CmaCh04G000550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G000550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Plastid movement impaired protein
Location	Cma_Chr04 : 266131 .. 268691 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGAGCCAAACGCGTCTAATAAAATGAAGCGCAATGCGTCTATATTATAGCAAAAGTAGCATTTGTTTAATGAAGCGCGTCTAATAAAATGAGAACATAAGCATAGCTCGAGCAGTAGAAAATATATATTCCCGATCAATTCGAGATGTGTAAGATTCAAACCTCTCATCCCATGTATGATTATAATATATTTGTTGGAAGGGAAGTCATGTAGGGTTGGCTTCTTTGTTTGACCAAAAAAAGGAAGCCACTTCTCAAGCCATCAAACAAAGTGTTGTATATTATAAGATGTAGTTGAATGATTGTGTGTTATACGCCACACCCACCGCCTATCTTCGCTCATTCCCTTTTGGGCGCCATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCTCCGGGGAAACCATGAAGCTAAGCACCCCGGTTCAAGCCGGAGATGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCTGTGAAGCACTACGGTGTCCGCGCAAAGCCATTGGAACCCCACCAAAGCCTCAGCAGGAAGCGCCTCTATTTTCTCGTGGACCTGCCTAAGCTTCCAAACCAACCGGTAATCAAATTACAAACTTCACTTGTATCATTTATAGTATTTAACCCTTTTATTCATATTCTTAATACAGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAACCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACCACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCGCCAAAAGAGGAGGAGGATGGCATCAAGCCACGTGAGGTGCGTATGCCTTTTACTTTTTATCTTTTATTTTATTATTATTATTGCATTTTACTTTAATTAAATTTATAATTCACTTTTATTTCACAATAAATCTTTTTTTTTTGTTTTTAATTTATAGATTTCATCTTATAGCCTTGAAAAAGCGTTCCAAAATTAAAAATTAAAAAATAAAATAAAATTAATTAAATGAAAAAGATGTAAATTTAAATGGATGACCCCAAGTTGACCCACTCACTATCCAATGAGTCAATATTTTAATTTATTATTATTATTTTATTTGTTTTTGCCAAAACCACATCAACTTCTTGTTACAAATATCCATAGAATATTATACCTTCAAATTTGTTTCTTTTTAGAAAATATCTTGGCGAGTTCCTAAATTATATTTAAATTGACTATTTTTAATGGTTATTAATTTTCAAAATAATAAAAGATATAGTTATTTAAAGTTATTTATCTTTTAGATAATCTCCATAGTAATATCATTTATAGTATTTAATAAAATTAGGTTGCCAAGTTGAGTTCACTATCAGATTAGTCCCTTTTTATTTGGTTATTTGGTTATTGGGTTATTTGGTTATTTGGTTAGTGCTTCCTGTTCTAACCCATTAATTAGTGTAACTTATCTTTTCAGACTTTTCCATCCTATAATTAGTGGAGTTTGAATTTTCATCTAATTTTATTTTTCAAAATTAATAAAGTAGTCACCAACAATAATATCTTTTACAATTTGAAATTATTTAATGAAAAATAAATAAATCTAAAAATAATTATCAACTATTCTCATTTAATTAGTGTTTCTGTCTTCAAAATCCATTAATGCCAATCTTTTTCTTAGCCTAACCATCGTTGTTTTACATAATTATTTTTTCTACAAAATATCTACCAAAATGGATCTAAATTTATAAGTTAACTTATTTTTTCAATAGTTAAAAAAAAAAAAAAAATAGTTAGATATCAATCAAATTCATTAAATAGATAGTGCGGGGCCATTAATTGCTCAACTTTTTCTACAATTTTCTTCCATCGTATAATAGACGCAACCTTTTCTTTCCCCTAATTATTAATATAGTTTTGTAAAATCCAAAACTATCATTAATGAAATTTGATATCATTTATTACTTTATTTCTTCATTCTCTTCCCTCTCTTACTATTTATGACACGGAATTTTTCTAATATTTTTAAATCATAAAAAAATATATACAATTTTTTGTATTATACAACTTTTTTTTTAAAAGAACAAGTTGGAATTGCAGAAGCGTCGTGTAAGTTTCATGACGACAATGGAAGCAGGGACTGAAATTGCAGTGGCATCTTAATTATCGAGAAGAACAAGATTCATGAAAGTGCTACGTTATGGGACTTTTACTTCAATTTAGAACCTTTGAATCTTGTACAAGCTTGCTTTTGTAGAATATAGATAGATTTCCAGTTCCTTTAACAACCCACTATGTATTTATTAGTTAACTTCATCATACATATGCAGCTATCTATGTTGTGCACGATAATCATTTTTGGCTGAATCTATGGTTTAATGTTCCTCCGTATTTTCAC

