Carg18348 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18348
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Thioredoxin
Location	Cucurbita_argyrosperma_scaffold_106 : 221154 .. 221831 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACATGGGGAAAGTGGTTTCTTGCCCCACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGGTACTCTTTATTTCCTTCCTTTCTCTTTTCACCACGCATACAACAAATCTCATTATAGTATTCTTTTCAACAGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGGTATGTTCCAAACTCTTCGATCTGAGAAATTCACTTACTTCTAGGACGCAACAACCGTAACAATAACTGTGATTATCATTGTAGAGTGTTGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTGTCTAAACATAGCGCATGAAGCTGGTCTTTTCATCAGAATTTGCTTTTCATAAATAAACAACAATGCTGCAAAGAAACATTAAATGTTGTGCAACAAATTTACACGTTTATGTTCTATGGAGATGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGGATTAATAAATCTTTTGTTCTTCCAAACC

mRNA sequence

ATGGCGGACATGGGGAAAGTGGTTTCTTGCCCCACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTTGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTGTCTAAACATAGCGCATGAAGCTGGTCTTTTCATCAGAATTTGCTTTTCATAAATAAACAACAATGCTGCAAAGAAACATTAAATGTTGTGCAACAAATTTACACGTTTATGTTCTATGGAGATGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGGATTAATAAATCTTTTGTTCTTCCAAACC

Coding sequence (CDS)

ATGGCGGACATGGGGAAAGTGGTTTCTTGCCCCACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTTGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTGTCTAAACATAGCGCATGA

Protein sequence

MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVTFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA

Homology

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BLAST of Carg18348 vs. NCBI nr
Match: XP_022942758.1 (thioredoxin H1-like [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 2.6e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
           TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA
Sbjct: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 114

[Close]

BLAST of Carg18348 vs. NCBI nr
Match: XP_023549191.1 (thioredoxin H4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-57
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTV SWK+QFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
           TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD+LLNTVSKH+A
Sbjct: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 114

[Close]

BLAST of Carg18348 vs. NCBI nr
Match: XP_022996723.1 (thioredoxin H-type-like [Cucurbita maxima])

HSP 1 Score: 229.6 bits (584), Expect = 5.5e-57
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAP+LD+LAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
           TFLKVDVD+LMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD+LLN VSKHSA
Sbjct: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 114

[Close]

BLAST of Carg18348 vs. NCBI nr
Match: XP_008464900.1 (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 9.7e-46
Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAP+L DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
             LKVDVDELMSVANE GVGALPSFQFFKNG+LVDKFVGA+KD+L  TVSKH A
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Carg18348 vs. NCBI nr
Match: XP_022139257.1 (thioredoxin H1-like [Momordica charantia])

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 92/114 (80.70%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKVVSC +VGSWKQQ LKAK++NKL+VV FTATWC PCRAMAP+L+DLAKK+ +NV
Sbjct: 1   MAEMGKVVSCRSVGSWKQQLLKAKKYNKLVVVKFTATWCGPCRAMAPVLEDLAKKT-SNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
            FLKVDVDELM VANELGVGA+PSFQFFKNG+LVDKFVGA KDLL NT+SKH+A
Sbjct: 61  IFLKVDVDELMRVANELGVGAIPSFQFFKNGKLVDKFVGANKDLLTNTLSKHAA 113

[Close]

BLAST of Carg18348 vs. TAIR10
Match: AT1G19730.1 (Thioredoxin superfamily protein)

HSP 1 Score: 127.9 bits (320), Expect = 4.1e-30
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHS 114
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+ L   + KH+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]

BLAST of Carg18348 vs. TAIR10
Match: AT3G51030.1 (thioredoxin H-type 1)

HSP 1 Score: 127.1 bits (318), Expect = 6.9e-30
Identity = 59/113 (52.21%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T++KH A
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Carg18348 vs. TAIR10
Match: AT1G45145.1 (thioredoxin H-type 5)

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-25
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C T+  W ++   A +  KL+V++FTA+WC PCR +AP+  ++AKK   NV
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKK-FTNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKH 113
            F K+DVDEL +VA E  V A+P+F F K G ++D+ VGA KD +   + KH
Sbjct: 61  VFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111

[Close]

BLAST of Carg18348 vs. TAIR10
Match: AT5G42980.1 (thioredoxin 3)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-25
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C TV  W ++   A +  KL+V++FTATWC PCR +AP+  DLAKK   +V
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHL-DV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKH 113
            F KVDVDEL +VA E  V A+P+F F K G++ +  VGA K+ ++  + KH
Sbjct: 61  VFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111

[Close]

BLAST of Carg18348 vs. TAIR10
Match: AT5G39950.1 (thioredoxin 2)

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-21
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++  +V+   +   W+  F + K+ NKLLVV+F+A+WC PCR + P +  +A K  N+V 
Sbjct: 22  SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADK-FNDVD 81

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSK 112
           F+K+DVDEL  VA E  V A+P+F   K G+ +++ +GAKKD L   VSK
Sbjct: 82  FVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130

[Close]

