CmoCh04G001800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G001800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionThioredoxin h
LocationCmo_Chr04 : 918125 .. 920787 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCTGCGTGGTCCTGAAATTCTCCAGTCCCACATCGCTATTTCTTAATATCCCCTCCTCTTCGACTCCTATAAATTCACCCGCTCAGCTCTCAACTCTCCATTCAGTTTAATACACAGTTCCCATTTCTTCTTTCTTTTCCTTTTCCTTTTGTTCTGTAAGCGACTTCAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGGTACACTTTTTTCCTTCCTTTTTCTTTTCACCACGCATACAACAAATCTCATTCTAGTATTCTTTTCAACAGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGGTATGTTCCAAACTCTTCGATCTGAGAAATTCACTTACTTCTAGGACGCAACAACCGTAACAATAACTGTGATTATCATTGTAGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTGTCTAAACATAGCGCATGAAGCTGGTCTTTTCATCAGAATTTGCTTTTCATAAATAAACAACAATGCTGCAAAGAAACATTAAATGTTGTGCAACAAATTTACACGTTTATGTTCTATGGAGATGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGGATTAATAAATCTTTTGTTCTATTTAATTAAGGCAGAGAATATATTCAAAAATTTTATTATAATTAAGAATTCTGAATGTGGAATGCTAGAAAAGAATTTTCGTAGTCTTCTAGCCATTAAATAACATTGCAATATGGGATTGGAATAGAAACCACAAATCTGAAAAGATTGTGACAATATATTTATCAATTATGAATTCAACCTTTTTTTTTTAGTTTTCTTTTTAAAAATAATATGTAATTAGCTAGACAAGAATACTCGATAAATACTCGATAAATGACCCCACTATTGGAGTCGAAAAATGCTAACATATACGATGTGAGATCTACTTTTATTTTGGACTTTATTTATTTATTTATTTTTAGTAAAGTTGAATGTATAGTACTCTTCTATACATGATTGGTGTATATACGTACAAATCCATTAGATGAGCTTGTATACGTATACTTTGGCTTAACTACAACTAGTGCATGTTCATGCTGTCGAAAACCAATAAAAAAGAAGAAAACACGTAAAATATCGAGGTGCACGCGTCCATATATAACATACTGGAGAAACAATCTATGCTCGTGTGATATACAATATTGATGAAATCCATGTATATTTATTCATGGTACATGAACCCGTAGGATTAAGGAATAAAGATAGAAAGGTGAAGAAAATTACACAACGTCAACTACACGTGAAAATGAACAACAATATTAGTTGTAATAAAGTAGAAAAAAATATGGAAAAGACAAAACCCACGTTCATGGGACGAACAAAAAAGAGACAAGCATCTATGCCTTTTAAGGTTAAAATTGTGCGTTAAACGCCATGAACAATACACATTCTTCAACTGCTCCAACACTGAAAATTAGTAGAGTTATATTTTCTGTTCCGCAGTTTTTTACGTTCATTATTTTGTCTATAAATTAGAAAAATTGGTATATAAAGCTTTTTAAAAAAGACCGTAACAATATCATACAATTATAGAAAGTCATAATTTTGTAGACAAATTCATGAGCTAAATATAAACATTCCTAAATAATTATGTTTGATGTAACGGATTATTATTACTTTTATCAAATAAAGTTTCTAATTAATATTATAAACATTACTACGATCTTGAGCTAACTATTAATATTATTATTATTTTAGTTTGGAGAGTGATTTTTTAAGAGAGTGGAAATGTTTACGGTTTTGTTTTCCTCTCCTTAACAGACATGTGTTTAAAACTATAAGGTCGAGGGGCAAAGCAGATAATATTTGTTGGCAGTGGTTTTTGGACCATTACATTCGGTATTAGAGCCAGTGATTAGATGATACTAGGCACCGATCGAAAAAGGGTTAGACCCCCTCTCCATAATAGGCTCGTTTTAAAACTGTGAGATTGATACCTATAGATAATGGACTAAAGCGAATAATATTACTAGAATTAAAAAAGAAAATAGAAATGAAATATTTAAATGTTGATCATGAAGAGCATGAACTTTGACTATTTGAAGTTTAGGCCTACATATTTTGAGCCCGGAGATTGACAAATACATGGGCAGGACATTGAAATCGAGGCCCAAAACAATTGAAAATTCTTGGTCCTTCTTCAATTAAATCAGCACAATTCTCCCTGGGTTGTCTCTAAGATAAGGCGCTAGCCGCTAGCTCCAATTTTCTGTTTCGTTCGTTCCCGAAAGAACGATCATCATCCAAAGCTTGTGCAGGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATGTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAATTTCTTTATTATACTTAA

