CmaCh04G001780 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G001780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionThioredoxin h family protein
LocationCma_Chr04 : 872188 .. 873035 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTCTCGAGTCCCACATCGCTATTTCTTAATTTCCCCTCCTCTTCAACTCCTATAAATTCACCCTCTCAGCTCTCAACTCTCCATTCAGTTTAATACACAGTTCCCATTTCTTCTTCCTTTTCCCTTTCCTTGTCCTTTTCTTCTGTAAAAGACTGCAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCCACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGGTACACTTTTTTCCTTCCTTTCTCTTTTCACCACGCATACAACAAATCTCATTCTAGTATTCTTTTCAACAGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCACCAGTGCTCGACGAGCTAGCAAAGAAATCGTGTAATAACGTGACATTCTTGAAAGTCGATGTTGATAAACTCATGGTATGTTCGAAACTCTCTGATCTGAGAAATTCACTTACTTCTAGGACGCAACGACCGTGACAATAACTGTGATTATCATTGTAGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATGTATTGCTCAACATCGTGTCTAAACATAGCGCATGAAGCTGGTCTTTTCATCAGAGTTTGCTTTCGTAAATAAACAACAATGCTGCAAAGAAACATGAAACGTTGTGCAACATATTTACACGTTTATGTTCTATGGAGATGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGGATTAATAAATCTTTTTTTCTTCCAAAACAACTATAAACACG

mRNA sequence

AATTCTCGAGTCCCACATCGCTATTTCTTAATTTCCCCTCCTCTTCAACTCCTATAAATTCACCCTCTCAGCTCTCAACTCTCCATTCAGTTTAATACACAGTTCCCATTTCTTCTTCCTTTTCCCTTTCCTTGTCCTTTTCTTCTGTAAAAGACTGCAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCCACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCACCAGTGCTCGACGAGCTAGCAAAGAAATCGTGTAATAACGTGACATTCTTGAAAGTCGATGTTGATAAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATGTATTGCTCAACATCGTGTCTAAACATAGCGCATGAAGCTGGTCTTTTCATCAGAGTTTGCTTTCGTAAATAAACAACAATGCTGCAAAGAAACATGAAACGTTGTGCAACATATTTACACGTTTATGTTCTATGGAGATGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGGATTAATAAATCTTTTTTTCTTCCAAAACAACTATAAACACG

Coding sequence (CDS)

ATGGCGGACATGGGGAAAGTGGTTTCTTGCCCCACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCACCAGTGCTCGACGAGCTAGCAAAGAAATCGTGTAATAACGTGACATTCTTGAAAGTCGATGTTGATAAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATGTATTGCTCAACATCGTGTCTAAACATAGCGCATGA

Protein sequence

MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVTFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA
Homology
[Close]
BLAST of CmaCh04G001780 vs. Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-28
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVT 61
           A+ G+V+ C TV +W +Q  K      L+VV+FTA+WC PCR +AP L ELAKK   NVT
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKK-LPNVT 62

Query: 62  FLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
           FLKVDVD+L +VA+E  V ++P+F F K G+++DK VGAKKD L   ++KH A
Sbjct: 63  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMA 114

[Close]
BLAST of CmaCh04G001780 vs. Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-28
Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ ++LAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
           F KVDVD+L SVA E GV A+P+F F K G++VDK VGA K+ L   + KH+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]
BLAST of CmaCh04G001780 vs. Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.2e-27
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVT 61
           A+ G+V+ C  +  W  Q   AKQ NKL+V++FTA+WC PCR +APV  +LAKK  ++  
Sbjct: 3   AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAI 62

Query: 62  FLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
           F KVDVD+L +VA E GV A+P+F   K+G +VDK VGA+K+ L   ++KH+
Sbjct: 63  FFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHT 114

[Close]
BLAST of CmaCh04G001780 vs. Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-27
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   +LAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
           FLKVD D+L SVA++  + A+P+F F K G+++DK VGAKKD L + ++KH A
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]
BLAST of CmaCh04G001780 vs. Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.7e-26
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA+  +V++C TV  W ++F KAK   KL+V++FTA+WC PCR + P + ELAKK   +V
Sbjct: 1   MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKF-PHV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
            F KVDVD L  VA E  V A+PSF   K GQ V++ VGA+KD LL+ ++ H+
Sbjct: 61  AFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHA 112