BLAST of Carg18348 vs. Swiss-Prot
Match: sp|Q43636|TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-29
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C TV +W +Q  K      L+VV+FTA+WC PCR +AP L +LAKK   NVT
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKK-LPNVT 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
           FLKVDVDEL +VA+E  V ++P+F F K G+++DK VGAKKD L  T++KH A
Sbjct: 63  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMA 114

[Close]

BLAST of Carg18348 vs. Swiss-Prot
Match: sp|Q39239|TRXH4_ARATH (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=3 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-29
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHS 114
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+ L   + KH+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]

BLAST of Carg18348 vs. Swiss-Prot
Match: sp|P29448|TRXH1_ARATH (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-28
Identity = 59/113 (52.21%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T++KH A
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Carg18348 vs. Swiss-Prot
Match: sp|Q39362|TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-28
Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C  +  W  Q   AKQ NKL+V++FTA+WC PCR +AP+  DLAKK  ++  
Sbjct: 3   AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHS 114
           F KVDVDEL +VA E GV A+P+F   K+G +VDK VGA+K+ L  T++KH+
Sbjct: 63  FFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHT 114

[Close]

BLAST of Carg18348 vs. Swiss-Prot
Match: sp|Q07090|TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-26
Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+ G+V+   TV +W +   K     KL+VV+FTA+WC PC+ +A    +LAKK    V
Sbjct: 1   MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKK-MPTV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKH 113
           TFLKVDVDEL SVA +  V A+P+F F K G++VDK VGAKKD L  T++KH
Sbjct: 61  TFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111

[Close]

BLAST of Carg18348 vs. TrEMBL
Match: tr|A0A1S3CMM6|A0A1S3CMM6_CUCME (Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103502660 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.4e-46
Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAP+L DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
             LKVDVDELMSVANE GVGALPSFQFFKNG+LVDKFVGA+KD+L  TVSKH A
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Carg18348 vs. TrEMBL
Match: tr|A0A0A0KSB1|A0A0A0KSB1_CUCSA (Thioredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G190500 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 93/114 (81.58%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TV SWKQQ LKAKQ NKL+VVNFTATWC PCR MAP+L+DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
           TFLKVDVDELMSVA+E GVGALPSFQFFKNG+LVDKFVGA+KD+L  TVSKH A
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Carg18348 vs. TrEMBL
Match: tr|A0A1S3CMJ1|A0A1S3CMJ1_CUCME (Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103502659 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.6e-43
Identity = 83/114 (72.81%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q+NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQYNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK+LL +T+SKHSA
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKNLLQSTISKHSA 114

[Close]

BLAST of Carg18348 vs. TrEMBL
Match: tr|A0A0A0KLS7|A0A0A0KLS7_CUCSA (Thioredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G190490 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 84/114 (73.68%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHSA 115
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK LL NT+SKHSA
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTISKHSA 114

[Close]

BLAST of Carg18348 vs. TrEMBL
Match: tr|A0A1S4E4X3|A0A1S4E4X3_CUCME (Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103502658 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MAD+GKV++C T+ SW QQ LKA+Q+NKLLVVNFTA WC PC AMA +L++LAKK  NNV
Sbjct: 1   MADVGKVITCHTLASWNQQLLKAQQYNKLLVVNFTARWCGPCHAMASVLEELAKK-MNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKHS 114
            FLKVD+DEL SVA E  V ALPS+ F KNG+LV+KF GAKKD+L +TVSKH+
Sbjct: 61  IFLKVDIDELNSVAKEFEVAALPSYHFLKNGRLVEKFEGAKKDVLKSTVSKHA 112

The following BLAST results are available for this feature:

BLAST of Carg18348 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942758.1	2.6e-59	100.00	thioredoxin H1-like [Cucurbita moschata]	[more]
XP_023549191.1	1.9e-57	96.49	thioredoxin H4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996723.1	5.5e-57	95.61	thioredoxin H-type-like [Cucurbita maxima]	[more]
XP_008464900.1	9.7e-46	81.58	PREDICTED: thioredoxin H1-like [Cucumis melo]	[more]
XP_022139257.1	1.3e-45	80.70	thioredoxin H1-like [Momordica charantia]	[more]

BLAST of Carg18348 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19730.1	4.1e-30	52.68	Thioredoxin superfamily protein	[more]
AT3G51030.1	6.9e-30	52.21	thioredoxin H-type 1	[more]
AT1G45145.1	1.0e-25	45.54	thioredoxin H-type 5	[more]
AT5G42980.1	1.8e-25	47.32	thioredoxin 3	[more]
AT5G39950.1	4.5e-21	42.73	thioredoxin 2	[more]

BLAST of Carg18348 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q43636\|TRXH_RICCO	5.6e-29	53.98	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
sp\|Q39239\|TRXH4_ARATH	7.3e-29	52.68	Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=3 SV=2	[more]
sp\|P29448\|TRXH1_ARATH	1.3e-28	52.21	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
sp\|Q39362\|TRXH2_BRANA	3.6e-28	50.89	Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1	[more]
sp\|Q07090\|TRXH2_TOBAC	4.4e-26	51.79	Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1	[more]