mRNA sequence

GAGCTGCGTGGTCCTGAAATTCTCCAGTCCCACATCGCTATTTCTTAATATCCCCTCCTCTTCGACTCCTATAAATTCACCCGCTCAGCTCTCAACTCTCCATTCAGTTTAATACACAGTTCCCATTTCTTCTTTCTTTTCCTTTTCCTTTTGTTCTGTAAGCGACTTCAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATGTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAATTTCTTTATTATACTTAA

Coding sequence (CDS)

ATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATGTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAATTTCTTTATTATACTTAA
Homology
[Close]
BLAST of CmoCh04G001800 vs. Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD 104
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKE 104

[Close]
BLAST of CmoCh04G001800 vs. Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.2e-27
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C TV +W +Q  K      L+VV+FTA+WC PCR +AP L +LAKK   NVT
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKK-LPNVT 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           FLKVDVDEL +VA+E  V ++P+F F K G+++DK VGAKKD L  T+
Sbjct: 63  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTI 109

[Close]
BLAST of CmoCh04G001800 vs. Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T+
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

[Close]
BLAST of CmoCh04G001800 vs. Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-26
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C  +  W  Q   AKQ NKL+V++FTA+WC PCR +AP+  DLAKK  ++  
Sbjct: 3   AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           F KVDVDEL +VA E GV A+P+F   K+G +VDK VGA+K+ L  T+
Sbjct: 63  FFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATI 110

[Close]
BLAST of CmoCh04G001800 vs. Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-25
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+  +V++C TV  W ++F KAK   KL+V++FTA+WC PCR + P + +LAKK   +V
Sbjct: 1   MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKF-PHV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            F KVDVD+L  VA E  V A+PSF   K GQ V++ VGA+KD LL+ +
Sbjct: 61  AFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKI 108

[Close]
BLAST of CmoCh04G001800 vs. TrEMBL
Match: A0A0A0KSB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-43
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TV SWKQQ LKAKQ NKL+VVNFTATWC PCR MAP+L+DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           TFLKVDVDELMSVA+E GVGALPSFQFFKNG+LVDKFVGA+KD+L  TV
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTV 109

[Close]
BLAST of CmoCh04G001800 vs. TrEMBL
Match: A0A0A0KLS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.6e-40
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK LL NT+
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTI 109

[Close]
BLAST of CmoCh04G001800 vs. TrEMBL
Match: A0A0A0KLR8_CUCSA (Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 74/109 (67.89%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+ C T+ SW QQ LKA+Q+NKLLVVNFTA WC PC AMA +L++LAKK  NNV
Sbjct: 1   MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKM-NNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            FLKVD+DEL +VANE  V ALPS+ F KNG+LV+KF GAKKD+L +TV
Sbjct: 61  IFLKVDIDELNTVANEFEVTALPSYHFLKNGRLVEKFEGAKKDVLKSTV 108

[Close]
BLAST of CmoCh04G001800 vs. TrEMBL
Match: A0A0A0LGF7_CUCSA (Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+  +V++C TV SWKQQ LK KQ +KL+VV+FTA WC PCRA+AP+  +LA+K  +NV
Sbjct: 1   MAEKSQVIACHTVESWKQQLLKGKQFDKLIVVDFTAAWCGPCRAIAPVFVELAEK-MSNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            FLKVDVD+L +VA E GV ALP F F KNG++VD+FVGA+KD L   V
Sbjct: 61  IFLKVDVDKLTTVAAEWGVSALPCFMFLKNGKMVDRFVGARKDALRKLV 108

[Close]
BLAST of CmoCh04G001800 vs. TrEMBL
Match: A0A118K3U1_CYNCS (Thioredoxin OS=Cynara cardunculus var. scolymus GN=Ccrd_015123 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-26
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1 

Query: 5   GKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVTFLK 64
           G VVSC   G W   F K     KL+VV+FTA+WC PCR +AP+LDD A+K  NNV FLK
Sbjct: 4   GVVVSCHNAGQWNTHFNKHASSGKLVVVDFTASWCGPCRIIAPVLDDFARKF-NNVVFLK 63

Query: 65  VDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVE 111
           VDVDEL SVA +  V A+P+F FFKNGQ+VDK VGAKKD L + ++
Sbjct: 64  VDVDELESVAQKYFVEAMPTFLFFKNGQVVDKVVGAKKDKLHSRIK 108