mRNA sequence

CAGAGAGCCAAACGCGTCTAATAAAATGAAGCGCAATGCGTCTATATTATAGCAAAAGTAGCATTTGTTTAATGAAGCGCGTCTAATAAAATGAGAACATAAGCATAGCTCGAGCAGTAGAAAATATATATTCCCGATCAATTCGAGATGTGTAAGATTCAAACCTCTCATCCCATGTATGATTATAATATATTTGTTGGAAGGGAAGTCATGTAGGGTTGGCTTCTTTGTTTGACCAAAAAAAGGAAGCCACTTCTCAAGCCATCAAACAAAGTGTTGTATATTATAAGATGTAGTTGAATGATTGTGTGTTATACGCCACACCCACCGCCTATCTTCGCTCATTCCCTTTTGGGCGCCATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCTCCGGGGAAACCATGAAGCTAAGCACCCCGGTTCAAGCCGGAGATGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCTGTGAAGCACTACGGTGTCCGCGCAAAGCCATTGGAACCCCACCAAAGCCTCAGCAGGAAGCGCCTCTATTTTCTCGTGGACCTGCCTAAGCTTCCAAACCAACCGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAACCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACCACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCGCCAAAAGAGGAGGAGGATGGCATCAAGCCACGTGAGAAGCGTCGTGTAAGTTTCATGACGACAATGGAAGCAGGGACTGAAATTGCAGTGGCATCTTAATTATCGAGAAGAACAAGATTCATGAAAGTGCTACGTTATGGGACTTTTACTTCAATTTAGAACCTTTGAATCTTGTACAAGCTTGCTTTTGTAGAATATAGATAGATTTCCAGTTCCTTTAACAACCCACTATGTATTTATTAGTTAACTTCATCATACATATGCAGCTATCTATGTTGTGCACGATAATCATTTTTGGCTGAATCTATGGTTTAATGTTCCTCCGTATTTTCAC

Coding sequence (CDS)

ATGATTGTGTGTTATACGCCACACCCACCGCCTATCTTCGCTCATTCCCTTTTGGGCGCCATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCTCCGGGGAAACCATGAAGCTAAGCACCCCGGTTCAAGCCGGAGATGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCTGTGAAGCACTACGGTGTCCGCGCAAAGCCATTGGAACCCCACCAAAGCCTCAGCAGGAAGCGCCTCTATTTTCTCGTGGACCTGCCTAAGCTTCCAAACCAACCGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAACCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACCACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCGCCAAAAGAGGAGGAGGATGGCATCAAGCCACGTGAGAAGCGTCGTGTAAGTTTCATGACGACAATGGAAGCAGGGACTGAAATTGCAGTGGCATCTTAA

Protein sequence

MIVCYTPHPPPIFAHSLLGAMGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPHQSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVLAEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASPKEEEDGIKPREKRRVSFMTTMEAGTEIAVAS

Homology

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BLAST of CmaCh04G000550 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-39
Identity = 105/231 (45.45%), Postives = 146/231 (63.20%), Query Frame = 1


Query: 21  MGNAFGGK-KTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEP 80
           MGN+   K K  KVMK+ GET ++ TPV A +V  DYPG+VLLDS+AVKH+GVR+KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 81  HQSLSRKRLYFLVDLPKLP---------NQPPPRRIRSAIHMSAKDRLESLMLARRSASD 140
           +Q+L  K+ YFLV+LPKLP         N+ P RR+ S IH+ AK+RL+ LML+RR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 141 LTIMKPKSVLAEEDAGEG---SSGAGTTRLKVRLPRAEVEKLLKESKDKGEA-AEKIVGL 200
           +TI          D G+G     G G T +++RLPR+++ KL++E+ +   A AEKI+  
Sbjct: 121 VTI-------GRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKIL-- 180

