Lsi04G004970 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G004970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 4599581 .. 4601203 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGTGGAGATCATAGTTGTTGCTACTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGTTGTGGGGTTGTTTGTATGGCTTTTAATCATTGGGTCGCCGACACCGGGGAGAACAACAAGCTGGCCGGAAGCTGAGTCTGAGGTTGAGGGAAGCCATGTCATGAAGCCAGCTAAGGAATTGGCCAACAACAACCATCCAAAGTTGGATCCTAACTTTATGAGCAAAATTAGAGTTCCTAAAGGACCAGACCCCATTCATAACAGGTATATAAAATATATAAATAAGCTTTACAGATTTAGGGAAATTTTTAAAAATAAAAAAATTAGGGAAACTATTTACACAAAATAACAAAATTTTTATATAATTGCGATAGACGCTCATAGAAGTCTATCAAAGTCTATCAGTGATAGAAATGATAGAAGTCTATTACTAATAGATGCTAATAATGATAGAAGTCTATTACTAATAGATGCTAATAGAAGTCTATCAATATCTATTAGTGTTTTTTATTTTTGTTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTGTGAAATTTTCCCTAAGATTTATTAAATTTATTATAATCTATACTAAATTTAGCATGAATATTTTTACAAAAAAAAAATATATATATCAATATCAATAATTTAAATTCTTGTAATGTGATTTTTATATCTCACTTAGTATTAATAAGGTTAAAATGTTATTTTGTATCTATACTTTGAAGTTTGTTCAAGTTTAATCATGTACTTTCAATAACTCTTAAATTTAGTCTCGATTGTTAGTTCATTGTCGATTTTTTTATAAAAAAATTTGTTAATTATTTGATTTTTTACTATAAATTTTGAAGACATATTCACATATTGTATTATTATTATTATTATTATTATTATTATTATTTAACCAATTTTAGTAAAAATGAATTTTGAGAGACTAAATTAAAGATTTATTAAAAATACAAGGACTAAAGTTGAACAAACTTTAGAGTATAGGAACAAAAGTAATATTTTAACCTATTAATAATTACGTGTTAGACTTTGGGTTAAATTTTGAAGTTTACAAATAAATGAAAATGTTAGAATTTTTTAAATATATATTTTAATGGTCTTAGTGTGTATGACATATATGCTCTAGAAGCTATACTTTAAACAAATAAAAAAACATTTTTTTCAAAATTATTTAACAATATATAGCTCATGGGCTTTAATTAAATTCATGCATGCAAGTATGGTTGAAAATTTTGTATTGAAGGTAGAGATAAAAATTAAAATTTATATTGAATTTATGTGTTATAATAAAATAAATATTTTATTTTGGGAGTGAGTTTTTGTTGAATATGTATGTACTTGGATTGGCAGGAGAATTGGGGTTAAAGGAGGGCCTCCCAGAGGAGCTTAGGCTTTGTAGACATAAAGGCATAGATTCCTTCATCCAGTTTCATAGAGCACTTTAAATATTAAGGTTCATTATGAACATTTCTTTTTTCTTTTTTTCTTTTTTTATTTGGGTAATTTCAAATAAGGGGAAATGTATAAAAATTCTGAATAAATCTGGATTGTATAGAATTGATGCACACTGAACTTTGTAGCTTTTGTAGAACACTAACTCTTTCC

mRNA sequence

ATGAGAAATCATAGTTGTTGCTACTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGTTGTGGGGTTGTTTGTATGGCTTTTAATCATTGGGTCGCCGACACCGGGGAGAACAACAAGCTGGCCGGAAGCTGAGTCTGAGGTTGAGGGAAGCCATGTCATGAAGCCAGCTAAGGAATTGGCCAACAACAACCATCCAAAGAGAATTGGGGTTAAAGGAGGGCCTCCCAGAGGAGCTTAGGCTTTGTAGACATAAAGGCATAGATTCCTTCATCCAGTTTCATAGAGCACTTTAAATATTAAGGTTCATTATGAACATTTCTTTTTTCTTTTTTTCTTTTTTTATTTGGGTAATTTCAAATAAGGGGAAATGTATAAAAATTCTGAATAAATCTGGATTGTATAGAATTGATGCACACTGAACTTTGTAGCTTTTGTAGAACACTAACTCTTTCC

Coding sequence (CDS)

ATGAGAAATCATAGTTGTTGCTACTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGTTGTGGGGTTGTTTGTATGGCTTTTAATCATTGGGTCGCCGACACCGGGGAGAACAACAAGCTGGCCGGAAGCTGAGTCTGAGGTTGAGGGAAGCCATGTCATGAAGCCAGCTAAGGAATTGGCCAACAACAACCATCCAAAGAGAATTGGGGTTAAAGGAGGGCCTCCCAGAGGAGCTTAG

