CmoCh04G000480 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G000480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plastid movement impaired protein
Location	Cmo_Chr04 : 278172 .. 279219 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGCTTCTTTGTTTGACCAAAAGAAGGAAACCGCTTTTTAAGGCCATCAAACAAAGTGTTGTATATTATAAGATTGTGTGTTATACGCCACACCCACCGCCTATCTTCGCTCATTCCCTTTTGGGCGCCATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCACCGGGGAAACCATGAAGCTAAACACCCCGGTTCAAGCCGGAGACGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCTGTGAAGCACTACGGTGTCCGCGCGAAGCCGTTGGAACCCCACCAAAACCTCAGCAGGAAGCGCCTCTATTTTCTGGTGGACCTGCCTAAGCTTCCAAACCAACCGGTAATCAAATTACAAACTTAACTAATTAATTACTCTACGTTTAACCCTTTTATTCATATTCTTATTCTTATTCTCAATACAGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAGCCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACGACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCCAAAAGTGCGCCAAAACAGGAGAAGGAGGATGGCATCAAGCCACGTGAGGTGCGTATGCCTTTTACTTTTTCATCTTTTATTATTATTATTATTGCATTTTACTTTAATTAAATTTATAATTCACTTTTATTCGTTTAAATGGATGACCCCAAGTTGACTCACTCACTATCCAATGACTCAATATATTTAATTTCATTTGTTTTTTTTTTCTTTTGCCAAAACCACATCAACATCTTATTATAAATATCCATAGAATATTATACCTTCAAATTTGTTTCTTTTTAGAAAATATCTTGA

mRNA sequence

CTTTGGCTTCTTTGTTTGACCAAAAGAAGGAAACCGCTTTTTAAGGCCATCAAACAAAGTGTTGTATATTATAAGATTGTGTGTTATACGCCACACCCACCGCCTATCTTCGCTCATTCCCTTTTGGGCGCCATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCACCGGGGAAACCATGAAGCTAAACACCCCGGTTCAAGCCGGAGACGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCTGTGAAGCACTACGGTGTCCGCGCGAAGCCGTTGGAACCCCACCAAAACCTCAGCAGGAAGCGCCTCTATTTTCTGGTGGACCTGCCTAAGCTTCCAAACCAACCGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAGCCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACGACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCCAAAAGTGCGCCAAAACAGGAGAAGGAGGATGGCATCAAGCCACGTGAGAAAATATCTTGA

Coding sequence (CDS)

ATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCACCGGGGAAACCATGAAGCTAAACACCCCGGTTCAAGCCGGAGACGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCTGTGAAGCACTACGGTGTCCGCGCGAAGCCGTTGGAACCCCACCAAAACCTCAGCAGGAAGCGCCTCTATTTTCTGGTGGACCTGCCTAAGCTTCCAAACCAACCGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAGCCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACGACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCCAAAAGTGCGCCAAAACAGGAGAAGGAGGATGGCATCAAGCCACGTGAGAAAATATCTTGA

Homology

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BLAST of CmoCh04G000480 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-38
Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = 1


Query: 1   MGNAFGGK-KTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEP 60
           MGN+   K K  KVMK+ GET ++ TPV A +V  DYPG+VLLDS+AVKH+GVR+KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  HQNLSRKRLYFLVDLPKLP---------NQPPPRRIRSAIHMSAKDRLESLMLARRSASD 120
           +Q L  K+ YFLV+LPKLP         N+ P RR+ S IH+ AK+RL+ LML+RR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 LTIMKPKSVLAEEDAGEG---SSGAGTTRLKVRLPRAEVEKLLKESKDKGEA-AEKIVGL 168
           +TI          D G+G     G G T +++RLPR+++ KL++E+ +   A AEKI+G+
Sbjct: 121 VTI-------GRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGI 174

[Close]

BLAST of CmoCh04G000480 vs. TrEMBL
Match: A0A061E984_THECC (Encodes a protein whose expression is responsive to nematode infection, putative OS=Theobroma cacao GN=TCM_047008 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.3e-53
Identity = 111/166 (66.87%), Postives = 137/166 (82.53%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ GGKKT KVMK+ GET KL TPV+A +VVKDYPG VLL+SE+VKH+G+RAKPL+ H
Sbjct: 1   MGNSLGGKKTTKVMKINGETFKLKTPVKAEEVVKDYPGHVLLESESVKHFGIRAKPLQSH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q+L  KRLYFLV+LP+ P +   RR+RS I+MSAKDRLESLML+RRS SDLT+MKPK V+
Sbjct: 61  QSLEPKRLYFLVELPEAPKEIVTRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPKCVI 120