Query: 201 YGLYMDKTTQSASPKEEEDG--------IKPREKRRVSFMTTMEAGTEIAV 230
            G+YM+++ +    +   DG        IK REK +VSF    E G E+ V
Sbjct: 181 -GIYMERSGELGGGRGGVDGRRELGSGEIKAREK-QVSF--AGEGGRELPV 218

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BLAST of CmaCh04G000550 vs. TrEMBL
Match: B9HW76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12400g PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.0e-57
Identity = 131/223 (58.74%), Postives = 160/223 (71.75%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN+ G KKT KVMK+SGET K  TPV+AG+VVKDYPG VLL+SEAVKHYG+RAKPLE H
Sbjct: 1   MGNSLGWKKTAKVMKISGETFKFKTPVKAGEVVKDYPGHVLLESEAVKHYGIRAKPLEAH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q L  KRLYFLV+LPK P +  PRR+RS I+MSAKDRLESLML+RRS SDL+IMKP S+ 
Sbjct: 61  QDLVPKRLYFLVELPKTPTEKVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPASIE 120

Query: 141 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASP 200
           AEE      + +G  R+K+RLP+AEVEKL++ESKD+ EAA KIV    L M  T +SA  
Sbjct: 121 AEE------AKSGAMRVKMRLPKAEVEKLMQESKDETEAAAKIV---DLCMANTAESALL 180

Query: 201 KEE------------EDGIKPREKRRVSFMTTMEAGTEIAVAS 232
           +++              GI    ++RVSF+   E  T+IAVAS
Sbjct: 181 QQQVHWKSAGHGRVSSQGIIKAREKRVSFLPVNEGETQIAVAS 214

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BLAST of CmaCh04G000550 vs. TrEMBL
Match: A0A0D2PTY5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162500 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 126/224 (56.25%), Postives = 164/224 (73.21%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN+ GGKK  KVMK++GETMKL TPV+A  VVKDYPG VLL+SEAVKH+G+RAKPL+ H
Sbjct: 1   MGNSLGGKKMTKVMKINGETMKLKTPVRAEQVVKDYPGHVLLESEAVKHFGIRAKPLQSH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q+L  KRLYFLV+LP+ P +  PRR+RS I+MSAKDRLESLML+RRS SDLT+MKP   +
Sbjct: 61  QNLEPKRLYFLVELPEAPKERVPRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPIIAI 120

Query: 141 AEEDAGE--GSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSA 200
            EE+  E  G S +G  R+K+RLP+++VE+L+KES ++ EAAEKI+ L       ++++ 
Sbjct: 121 PEEENEEEGGGSESGAMRVKMRLPKSQVERLIKESLNEREAAEKIMQLCVANTGNSSRAE 180

Query: 201 SPKEEE-----------DGIKPREKRRVSFMTTMEAGTEIAVAS 232
           + K+ +           DG K REK RVSFM   E G++IAV S
Sbjct: 181 ADKQPQLHWKASHGSIGDGFKAREK-RVSFMAMNEGGSQIAVTS 223

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BLAST of CmaCh04G000550 vs. TrEMBL
Match: A0A061E984_THECC (Encodes a protein whose expression is responsive to nematode infection, putative OS=Theobroma cacao GN=TCM_047008 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.3e-55
Identity = 128/229 (55.90%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN+ GGKKT KVMK++GET KL TPV+A +VVKDYPG VLL+SE+VKH+G+RAKPL+ H
Sbjct: 1   MGNSLGGKKTTKVMKINGETFKLKTPVKAEEVVKDYPGHVLLESESVKHFGIRAKPLQSH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           QSL  KRLYFLV+LP+ P +   RR+RS I+MSAKDRLESLML+RRS SDLT+MKPK V+
Sbjct: 61  QSLEPKRLYFLVELPEAPKEIVTRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPKCVI 120