[Close]
BLAST of CmoCh04G001800 vs. TAIR10
Match: AT1G19730.1 (AT1G19730.1 Thioredoxin superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-29
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD 104
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKE 104

[Close]
BLAST of CmoCh04G001800 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1)

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-28
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T+
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

[Close]
BLAST of CmoCh04G001800 vs. TAIR10
Match: AT1G45145.1 (AT1G45145.1 thioredoxin H-type 5)

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-25
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C T+  W ++   A +  KL+V++FTA+WC PCR +AP+  ++AKK   NV
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKF-TNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD 104
            F K+DVDEL +VA E  V A+P+F F K G ++D+ VGA KD
Sbjct: 61  VFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKD 102

[Close]
BLAST of CmoCh04G001800 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-24
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C TV  W ++   A +  KL+V++FTATWC PCR +AP+  DLAKK   +V
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHL-DV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVE 111
            F KVDVDEL +VA E  V A+P+F F K G++ +  VGA K+ ++  +E
Sbjct: 61  VFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLE 109

[Close]
BLAST of CmoCh04G001800 vs. TAIR10
Match: AT5G39950.1 (AT5G39950.1 thioredoxin 2)

HSP 1 Score: 94.7 bits (234), Expect = 5.2e-20
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++  +V+   +   W+  F + K+ NKLLVV+F+A+WC PCR + P +  +A K  N+V 
Sbjct: 22  SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKF-NDVD 81

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVEFL 113
           F+K+DVDEL  VA E  V A+P+F   K G+ +++ +GAKKD L   V  L
Sbjct: 82  FVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKL 131

[Close]
BLAST of CmoCh04G001800 vs. NCBI nr
Match: gi|659129896|ref|XP_008464900.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-43
Identity = 89/109 (81.65%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAP+L DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
             LKVDVDELMSVANE GVGALPSFQFFKNG+LVDKFVGA+KD+L  TV
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTV 109

[Close]
BLAST of CmoCh04G001800 vs. NCBI nr
Match: gi|449464452|ref|XP_004149943.1| (PREDICTED: thioredoxin H1-like [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 2.4e-43
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TV SWKQQ LKAKQ NKL+VVNFTATWC PCR MAP+L+DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           TFLKVDVDELMSVA+E GVGALPSFQFFKNG+LVDKFVGA+KD+L  TV
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTV 109

[Close]
BLAST of CmoCh04G001800 vs. NCBI nr
Match: gi|659129894|ref|XP_008464899.1| (PREDICTED: thioredoxin H-type-like [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 7.2e-40
Identity = 78/109 (71.56%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q+NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQYNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK+LL +T+
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKNLLQSTI 109

[Close]
BLAST of CmoCh04G001800 vs. NCBI nr
Match: gi|449464454|ref|XP_004149944.1| (PREDICTED: thioredoxin H-type-like [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK LL NT+
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTI 109

[Close]
BLAST of CmoCh04G001800 vs. NCBI nr
Match: gi|659129892|ref|XP_008464898.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 2.0e-34
Identity = 74/109 (67.89%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MAD+GKV++C T+ SW QQ LKA+Q+NKLLVVNFTA WC PC AMA +L++LAKK  NNV
Sbjct: 1   MADVGKVITCHTLASWNQQLLKAQQYNKLLVVNFTARWCGPCHAMASVLEELAKKM-NNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            FLKVD+DEL SVA E  V ALPS+ F KNG+LV+KF GAKKD+L +TV
Sbjct: 61  IFLKVDIDELNSVAKEFEVAALPSYHFLKNGRLVEKFEGAKKDVLKSTV 108