Query: 121 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGL 167
            EE   EGS  +G  R+K+RLPRAEVE+L+KES ++ EAAEKI+ L
Sbjct: 121 PEESEEEGSE-SGAMRVKMRLPRAEVERLMKESNNEAEAAEKIMQL 165

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BLAST of CmoCh04G000480 vs. TrEMBL
Match: B9HJA1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.6e-53
Identity = 110/166 (66.27%), Postives = 134/166 (80.72%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN  GGKKT KVMK+ GET K  TPV+AGDVVKDYPG VLL+SEAVKHYG+RAKPLE H
Sbjct: 1   MGNTLGGKKTAKVMKINGETFKFKTPVKAGDVVKDYPGHVLLESEAVKHYGIRAKPLEAH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q+L  KRLYFLV+LP+ P +  PRR+RS I+MSAKDRLESLML+RRS SDL+IMKP S++
Sbjct: 61  QDLVPKRLYFLVELPETPTERVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPSSIV 120

Query: 121 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGL 167
           +EE      +  G  R+K+RLP+ +VEKL++ESKD+ EAA KI+ L
Sbjct: 121 SEE------AKRGAMRVKMRLPKEQVEKLMQESKDEAEAAAKILDL 160

[Close]

BLAST of CmoCh04G000480 vs. TrEMBL
Match: B9HW76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12400g PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.7e-53
Identity = 124/205 (60.49%), Postives = 148/205 (72.20%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ G KKT KVMK++GET K  TPV+AG+VVKDYPG VLL+SEAVKHYG+RAKPLE H
Sbjct: 1   MGNSLGWKKTAKVMKISGETFKFKTPVKAGEVVKDYPGHVLLESEAVKHYGIRAKPLEAH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q+L  KRLYFLV+LPK P +  PRR+RS I+MSAKDRLESLML+RRS SDL+IMKP S+ 
Sbjct: 61  QDLVPKRLYFLVELPKTPTEKVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPASIE 120

Query: 121 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASK 180
           AEE      + +G  R+K+RLP+AEVEKL++ESKD+ EAA KIV    L M  T +SA  
Sbjct: 121 AEE------AKSGAMRVKMRLPKAEVEKLMQESKDETEAAAKIV---DLCMANTAESALL 180

Query: 181 SAPKQEKEDG---------IKPREK 197
                 K  G         IK REK
Sbjct: 181 QQQVHWKSAGHGRVSSQGIIKAREK 196

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BLAST of CmoCh04G000480 vs. TrEMBL
Match: B9SJ38_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0842320 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 112/170 (65.88%), Postives = 133/170 (78.24%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ GG+KTVKVMK+TGET KL TPV+AG+VV+DYPG VLL+SEAVKHYG RAKPLE H
Sbjct: 1   MGNSLGGRKTVKVMKITGETFKLKTPVKAGEVVRDYPGHVLLESEAVKHYGTRAKPLEQH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMK----P 120
           Q+L  KRLYFLV+LPK P +  PRR+RS I MSAKDRLE+LMLARRS SDLTIMK     
Sbjct: 61  QDLVAKRLYFLVELPKPPTEKVPRRVRSGIQMSAKDRLENLMLARRSVSDLTIMKNSACS 120

Query: 121 KSVLAEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGL 167
            S +A +   E  S    TR+K+RLP++EVEKL+KESKD  E A K++ L
Sbjct: 121 SSGIAPDQENETDSNGSITRVKMRLPKSEVEKLMKESKDDAEVAAKLMDL 170

[Close]

BLAST of CmoCh04G000480 vs. TrEMBL
Match: D7T8U4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04780 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 111/166 (66.87%), Postives = 136/166 (81.93%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ GGKK  KVMK+ GE +KL TPV AG+VVKDYPG VLL+SEAVKH+G+RAKPLE  
Sbjct: 1   MGNSLGGKKIAKVMKIDGEVIKLKTPVYAGEVVKDYPGHVLLESEAVKHFGIRAKPLESQ 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q L  KRLYFLV+LPK   +  PRR+RS I+MSAKDRLESLML+RRS SDLTIMKP S++
Sbjct: 61  QELKPKRLYFLVELPKGAEEKVPRRVRSGINMSAKDRLESLMLSRRSVSDLTIMKPASIV 120

Query: 121 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGL 167
            +E   + +S +GT R+K+RLP+AEVEKL++ESKD+ EAAEKI+ L
Sbjct: 121 HQEP--KEASESGTVRMKMRLPKAEVEKLMRESKDEAEAAEKIMDL 164

[Close]