Query: 141 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASP 200
            EE   EGS  +G  R+K+RLPRAEVE+L+KES ++ EAAEKI+ L       + + A+ 
Sbjct: 121 PEESEEEGSE-SGAMRVKMRLPRAEVERLMKESNNEAEAAEKIMQLCVANTRNSPREAAQ 180

Query: 201 K------------------EEEDGIKPREKRRVSFMTTMEAGTEIAVAS 232
           K                     +  K REK RVSF    E G++IAV S
Sbjct: 181 KGNGRLSLQQQVHWKGSHGRVGERFKAREK-RVSFTPISEGGSQIAVTS 227

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BLAST of CmaCh04G000550 vs. TrEMBL
Match: A0A0B2RG88_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039276 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-55
Identity = 124/218 (56.88%), Postives = 153/218 (70.18%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN FG KKT KVMK+ GET KL TPV+ G+V+KD+PG VLLDSEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGAKKTTKVMKIDGETFKLKTPVKVGEVLKDHPGLVLLDSEAVKHYGVRAKPLEAH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           + L  KRLYFLV+LPK   +  PRR+RS I+MSAKDRLESL+L RRSASDL+IMK  S  
Sbjct: 61  KDLQPKRLYFLVELPK---ETTPRRVRSGINMSAKDRLESLVLTRRSASDLSIMKQSS-- 120

Query: 141 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASP 200
              D  E S+  G  RLK+RLP+AEVEKL++  KD+ EAAE+I+ LY     +  +  + 
Sbjct: 121 -NTDNKENSNNGGGVRLKMRLPKAEVEKLIQGCKDEAEAAERIMNLYKANGSRENEGGTK 180

Query: 201 KE-------EEDGIKPREKRRVSFMTTMEAGTEIAVAS 232
           +        ++  +K   K+RVSFM   E G E+AVAS
Sbjct: 181 ENGEKMVVLDQQSVKESTKKRVSFMPINEGGIEVAVAS 212

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BLAST of CmaCh04G000550 vs. TrEMBL
Match: I1ND67_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G013400 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-55
Identity = 124/218 (56.88%), Postives = 153/218 (70.18%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN FG KKT KVMK+ GET KL TPV+ G+V+KD+PG VLLDSEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGAKKTTKVMKIDGETFKLKTPVKVGEVLKDHPGLVLLDSEAVKHYGVRAKPLEAH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           + L  KRLYFLV+LPK   +  PRR+RS I+MSAKDRLESL+L RRSASDL+IMK  S  
Sbjct: 61  KDLQPKRLYFLVELPK---ETTPRRVRSGINMSAKDRLESLVLTRRSASDLSIMKQSS-- 120

Query: 141 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASP 200
              D  E S+  G  RLK+RLP+AEVEKL++  KD+ EAAE+I+ LY     +  +  + 
Sbjct: 121 -NTDNKENSNNGGGVRLKMRLPKAEVEKLIQGCKDEAEAAERIMNLYKANGSRENEGGTK 180

Query: 201 KE-------EEDGIKPREKRRVSFMTTMEAGTEIAVAS 232
           +        ++  +K   K+RVSFM   E G E+AVAS
Sbjct: 181 ENGEKMVVLDQQSVKESTKKRVSFMPINEGGIEVAVAS 212

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BLAST of CmaCh04G000550 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-49
Identity = 115/224 (51.34%), Postives = 147/224 (65.62%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN+ GGKKT KVMK+ GET KL TPV A +V+KD+PG VLLDSE+VKHYG RAKPLE  
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q L  KRLYF+V+  K   + PPRR+RS IH+SAK+RLESLMLARRS+SDL+I+KP    
Sbjct: 61  QRLEAKRLYFVVEPVK---ECPPRRVRSGIHVSAKERLESLMLARRSSSDLSILKPPGGW 120

Query: 141 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASP 200
             E+  EG+      R+KVR+P+AE+EKL+KE   + EA +KI  L+     +     + 
Sbjct: 121 TTEEE-EGA----VRRVKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQRQEEAYQNT 180

Query: 201 KEEED--------------GIKPREKRRVSFMTTMEAGTEIAVA 231
           +++E               G+K R K RVSFM     G+EI VA
Sbjct: 181 RQDEPATTATATATTTATRGVKSRLK-RVSFMAERGGGSEITVA 215