[Close]
BLAST of CmaCh04G001780 vs. TrEMBL
Match: A0A0A0KSB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.5e-45
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           M DMGKVVSC TV SWKQQ LKAKQ NKL+VVNFTATWC PCR MAPVL++LA K  NNV
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
           TFLKVDVD+LMSVA+E GVGALPSFQFFKNG+LVDKFVGA+KDVL   VSKH A
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]
BLAST of CmaCh04G001780 vs. TrEMBL
Match: A0A0A0KLS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.8e-42
Identity = 82/114 (71.93%), Postives = 97/114 (85.09%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q NKL+VVNFTA+WC PCR MAP+L+ELAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
            FLKVD+D+LMS+A E GV ++PSFQF KNG+LVDKFVGAKK +L N +SKHSA
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTISKHSA 114

[Close]
BLAST of CmaCh04G001780 vs. TrEMBL
Match: A0A0A0KLR8_CUCSA (Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA+MGKV+ C T+ SW QQ LKA+Q+NKLLVVNFTA WC PC AMA VL+ELAKK  NNV
Sbjct: 1   MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKKM-NNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
            FLKVD+D+L +VANE  V ALPS+ F KNG+LV+KF GAKKDVL + VSKH+
Sbjct: 61  IFLKVDIDELNTVANEFEVTALPSYHFLKNGRLVEKFEGAKKDVLKSTVSKHA 112

[Close]
BLAST of CmaCh04G001780 vs. TrEMBL
Match: A0A0A0LGF7_CUCSA (Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.8e-33
Identity = 71/113 (62.83%), Postives = 88/113 (77.88%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA+  +V++C TV SWKQQ LK KQ +KL+VV+FTA WC PCRA+APV  ELA+K  +NV
Sbjct: 1   MAEKSQVIACHTVESWKQQLLKGKQFDKLIVVDFTAAWCGPCRAIAPVFVELAEK-MSNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
            FLKVDVDKL +VA E GV ALP F F KNG++VD+FVGA+KD L  +VS H+
Sbjct: 61  IFLKVDVDKLTTVAAEWGVSALPCFMFLKNGKMVDRFVGARKDALRKLVSHHA 112

[Close]
BLAST of CmaCh04G001780 vs. TrEMBL
Match: Q8S3L3_9ROSI (Thioredoxin H OS=Populus tremula x Populus tremuloides PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-28
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA+ G+V++C TV +WK+ F K K   KL+VV+FTA+WC PC+ +AP+  ELAKK   NV
Sbjct: 1   MAEEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
           TFLKVDVD+L +VA E  V A+P+F F K+G+LVDK VGA KD L  +V+KH+
Sbjct: 61  TFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHA 112

[Close]
BLAST of CmaCh04G001780 vs. TAIR10
Match: AT1G19730.1 (AT1G19730.1 Thioredoxin superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-29
Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ ++LAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
           F KVDVD+L SVA E GV A+P+F F K G++VDK VGA K+ L   + KH+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]
BLAST of CmaCh04G001780 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1)

HSP 1 Score: 121.3 bits (303), Expect = 3.8e-28
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   +LAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
           FLKVD D+L SVA++  + A+P+F F K G+++DK VGAKKD L + ++KH A
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]
BLAST of CmaCh04G001780 vs. TAIR10
Match: AT1G45145.1 (AT1G45145.1 thioredoxin H-type 5)

HSP 1 Score: 114.0 bits (284), Expect = 6.1e-26
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA  G+V++C T+  W ++   A +  KL+V++FTA+WC PCR +APV  E+AKK   NV
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKF-TNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKH 113
            F K+DVD+L +VA E  V A+P+F F K G ++D+ VGA KD +   + KH
Sbjct: 61  VFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111

[Close]
BLAST of CmaCh04G001780 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-24
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA  G+V++C TV  W ++   A +  KL+V++FTATWC PCR +APV  +LAKK   +V
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHL-DV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKH 113
            F KVDVD+L +VA E  V A+P+F F K G++ +  VGA K+ ++  + KH
Sbjct: 61  VFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111

[Close]
BLAST of CmaCh04G001780 vs. TAIR10
Match: AT5G39950.1 (AT5G39950.1 thioredoxin 2)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-20
Identity = 46/110 (41.82%), Postives = 71/110 (64.55%), Query Frame = 1 

Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNVT 61
           ++  +V+   +   W+  F + K+ NKLLVV+F+A+WC PCR + P +  +A K  N+V 
Sbjct: 22  SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKF-NDVD 81

Query: 62  FLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSK 112
           F+K+DVD+L  VA E  V A+P+F   K G+ +++ +GAKKD L   VSK
Sbjct: 82  FVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130