BLAST of CmoCh04G000480 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 104/187 (55.61%), Postives = 133/187 (71.12%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ GGKKT KVMK+ GET KL TPV A +V+KD+PG VLLDSE+VKHYG RAKPLE  
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q L  KRLYF+V+  K   + PPRR+RS IH+SAK+RLESLMLARRS+SDL+I+KP    
Sbjct: 61  QRLEAKRLYFVVEPVK---ECPPRRVRSGIHVSAKERLESLMLARRSSSDLSILKPPGGW 120

Query: 121 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASK 180
             E+  EG+      R+KVR+P+AE+EKL+KE   + EA +KI     L+M K  Q  + 
Sbjct: 121 TTEEE-EGA----VRRVKVRIPKAELEKLVKEGATEAEATQKIA---ALFMAKQRQEEAY 176

Query: 181 SAPKQEK 188
              +Q++
Sbjct: 181 QNTRQDE 176

[Close]

BLAST of CmoCh04G000480 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 171.8 bits (434), Expect = 4.3e-43
Identity = 94/200 (47.00%), Postives = 135/200 (67.50%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ G KKT  +M + GE+ KL TPV+AG VVKD+PG VLL+SEAVK  G+RAKPLEPH
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           QNL  KR+YF+V+LP+   +  PRR+RS I MSAK+RLE+L L+RRS+SDL++MK K+ +
Sbjct: 61  QNLESKRIYFMVELPRTWKERTPRRVRSGIQMSAKERLENLKLSRRSSSDLSVMKKKTEV 120

Query: 121 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYM--------D 180
            +E+    S       +K++LP+ ++EKL KES+   + + KI  L  L++         
Sbjct: 121 NDEEREVSS-------VKLKLPKWKIEKLRKESESGSDFSNKITQLCLLHIPSGLIHQRQ 180

Query: 181 KTTQSASKSAPKQEKEDGIK 193
              ++  ++   +EKE+G K
Sbjct: 181 HLLRNGGRNFGIEEKEEGAK 193

[Close]

BLAST of CmoCh04G000480 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = 1


Query: 1   MGNAFGGK-KTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEP 60
           MGN+   K K  KVMK+ GET ++ TPV A +V  DYPG+VLLDS+AVKH+GVR+KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  HQNLSRKRLYFLVDLPKLP---------NQPPPRRIRSAIHMSAKDRLESLMLARRSASD 120
           +Q L  K+ YFLV+LPKLP         N+ P RR+ S IH+ AK+RL+ LML+RR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 LTIMKPKSVLAEEDAGEG---SSGAGTTRLKVRLPRAEVEKLLKESKDKGEA-AEKIVGL 168
           +TI          D G+G     G G T +++RLPR+++ KL++E+ +   A AEKI+G+
Sbjct: 121 VTI-------GRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGI 174

[Close]

BLAST of CmoCh04G000480 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34
Identity = 85/171 (49.71%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MGNAFGGKKT-VKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEP 60
           MGN    ++  VKVMK+ G+  +L TPV A D  K+YPGFVLLDSE VK  GVRAKPLEP
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 61  HQNLSRKRLYFLVDLPKLP--NQPPPRRIRSA-IHMSAKDRLESLMLARRSASDLTIMKP 120
           +Q L     YFLVDLP +   N+ P RR+ S  IH+ AK+RLE LML+RR+ SD+   + 
Sbjct: 61  NQILKPNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARS 120

Query: 121 KSVLAEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLY 168
             V      G+G    G TR+++RLPR+++ KL++ES D  E A KI+  Y
Sbjct: 121 DVV------GDGPE-LGHTRVRLRLPRSQITKLMEESHDASEVAAKIISAY 164

[Close]

BLAST of CmoCh04G000480 vs. NCBI nr
Match: gi|659109562|ref|XP_008454771.1| (PREDICTED: uncharacterized protein At1g66480 isoform X1 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 5.0e-70
Identity = 149/198 (75.25%), Postives = 168/198 (84.85%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN FG KKTVKVMK++GET+KLNTPVQ GDVVKDYPGFVLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q LS KRLYFLVDLPKLP +  PRR+RSAI+MSAKDRLESLMLARRSASDLTIMKPKSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 121 AEEDAGEG-SSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSAS 180
            EE  GE   SG+G TR+KVRLP+AEVE+LLKE KD+ EAAE+I+GLY     KT +S  
Sbjct: 121 TEEGGGESEGSGSGATRVKVRLPKAEVERLLKECKDEAEAAERIMGLY-----KTRESVC 180