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BLAST of CmaCh04G000550 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 171.4 bits (433), Expect = 6.5e-43
Identity = 88/171 (51.46%), Postives = 125/171 (73.10%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN+ G KKT  +M ++GE+ KL TPV+AG VVKD+PG VLL+SEAVK  G+RAKPLEPH
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q+L  KR+YF+V+LP+   +  PRR+RS I MSAK+RLE+L L+RRS+SDL++MK K+ +
Sbjct: 61  QNLESKRIYFMVELPRTWKERTPRRVRSGIQMSAKERLENLKLSRRSSSDLSVMKKKTEV 120

Query: 141 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYM 192
            +E+    S       +K++LP+ ++EKL KES+   + + KI  L  L++
Sbjct: 121 NDEEREVSS-------VKLKLPKWKIEKLRKESESGSDFSNKITQLCLLHI 164

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BLAST of CmaCh04G000550 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-40
Identity = 105/231 (45.45%), Postives = 146/231 (63.20%), Query Frame = 1


Query: 21  MGNAFGGK-KTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEP 80
           MGN+   K K  KVMK+ GET ++ TPV A +V  DYPG+VLLDS+AVKH+GVR+KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 81  HQSLSRKRLYFLVDLPKLP---------NQPPPRRIRSAIHMSAKDRLESLMLARRSASD 140
           +Q+L  K+ YFLV+LPKLP         N+ P RR+ S IH+ AK+RL+ LML+RR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 141 LTIMKPKSVLAEEDAGEG---SSGAGTTRLKVRLPRAEVEKLLKESKDKGEA-AEKIVGL 200
           +TI          D G+G     G G T +++RLPR+++ KL++E+ +   A AEKI+  
Sbjct: 121 VTI-------GRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKIL-- 180

Query: 201 YGLYMDKTTQSASPKEEEDG--------IKPREKRRVSFMTTMEAGTEIAV 230
            G+YM+++ +    +   DG        IK REK +VSF    E G E+ V
Sbjct: 181 -GIYMERSGELGGGRGGVDGRRELGSGEIKAREK-QVSF--AGEGGRELPV 218

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BLAST of CmaCh04G000550 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-34
Identity = 96/210 (45.71%), Postives = 123/210 (58.57%), Query Frame = 1


Query: 21  MGNAFGGKKT-VKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEP 80
           MGN    ++  VKVMK+ G+  +L TPV A D  K+YPGFVLLDSE VK  GVRAKPLEP
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 81  HQSLSRKRLYFLVDLPKLP--NQPPPRRIRSA-IHMSAKDRLESLMLARRSASDLTIMKP 140
           +Q L     YFLVDLP +   N+ P RR+ S  IH+ AK+RLE LML+RR+ SD+   + 
Sbjct: 61  NQILKPNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARS 120

Query: 141 KSVLAEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLY--------- 200
             V      G+G    G TR+++RLPR+++ KL++ES D  E A KI+  Y         
Sbjct: 121 DVV------GDGPE-LGHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYMESSGGIQG 180

Query: 201 GLYMDKTTQSASPKEEEDGIKPREKRRVSF 218
           G   D   Q     E  +  K REK  VSF
Sbjct: 181 GRDNDGLRQRLGIAEINNHYKAREK-HVSF 202

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BLAST of CmaCh04G000550 vs. NCBI nr
Match: gi|659109564|ref|XP_008454773.1| (PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 6.3e-80
Identity = 163/212 (76.89%), Postives = 180/212 (84.91%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN FG KKTVKVMK+SGET+KL+TPVQ GDVVKDYPGFVLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q LS KRLYFLVDLPKLP +  PRR+RSAI+MSAKDRLESLMLARRSASDLTIMKPKSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 141 AEEDAGEG-SSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSAS 200
            EE  GE   SG+G TR+KVRLP+AEVE+LLKE KD+ EAAE+I+GLY            
Sbjct: 121 TEEGGGESEGSGSGATRVKVRLPKAEVERLLKECKDEAEAAERIMGLYKTRESVCENDHK 180

