705215\|ref\|XP_011655655.1\|	1.5e-16	54.63	PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus]	[more]
gi\|567892017\|ref\|XP_006438529.1\|	1.8e-09	45.98	hypothetical protein CICLE_v10033175mg [Citrus clementina]	[more]
gi\|224107855\|ref\|XP_002314627.1\|	2.0e-08	42.99	hypothetical protein POPTR_0010s04900g [Populus trichocarpa]	[more]
gi\|1009153815\|ref\|XP_015894831.1\|	3.4e-08	40.96	PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Ziziphus jujuba]	[more]
gi\|743927806\|ref\|XP_011008087.1\|	5.9e-08	42.06	PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003160.1	CmaCh04G003160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34277	FAMILY NOT NAMED	coord: 1..92 score: 4.4
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 1..92 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G003160	MELO3C012043	Melon (DHL92) v3.5.1	cmameB657
CmaCh04G003160	ClCG05G024840	Watermelon (Charleston Gray)	cmawcgB660
CmaCh04G003160	CmoCh04G003320	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G003160	Lsi04G004970	Bottle gourd (USVL1VR-Ls)	cmalsiB681
CmaCh04G003160	Cp4.1LG01g03960	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G003160	MELO3C012043.2	Melon (DHL92) v3.6.1	cmamedB744
CmaCh04G003160	CsaV3_5G032070	Cucumber (Chinese Long) v3	cmacucB0866
CmaCh04G003160	Cla97C05G106950	Watermelon (97103) v2	cmawmbB764
CmaCh04G003160	Bhi07G001335	Wax gourd	cmawgoB0907
CmaCh04G003160	CsGy5G022660	Cucumber (Gy14) v2	cgybcmaB653
CmaCh04G003160	Carg07995	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G003160	Cucurbita pepo (Zucchini)	cmacpeB726
CmaCh04G003160	Silver-seed gourd	carcmaB1172
CmaCh04G003160	Cucurbita maxima (Rimu)	cmacmaB532
CmaCh04G003160	Cucumber (Gy14) v1	cgycmaB0805
CmaCh04G003160	Cucurbita moschata (Rifu)	cmacmoB733
CmaCh04G003160	Wild cucumber (PI 183967)	cmacpiB736
CmaCh04G003160	Cucumber (Chinese Long) v2	cmacuB729
CmaCh04G003160	Watermelon (97103) v1	cmawmB704