Query: 181 KSAPKQ-EKEDGIKPREK 197
           ++  K+ EK+D IKPREK
Sbjct: 181 ENDHKEKEKKDIIKPREK 193

[Close]

BLAST of CmoCh04G000480 vs. NCBI nr
Match: gi|659109564|ref|XP_008454773.1| (PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 5.0e-70
Identity = 149/198 (75.25%), Postives = 168/198 (84.85%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN FG KKTVKVMK++GET+KLNTPVQ GDVVKDYPGFVLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q LS KRLYFLVDLPKLP +  PRR+RSAI+MSAKDRLESLMLARRSASDLTIMKPKSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 121 AEEDAGEG-SSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSAS 180
            EE  GE   SG+G TR+KVRLP+AEVE+LLKE KD+ EAAE+I+GLY     KT +S  
Sbjct: 121 TEEGGGESEGSGSGATRVKVRLPKAEVERLLKECKDEAEAAERIMGLY-----KTRESVC 180

Query: 181 KSAPKQ-EKEDGIKPREK 197
           ++  K+ EK+D IKPREK
Sbjct: 181 ENDHKEKEKKDIIKPREK 193

[Close]

BLAST of CmoCh04G000480 vs. NCBI nr
Match: gi|449445353|ref|XP_004140437.1| (PREDICTED: uncharacterized protein At1g66480 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 4.0e-67
Identity = 145/201 (72.14%), Postives = 167/201 (83.08%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN FG KKTVKVMK++GETMKL TPVQAGDVVKDYPGFVLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGVKKTVKVMKISGETMKLKTPVQAGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q LS KRLYFLVDLP+LP +  PRR+RSAI+MSAKDRLESLMLARRSASDLTIMKPKS+L
Sbjct: 61  QKLSTKRLYFLVDLPRLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSML 120

Query: 121 AEEDAG---EGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQS 180
            EE  G   EGS     TR+K+RLP+AEVE+LLKE KD+ EAAE+I+GLY     KT ++
Sbjct: 121 TEEGGGESEEGSVSGAPTRVKMRLPKAEVERLLKECKDEAEAAERIMGLY-----KTREN 180

Query: 181 ASKSAPKQE--KEDGIKPREK 197
           A ++  K++  K+D IKPREK
Sbjct: 181 AYENDHKEKEIKKDIIKPREK 196

[Close]

BLAST of CmoCh04G000480 vs. NCBI nr
Match: gi|590696217|ref|XP_007045105.1| (Encodes a protein whose expression is responsive to nematode infection, putative [Theobroma cacao])

HSP 1 Score: 216.9 bits (551), Expect = 3.3e-53
Identity = 111/166 (66.87%), Postives = 137/166 (82.53%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ GGKKT KVMK+ GET KL TPV+A +VVKDYPG VLL+SE+VKH+G+RAKPL+ H
Sbjct: 1   MGNSLGGKKTTKVMKINGETFKLKTPVKAEEVVKDYPGHVLLESESVKHFGIRAKPLQSH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q+L  KRLYFLV+LP+ P +   RR+RS I+MSAKDRLESLML+RRS SDLT+MKPK V+
Sbjct: 61  QSLEPKRLYFLVELPEAPKEIVTRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPKCVI 120

Query: 121 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGL 167
            EE   EGS  +G  R+K+RLPRAEVE+L+KES ++ EAAEKI+ L
Sbjct: 121 PEESEEEGSE-SGAMRVKMRLPRAEVERLMKESNNEAEAAEKIMQL 165

[Close]

BLAST of CmoCh04G000480 vs. NCBI nr
Match: gi|1009107967|ref|XP_015882404.1| (PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba])

HSP 1 Score: 216.5 bits (550), Expect = 4.3e-53
Identity = 113/191 (59.16%), Postives = 144/191 (75.39%), Query Frame = 1


Query: 1   MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 60
           MGN+ GGKKT KVMK+ GET KL TP+QA +VVKDYPG VLL+SE+VKH+G RAKPLEPH
Sbjct: 1   MGNSLGGKKTTKVMKINGETFKLKTPIQANEVVKDYPGHVLLESESVKHFGTRAKPLEPH 60

Query: 61  QNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 120
           Q L  KRLYFLV+LPK+  +  PRR+RS I+MSAKDRLE+LMLARRS SDL+IMKP  + 
Sbjct: 61  QELQPKRLYFLVELPKVQKEQVPRRVRSGINMSAKDRLENLMLARRSVSDLSIMKPTYIS 120