Query: 201 PKEEEDGIKPREKRRVSFMTTMEAGTEIAVAS 232
            KE++D IKPREKRRVSFMTTMEAGT+IAVAS
Sbjct: 181 EKEKKDIIKPREKRRVSFMTTMEAGTQIAVAS 212

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BLAST of CmaCh04G000550 vs. NCBI nr
Match: gi|659109562|ref|XP_008454771.1| (PREDICTED: uncharacterized protein At1g66480 isoform X1 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.5e-78
Identity = 163/213 (76.53%), Postives = 180/213 (84.51%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN FG KKTVKVMK+SGET+KL+TPVQ GDVVKDYPGFVLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q LS KRLYFLVDLPKLP +  PRR+RSAI+MSAKDRLESLMLARRSASDLTIMKPKSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 141 AEEDAGEG-SSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSAS 200
            EE  GE   SG+G TR+KVRLP+AEVE+LLKE KD+ EAAE+I+GLY            
Sbjct: 121 TEEGGGESEGSGSGATRVKVRLPKAEVERLLKECKDEAEAAERIMGLYKTRESVCENDHK 180

Query: 201 PKEEEDGIKPRE-KRRVSFMTTMEAGTEIAVAS 232
            KE++D IKPRE KRRVSFMTTMEAGT+IAVAS
Sbjct: 181 EKEKKDIIKPREKKRRVSFMTTMEAGTQIAVAS 213

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BLAST of CmaCh04G000550 vs. NCBI nr
Match: gi|449445353|ref|XP_004140437.1| (PREDICTED: uncharacterized protein At1g66480 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.9e-76
Identity = 160/215 (74.42%), Postives = 178/215 (82.79%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN FG KKTVKVMK+SGETMKL TPVQAGDVVKDYPGFVLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGVKKTVKVMKISGETMKLKTPVQAGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q LS KRLYFLVDLP+LP +  PRR+RSAI+MSAKDRLESLMLARRSASDLTIMKPKS+L
Sbjct: 61  QKLSTKRLYFLVDLPRLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSML 120

Query: 141 AEEDAG---EGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQS 200
            EE  G   EGS     TR+K+RLP+AEVE+LLKE KD+ EAAE+I+GLY    +     
Sbjct: 121 TEEGGGESEEGSVSGAPTRVKMRLPKAEVERLLKECKDEAEAAERIMGLYKTRENAYEND 180

Query: 201 ASPKE-EEDGIKPREKRRVSFMTTMEAGTEIAVAS 232
              KE ++D IKPREKRRVSFMTTME GT+IAVAS
Sbjct: 181 HKEKEIKKDIIKPREKRRVSFMTTMEGGTQIAVAS 215

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BLAST of CmaCh04G000550 vs. NCBI nr
Match: gi|224111518|ref|XP_002315887.1| (hypothetical protein POPTR_0010s12400g [Populus trichocarpa])

HSP 1 Score: 229.9 bits (585), Expect = 4.4e-57
Identity = 131/223 (58.74%), Postives = 160/223 (71.75%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN+ G KKT KVMK+SGET K  TPV+AG+VVKDYPG VLL+SEAVKHYG+RAKPLE H
Sbjct: 1   MGNSLGWKKTAKVMKISGETFKFKTPVKAGEVVKDYPGHVLLESEAVKHYGIRAKPLEAH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q L  KRLYFLV+LPK P +  PRR+RS I+MSAKDRLESLML+RRS SDL+IMKP S+ 
Sbjct: 61  QDLVPKRLYFLVELPKTPTEKVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPASIE 120

Query: 141 AEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASP 200
           AEE      + +G  R+K+RLP+AEVEKL++ESKD+ EAA KIV    L M  T +SA  
Sbjct: 121 AEE------AKSGAMRVKMRLPKAEVEKLMQESKDETEAAAKIV---DLCMANTAESALL 180

Query: 201 KEE------------EDGIKPREKRRVSFMTTMEAGTEIAVAS 232
           +++              GI    ++RVSF+   E  T+IAVAS
Sbjct: 181 QQQVHWKSAGHGRVSSQGIIKAREKRVSFLPVNEGETQIAVAS 214

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BLAST of CmaCh04G000550 vs. NCBI nr
Match: gi|823158430|ref|XP_012479071.1| (PREDICTED: uncharacterized protein At1g66480-like [Gossypium raimondii])