BLAST of Carg18348 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CMM6\|A0A1S3CMM6_CUCME	6.4e-46	81.58	Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103502660 PE=3 SV=1	[more]
tr\|A0A0A0KSB1\|A0A0A0KSB1_CUCSA	1.1e-45	81.58	Thioredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G190500 PE=3 SV=1	[more]
tr\|A0A1S3CMJ1\|A0A1S3CMJ1_CUCME	6.6e-43	72.81	Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103502659 PE=3 SV=1	[more]
tr\|A0A0A0KLS7\|A0A0A0KLS7_CUCSA	1.1e-42	73.68	Thioredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G190490 PE=3 SV=1	[more]
tr\|A0A1S4E4X3\|A0A1S4E4X3_CUCME	1.2e-36	68.14	Thioredoxin OS=Cucumis melo OX=3656 GN=LOC103502658 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR013766	Thioredoxin_domain
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18348-RA	Carg18348-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 78..89 score: 35.09 coord: 38..47 score: 56.94 coord: 30..38 score: 47.59
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 1..113 e-value: 1.2E-31 score: 111.0
None	No IPR available	PANTHER	PTHR10438:SF293	SUBFAMILY NOT NAMED	coord: 1..113
None	No IPR available	CDD	cd02947	TRX_family	coord: 18..100 e-value: 8.36248E-32 score: 108.414
IPR005746	Thioredoxin	PIRSF	PIRSF000077	Thioredoxin	coord: 6..113 e-value: 1.8E-26 score: 90.1
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..113
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 19..112 e-value: 2.7E-26 score: 91.4
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..114 score: 12.065
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 5..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18348	Cla003972	Watermelon (97103) v1	carwmB0087
Carg18348	Csa5G190490	Cucumber (Chinese Long) v2	carcuB0098
Carg18348	MELO3C026569	Melon (DHL92) v3.5.1	carmeB0089
Carg18348	CSPI05G10150	Wild cucumber (PI 183967)	carcpiB0102
Carg18348	Cucsa.164810	Cucumber (Gy14) v1	carcgyB0108
Carg18348	CmaCh04G001780	Cucurbita maxima (Rimu)	carcmaB0115
Carg18348	CmoCh04G001800	Cucurbita moschata (Rifu)	carcmoB0123
Carg18348	Lsi04G009290	Bottle gourd (USVL1VR-Ls)	carlsiB080
Carg18348	Cp4.1LG01g05210	Cucurbita pepo (Zucchini)	carcpeB0130
Carg18348	CsGy5G007460	Cucumber (Gy14) v2	carcgybB0098
Carg18348	MELO3C026569.2	Melon (DHL92) v3.6.1	carmedB0091
Carg18348	CsaV3_5G008640	Cucumber (Chinese Long) v3	carcucB0105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18348	Silver-seed gourd	carcarB095
Carg18348	Silver-seed gourd	carcarB096
Carg18348	Silver-seed gourd	carcarB097
Carg18348	Silver-seed gourd	carcarB098
Carg18348	Silver-seed gourd	carcarB099
Carg18348	Silver-seed gourd	carcarB100
Carg18348	Cucumber (Gy14) v2	carcgybB0099
Carg18348	Cucumber (Gy14) v1	carcgyB0106
Carg18348	Cucumber (Gy14) v1	carcgyB0107
Carg18348	Cucurbita maxima (Rimu)	carcmaB0113
Carg18348	Cucurbita maxima (Rimu)	carcmaB0116
Carg18348	Cucurbita moschata (Rifu)	carcmoB0120
Carg18348	Cucurbita moschata (Rifu)	carcmoB0121
Carg18348	Cucurbita moschata (Rifu)	carcmoB0124
Carg18348	Cucurbita pepo (Zucchini)	carcpeB0129
Carg18348	Cucurbita pepo (Zucchini)	carcpeB0131
Carg18348	Cucurbita pepo (Zucchini)	carcpeB0132
Carg18348	Wild cucumber (PI 183967)	carcpiB0103
Carg18348	Wild cucumber (PI 183967)	carcpiB0104
Carg18348	Cucumber (Chinese Long) v2	carcuB0099
Carg18348	Cucumber (Chinese Long) v3	carcucB0106
Carg18348	Cucumber (Chinese Long) v3	carcucB0107
Carg18348	Bottle gourd (USVL1VR-Ls)	carlsiB079
Carg18348	Melon (DHL92) v3.5.1	carmeB0092
Carg18348	Melon (DHL92) v3.6.1	carmedB0093
Carg18348	Melon (DHL92) v3.6.1	carmedB0094
Carg18348	Watermelon (Charleston Gray)	carwcgB0090
Carg18348	Watermelon (97103) v2	carwmbB0088
Carg18348	Watermelon (97103) v2	carwmbB0089
Carg18348	Watermelon (97103) v2	carwmbB0090
Carg18348	Watermelon (97103) v2	carwmbB0091
Carg18348	Wax gourd	carwgoB0101
Carg18348	Wax gourd	carwgoB0102
Carg18348	Cucurbita pepo (Zucchini)	carcpeB0128