The following BLAST results are available for this feature:
BLAST of CmoCh04G001800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TRXH4_ARATH1.4e-2754.90Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2[more]
TRXH_RICCO9.2e-2753.70Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH1.6e-2651.85Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1[more]
TRXH2_BRANA3.5e-2650.93Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1[more]
TRXH_FAGES6.6e-2549.54Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1[more]
BLAST of CmoCh04G001800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSB1_CUCSA1.7e-4381.65Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1[more]
A0A0A0KLS7_CUCSA8.6e-4072.48Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1[more]
A0A0A0KLR8_CUCSA1.9e-3467.89Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1[more]
A0A0A0LGF7_CUCSA1.8e-2960.55Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1[more]
A0A118K3U1_CYNCS1.4e-2659.43Thioredoxin OS=Cynara cardunculus var. scolymus GN=Ccrd_015123 PE=4 SV=1[more]
BLAST of CmoCh04G001800 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G19730.18.0e-2954.90 Thioredoxin superfamily protein[more]
AT3G51030.18.8e-2851.85 thioredoxin H-type 1[more]
AT1G45145.19.1e-2547.57 thioredoxin H-type 5[more]
AT5G42980.12.0e-2447.27 thioredoxin 3[more]
AT5G39950.15.2e-2041.44 thioredoxin 2[more]
BLAST of CmoCh04G001800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129896|ref|XP_008464900.1|1.4e-4381.65PREDICTED: thioredoxin H1-like [Cucumis melo][more]
gi|449464452|ref|XP_004149943.1|2.4e-4381.65PREDICTED: thioredoxin H1-like [Cucumis sativus][more]
gi|659129894|ref|XP_008464899.1|7.2e-4071.56PREDICTED: thioredoxin H-type-like [Cucumis melo][more]
gi|449464454|ref|XP_004149944.1|1.2e-3972.48PREDICTED: thioredoxin H-type-like [Cucumis sativus][more]
gi|659129892|ref|XP_008464898.1|2.0e-3467.89PREDICTED: thioredoxin H1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005623 cell
cellular_component GO:0005575 cellular_component
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G001800.1CmoCh04G001800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 1..137
score: 8.1
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 17..110
score: 5.3
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 5..110
score: 1.96
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 19..109
score: 2.3
IPR013766Thioredoxin domainPROFILEPS51352THIOREDOXIN_2coord: 1..114
score: 11
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 38..47
score: 2.2E-5coord: 30..38
score: 2.2E-5coord: 78..89
score: 2.
NoneNo IPR availablePANTHERPTHR10438:SF274THIOREDOXIN H1coord: 1..137
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G001800Cucsa.164810Cucumber (Gy14) v1cgycmoB0474
CmoCh04G001800CmaCh04G001780Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G001800Csa5G190490Cucumber (Chinese Long) v2cmocuB737
CmoCh04G001800MELO3C026569Melon (DHL92) v3.5.1cmomeB646
CmoCh04G001800CSPI05G10150Wild cucumber (PI 183967)cmocpiB747
CmoCh04G001800Lsi04G009290Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G001800Cp4.1LG01g05210Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G001800MELO3C026569.2Melon (DHL92) v3.6.1cmomedB733
CmoCh04G001800CsaV3_5G008640Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G001800Bhi07G000596Wax gourdcmowgoB0912
CmoCh04G001800Carg18348Silver-seed gourdcarcmoB0123
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G001800Cucumber (Chinese Long) v3cmocucB0906
CmoCh04G001800Watermelon (97103) v2cmowmbB695
CmoCh04G001800Watermelon (97103) v2cmowmbB722
CmoCh04G001800Watermelon (97103) v2cmowmbB755
CmoCh04G001800Wax gourdcmowgoB0864
CmoCh04G001800Wax gourdcmowgoB0889
CmoCh04G001800Cucurbita moschata (Rifu)cmocmoB267
CmoCh04G001800Cucurbita moschata (Rifu)cmocmoB448
CmoCh04G001800Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G001800Cucumber (Gy14) v1cgycmoB0373
CmoCh04G001800Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G001800Wild cucumber (PI 183967)cmocpiB776
CmoCh04G001800Cucumber (Chinese Long) v2cmocuB767
CmoCh04G001800Melon (DHL92) v3.5.1cmomeB676
CmoCh04G001800Watermelon (Charleston Gray)cmowcgB630
CmoCh04G001800Watermelon (Charleston Gray)cmowcgB676
CmoCh04G001800Watermelon (97103) v1cmowmB673
CmoCh04G001800Watermelon (97103) v1cmowmB737
CmoCh04G001800Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G001800Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G001800Bottle gourd (USVL1VR-Ls)cmolsiB630
CmoCh04G001800Bottle gourd (USVL1VR-Ls)cmolsiB649
CmoCh04G001800Bottle gourd (USVL1VR-Ls)cmolsiB658
CmoCh04G001800Cucumber (Gy14) v2cgybcmoB522
CmoCh04G001800Cucumber (Gy14) v2cgybcmoB652
CmoCh04G001800Cucumber (Gy14) v2cgybcmoB823
CmoCh04G001800Melon (DHL92) v3.6.1cmomedB798
CmoCh04G001800Silver-seed gourdcarcmoB0372
CmoCh04G001800Silver-seed gourdcarcmoB0755
CmoCh04G001800Silver-seed gourdcarcmoB0924