[Close]
BLAST of CmaCh04G001780 vs. NCBI nr
Match: gi|659129896|ref|XP_008464900.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 5.5e-45
Identity = 92/114 (80.70%), Postives = 98/114 (85.96%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           M DMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAPVL +LA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
             LKVDVD+LMSVANE GVGALPSFQFFKNG+LVDKFVGA+KDVL   VSKH A
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]
BLAST of CmaCh04G001780 vs. NCBI nr
Match: gi|449464452|ref|XP_004149943.1| (PREDICTED: thioredoxin H1-like [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 9.4e-45
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           M DMGKVVSC TV SWKQQ LKAKQ NKL+VVNFTATWC PCR MAPVL++LA K  NNV
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
           TFLKVDVD+LMSVA+E GVGALPSFQFFKNG+LVDKFVGA+KDVL   VSKH A
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]
BLAST of CmaCh04G001780 vs. NCBI nr
Match: gi|659129894|ref|XP_008464899.1| (PREDICTED: thioredoxin H-type-like [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 7.4e-42
Identity = 81/114 (71.05%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q+NKL+VVNFTA+WC PCR MAP+L+ELAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQYNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
            FLKVD+D+LMS+A E GV ++PSFQF KNG+LVDKFVGAKK++L + +SKHSA
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKNLLQSTISKHSA 114

[Close]
BLAST of CmaCh04G001780 vs. NCBI nr
Match: gi|449464454|ref|XP_004149944.1| (PREDICTED: thioredoxin H-type-like [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-41
Identity = 82/114 (71.93%), Postives = 97/114 (85.09%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MA+MGKV+SC TV SWKQ  LKA+Q NKL+VVNFTA+WC PCR MAP+L+ELAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHSA 115
            FLKVD+D+LMS+A E GV ++PSFQF KNG+LVDKFVGAKK +L N +SKHSA
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTISKHSA 114

[Close]
BLAST of CmaCh04G001780 vs. NCBI nr
Match: gi|659129892|ref|XP_008464898.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 1 

Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60
           MAD+GKV++C T+ SW QQ LKA+Q+NKLLVVNFTA WC PC AMA VL+ELAKK  NNV
Sbjct: 1   MADVGKVITCHTLASWNQQLLKAQQYNKLLVVNFTARWCGPCHAMASVLEELAKKM-NNV 60

Query: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIVSKHS 114
            FLKVD+D+L SVA E  V ALPS+ F KNG+LV+KF GAKKDVL + VSKH+
Sbjct: 61  IFLKVDIDELNSVAKEFEVAALPSYHFLKNGRLVEKFEGAKKDVLKSTVSKHA 112