Query: 121 AEEDAGEG--SSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSA 180
            +E   +G  S   G  R+++RLP+AEVEKL+KESK++ EAAEKI+ +Y +  +      
Sbjct: 121 QDEMMTKGGVSENGGGVRVRMRLPKAEVEKLMKESKNEEEAAEKIMEIYLMNNNGNGNGG 180

Query: 181 SKSAPKQEKED 190
            + A K + +D
Sbjct: 181 KQIAEKVDDDD 191

The following BLAST results are available for this feature:

BLAST of CmoCh04G000480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	2.3e-38	49.72	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of CmoCh04G000480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E984_THECC	2.3e-53	66.87	Encodes a protein whose expression is responsive to nematode infection, putative...	[more]
B9HJA1_POPTR	6.6e-53	66.27	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1	[more]
B9HW76_POPTR	8.7e-53	60.49	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12400g PE=4 SV=1	[more]
B9SJ38_RICCO	1.1e-52	65.88	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0842320 PE=4 SV=1	[more]
D7T8U4_VITVI	1.1e-52	66.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04780 PE=4 SV=...	[more]

BLAST of CmoCh04G000480 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01340.1	1.4e-46	55.61	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT1G71015.1	4.3e-43	47.00	unknown protein	[more]
AT1G66480.1	1.3e-39	49.72	plastid movement impaired 2	[more]
AT5G37840.1	1.6e-34	49.71	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]

BLAST of CmoCh04G000480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109562\|ref\|XP_008454771.1\|	5.0e-70	75.25	PREDICTED: uncharacterized protein At1g66480 isoform X1 [Cucumis melo]	[more]
gi\|659109564\|ref\|XP_008454773.1\|	5.0e-70	75.25	PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo]	[more]
gi\|449445353\|ref\|XP_004140437.1\|	4.0e-67	72.14	PREDICTED: uncharacterized protein At1g66480 [Cucumis sativus]	[more]
gi\|590696217\|ref\|XP_007045105.1\|	3.3e-53	66.87	Encodes a protein whose expression is responsive to nematode infection, putative...	[more]
gi\|1009107967\|ref\|XP_015882404.1\|	4.3e-53	59.16	PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G000480.1	CmoCh04G000480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..148 score: 1.1
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 2..167 score: 2.9
None	No IPR available	PANTHER	PTHR33148:SF3	SUBFAMILY NOT NAMED	coord: 2..167 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G000480	CmaCh04G009980	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G000480	CmaCh04G000550	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G000480	CsaUNG017640	Cucumber (Chinese Long) v2	cmocuB698
CmoCh04G000480	MELO3C018330	Melon (DHL92) v3.5.1	cmomeB653
CmoCh04G000480	ClCG07G006320	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G000480	CSPI04G27800	Wild cucumber (PI 183967)	cmocpiB713
CmoCh04G000480	Lsi04G011420	Bottle gourd (USVL1VR-Ls)	cmolsiB673
CmoCh04G000480	Cp4.1LG01g07570	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G000480	Cp4.1LG01g06210	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G000480	MELO3C034251.2	Melon (DHL92) v3.6.1	cmomedB743
CmoCh04G000480	CsaV3_5G013600	Cucumber (Chinese Long) v3	cmocucB0862
CmoCh04G000480	Cla97C07G134240	Watermelon (97103) v2	cmowmbB755
CmoCh04G000480	Bhi07G000280	Wax gourd	cmowgoB0889
CmoCh04G000480	CsGy5G010230	Cucumber (Gy14) v2	cgybcmoB660
CmoCh04G000480	Carg00112	Silver-seed gourd	carcmoB0924
CmoCh04G000480	Carg22002	Silver-seed gourd	carcmoB0250

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G000480	CmoCh04G010760	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G000480	Cucumber (Chinese Long) v3	cmocucB0890
CmoCh04G000480	Watermelon (97103) v2	cmowmbB679
CmoCh04G000480	Wax gourd	cmowgoB0826
CmoCh04G000480	Cucurbita moschata (Rifu)	cmocmoB471
CmoCh04G000480	Watermelon (Charleston Gray)	cmowcgB638
CmoCh04G000480	Cucurbita maxima (Rimu)	cmacmoB746
CmoCh04G000480	Wild cucumber (PI 183967)	cmocpiB760
CmoCh04G000480	Cucumber (Chinese Long) v2	cmocuB756
CmoCh04G000480	Melon (DHL92) v3.5.1	cmomeB629
CmoCh04G000480	Melon (DHL92) v3.5.1	cmomeB636
CmoCh04G000480	Watermelon (97103) v1	cmowmB691
CmoCh04G000480	Watermelon (97103) v1	cmowmB708
CmoCh04G000480	Melon (DHL92) v3.6.1	cmomedB724