Protein sequence

MRNHSCCYFSYLKVLLGAVVVGLFVWLLIIGSPTPGRTTSWPEAESEVEGSHVMKPAKELANNNHPKRIGVKGGPPRGA
Homology
[Close]
BLAST of Lsi04G004970 vs. TrEMBL
Match: A0A0A0KQF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 60/103 (58.25%), Postives = 66/103 (64.08%), Query Frame = 1 

Query: 5   SCCYFSYLKVLLGAVVVGLFVWLLIIGS--PTPGRTTSW---PEAESEVEGSHVMKPAK- 64
           SCCYFSYLKVLLGAVVVGLFVWLL++GS  P PGRT SW    E+  +VEG H MK A+ 
Sbjct: 6   SCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAED 65

Query: 65  ELANNNHPK----------------------RIGVKGGPPRGA 80
           +LA NNHPK                      RIGVKGGPPRGA
Sbjct: 66  QLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]
BLAST of Lsi04G004970 vs. NCBI nr
Match: gi|778705215|ref|XP_011655655.1| (PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 60/103 (58.25%), Postives = 66/103 (64.08%), Query Frame = 1 

Query: 5   SCCYFSYLKVLLGAVVVGLFVWLLIIGS--PTPGRTTSW---PEAESEVEGSHVMKPAK- 64
           SCCYFSYLKVLLGAVVVGLFVWLL++GS  P PGRT SW    E+  +VEG H MK A+ 
Sbjct: 6   SCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAED 65

Query: 65  ELANNNHPK----------------------RIGVKGGPPRGA 80
           +LA NNHPK                      RIGVKGGPPRGA
Sbjct: 66  QLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

The following BLAST results are available for this feature:
BLAST of Lsi04G004970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G004970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQF7_CUCSA1.2e-1858.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604030 PE=4 SV=1[more]
BLAST of Lsi04G004970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G004970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705215|ref|XP_011655655.1|1.8e-1858.25PREDICTED: uncharacterized protein LOC105435565 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004970.1Lsi04G004970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G004970CmaCh04G003160Cucurbita maxima (Rimu)cmalsiB681
Lsi04G004970CmoCh04G003320Cucurbita moschata (Rifu)cmolsiB674
Lsi04G004970MELO3C012043Melon (DHL92) v3.5.1lsimeB281
Lsi04G004970ClCG05G024840Watermelon (Charleston Gray)lsiwcgB283
Lsi04G004970MELO3C012043.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G004970Cla97C05G106950Watermelon (97103) v2lsiwmbB284
Lsi04G004970Bhi07G001335Wax gourdlsiwgoB380
Lsi04G004970CsGy5G022660Cucumber (Gy14) v2cgyblsiB337
Lsi04G004970Carg07995Silver-seed gourdcarlsiB344
Lsi04G004970CsaV3_5G032070Cucumber (Chinese Long) v3cuclsiB393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G004970Watermelon (97103) v2lsiwmbB261
Lsi04G004970Wax gourdlsiwgoB377
Lsi04G004970Bottle gourd (USVL1VR-Ls)lsilsiB097
Lsi04G004970Bottle gourd (USVL1VR-Ls)lsilsiB139
Lsi04G004970Cucumber (Gy14) v1cgylsiB119
Lsi04G004970Cucumber (Gy14) v1cgylsiB465
Lsi04G004970Cucurbita maxima (Rimu)cmalsiB381
Lsi04G004970Cucurbita maxima (Rimu)cmalsiB678
Lsi04G004970Cucurbita moschata (Rifu)cmolsiB671
Lsi04G004970Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G004970Cucurbita pepo (Zucchini)cpelsiB363
Lsi04G004970Wild cucumber (PI 183967)cpilsiB050
Lsi04G004970Wild cucumber (PI 183967)cpilsiB372
Lsi04G004970Cucumber (Chinese Long) v2culsiB051
Lsi04G004970Cucumber (Chinese Long) v2culsiB368
Lsi04G004970Melon (DHL92) v3.5.1lsimeB289
Lsi04G004970Watermelon (Charleston Gray)lsiwcgB274
Lsi04G004970Watermelon (Charleston Gray)lsiwcgB304
Lsi04G004970Watermelon (97103) v1lsiwmB312
Lsi04G004970Watermelon (97103) v1lsiwmB323
Lsi04G004970Cucumber (Gy14) v2cgyblsiB052
Lsi04G004970Melon (DHL92) v3.6.1lsimedB303
Lsi04G004970Melon (DHL92) v3.6.1lsimedB308
Lsi04G004970Silver-seed gourdcarlsiB764
Lsi04G004970Cucumber (Chinese Long) v3cuclsiB057