The following BLAST results are available for this feature:
BLAST of CmaCh04G001780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TRXH_RICCO4.7e-2853.10Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH4_ARATH6.1e-2850.89Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2[more]
TRXH2_BRANA5.2e-2749.11Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1[more]
TRXH1_ARATH6.8e-2749.56Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1[more]
TRXH_FAGES5.7e-2649.56Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1[more]
BLAST of CmaCh04G001780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSB1_CUCSA6.5e-4580.70Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1[more]
A0A0A0KLS7_CUCSA8.8e-4271.93Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1[more]
A0A0A0KLR8_CUCSA1.1e-3669.03Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1[more]
A0A0A0LGF7_CUCSA9.8e-3362.83Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1[more]
Q8S3L3_9ROSI3.3e-2856.64Thioredoxin H OS=Populus tremula x Populus tremuloides PE=1 SV=1[more]
BLAST of CmaCh04G001780 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G19730.13.4e-2950.89 Thioredoxin superfamily protein[more]
AT3G51030.13.8e-2849.56 thioredoxin H-type 1[more]
AT1G45145.16.1e-2646.43 thioredoxin H-type 5[more]
AT5G42980.11.1e-2446.43 thioredoxin 3[more]
AT5G39950.11.0e-2041.82 thioredoxin 2[more]
BLAST of CmaCh04G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129896|ref|XP_008464900.1|5.5e-4580.70PREDICTED: thioredoxin H1-like [Cucumis melo][more]
gi|449464452|ref|XP_004149943.1|9.4e-4580.70PREDICTED: thioredoxin H1-like [Cucumis sativus][more]
gi|659129894|ref|XP_008464899.1|7.4e-4271.05PREDICTED: thioredoxin H-type-like [Cucumis melo][more]
gi|449464454|ref|XP_004149944.1|1.3e-4171.93PREDICTED: thioredoxin H-type-like [Cucumis sativus][more]
gi|659129892|ref|XP_008464898.1|1.2e-3669.03PREDICTED: thioredoxin H1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005623 cell
cellular_component GO:0005575 cellular_component
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G001780.1CmaCh04G001780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 1..114
score: 5.1
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 17..112
score: 2.5
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 5..112
score: 9.31
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 19..112
score: 8.7
IPR013766Thioredoxin domainPROFILEPS51352THIOREDOXIN_2coord: 1..114
score: 12
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 78..89
score: 1.2E-5coord: 38..47
score: 1.2E-5coord: 30..38
score: 1.
NoneNo IPR availablePANTHERPTHR10438:SF293SUBFAMILY NOT NAMEDcoord: 1..114
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G001780Cucsa.164810Cucumber (Gy14) v1cgycmaB0471
CmaCh04G001780Csa5G190490Cucumber (Chinese Long) v2cmacuB747
CmaCh04G001780MELO3C026569Melon (DHL92) v3.5.1cmameB654
CmaCh04G001780CSPI05G10150Wild cucumber (PI 183967)cmacpiB757
CmaCh04G001780CmoCh04G001800Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G001780Lsi04G009290Bottle gourd (USVL1VR-Ls)cmalsiB677
CmaCh04G001780Cp4.1LG01g05210Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G001780MELO3C026569.2Melon (DHL92) v3.6.1cmamedB738
CmaCh04G001780CsaV3_5G008640Cucumber (Chinese Long) v3cmacucB0883
CmaCh04G001780Bhi07G000596Wax gourdcmawgoB0912
CmaCh04G001780Carg18348Silver-seed gourdcarcmaB0115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G001780Cucurbita maxima (Rimu)cmacmaB333
CmaCh04G001780Cucurbita maxima (Rimu)cmacmaB514
CmaCh04G001780Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G001780Cucurbita maxima (Rimu)cmacmaB534
CmaCh04G001780Cucurbita maxima (Rimu)cmacmaB547
CmaCh04G001780Cucumber (Gy14) v1cgycmaB0376
CmaCh04G001780Cucurbita moschata (Rifu)cmacmoB725
CmaCh04G001780Cucurbita moschata (Rifu)cmacmoB730
CmaCh04G001780Wild cucumber (PI 183967)cmacpiB784
CmaCh04G001780Cucumber (Chinese Long) v2cmacuB774
CmaCh04G001780Melon (DHL92) v3.5.1cmameB683
CmaCh04G001780Melon (DHL92) v3.5.1cmameB712
CmaCh04G001780Watermelon (Charleston Gray)cmawcgB625
CmaCh04G001780Watermelon (Charleston Gray)cmawcgB651
CmaCh04G001780Watermelon (Charleston Gray)cmawcgB674
CmaCh04G001780Watermelon (97103) v1cmawmB679
CmaCh04G001780Watermelon (97103) v1cmawmB742
CmaCh04G001780Cucurbita pepo (Zucchini)cmacpeB722
CmaCh04G001780Bottle gourd (USVL1VR-Ls)cmalsiB644
CmaCh04G001780Bottle gourd (USVL1VR-Ls)cmalsiB660
CmaCh04G001780Bottle gourd (USVL1VR-Ls)cmalsiB661
CmaCh04G001780Cucumber (Gy14) v2cgybcmaB411
CmaCh04G001780Cucumber (Gy14) v2cgybcmaB548
CmaCh04G001780Cucumber (Gy14) v2cgybcmaB674
CmaCh04G001780Cucumber (Gy14) v2cgybcmaB842
CmaCh04G001780Melon (DHL92) v3.6.1cmamedB767
CmaCh04G001780Melon (DHL92) v3.6.1cmamedB800
CmaCh04G001780Silver-seed gourdcarcmaB0214
CmaCh04G001780Silver-seed gourdcarcmaB0376
CmaCh04G001780Silver-seed gourdcarcmaB0949
CmaCh04G001780Silver-seed gourdcarcmaB1385
CmaCh04G001780Cucumber (Chinese Long) v3cmacucB0913
CmaCh04G001780Watermelon (97103) v2cmawmbB720
CmaCh04G001780Watermelon (97103) v2cmawmbB729
CmaCh04G001780Watermelon (97103) v2cmawmbB751
CmaCh04G001780Watermelon (97103) v2cmawmbB781
CmaCh04G001780Wax gourdcmawgoB0865
CmaCh04G001780Wax gourdcmawgoB0890