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-56
Identity = 126/224 (56.25%), Postives = 164/224 (73.21%), Query Frame = 1


Query: 21  MGNAFGGKKTVKVMKVSGETMKLSTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPH 80
           MGN+ GGKK  KVMK++GETMKL TPV+A  VVKDYPG VLL+SEAVKH+G+RAKPL+ H
Sbjct: 1   MGNSLGGKKMTKVMKINGETMKLKTPVRAEQVVKDYPGHVLLESEAVKHFGIRAKPLQSH 60

Query: 81  QSLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVL 140
           Q+L  KRLYFLV+LP+ P +  PRR+RS I+MSAKDRLESLML+RRS SDLT+MKP   +
Sbjct: 61  QNLEPKRLYFLVELPEAPKERVPRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPIIAI 120

Query: 141 AEEDAGE--GSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSA 200
            EE+  E  G S +G  R+K+RLP+++VE+L+KES ++ EAAEKI+ L       ++++ 
Sbjct: 121 PEEENEEEGGGSESGAMRVKMRLPKSQVERLIKESLNEREAAEKIMQLCVANTGNSSRAE 180

Query: 201 SPKEEE-----------DGIKPREKRRVSFMTTMEAGTEIAVAS 232
           + K+ +           DG K REK RVSFM   E G++IAV S
Sbjct: 181 ADKQPQLHWKASHGSIGDGFKAREK-RVSFMAMNEGGSQIAVTS 223

The following BLAST results are available for this feature:

BLAST of CmaCh04G000550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	2.4e-39	45.45	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of CmaCh04G000550 vs. TrEMBL


Match Name	E-value	Identity	Description
B9HW76_POPTR	3.0e-57	58.74	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12400g PE=4 SV=1	[more]
A0A0D2PTY5_GOSRA	1.2e-56	56.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162500 PE=4 SV=1	[more]
A0A061E984_THECC	1.3e-55	55.90	Encodes a protein whose expression is responsive to nematode infection, putative...	[more]
A0A0B2RG88_GLYSO	1.7e-55	56.88	Uncharacterized protein OS=Glycine soja GN=glysoja_039276 PE=4 SV=1	[more]
I1ND67_SOYBN	1.7e-55	56.88	Uncharacterized protein OS=Glycine max GN=GLYMA_20G013400 PE=4 SV=1	[more]

BLAST of CmaCh04G000550 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01340.1	2.7e-49	51.34	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT1G71015.1	6.5e-43	51.46	unknown protein	[more]
AT1G66480.1	1.4e-40	45.45	plastid movement impaired 2	[more]
AT5G37840.1	1.1e-34	45.71	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]

BLAST of CmaCh04G000550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109564\|ref\|XP_008454773.1\|	6.3e-80	76.89	PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo]	[more]
gi\|659109562\|ref\|XP_008454771.1\|	1.5e-78	76.53	PREDICTED: uncharacterized protein At1g66480 isoform X1 [Cucumis melo]	[more]
gi\|449445353\|ref\|XP_004140437.1\|	1.9e-76	74.42	PREDICTED: uncharacterized protein At1g66480 [Cucumis sativus]	[more]
gi\|224111518\|ref\|XP_002315887.1\|	4.4e-57	58.74	hypothetical protein POPTR_0010s12400g [Populus trichocarpa]	[more]
gi\|823158430\|ref\|XP_012479071.1\|	1.7e-56	56.25	PREDICTED: uncharacterized protein At1g66480-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G000550.1	CmaCh04G000550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 21..168 score: 1.3
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 22..227 score: 4.5
None	No IPR available	PANTHER	PTHR33148:SF3	SUBFAMILY NOT NAMED	coord: 22..227 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G000550	CsaUNG017640	Cucumber (Chinese Long) v2	cmacuB707
CmaCh04G000550	MELO3C018330	Melon (DHL92) v3.5.1	cmameB659
CmaCh04G000550	ClCG07G006320	Watermelon (Charleston Gray)	cmawcgB674
CmaCh04G000550	CSPI04G27800	Wild cucumber (PI 183967)	cmacpiB720
CmaCh04G000550	CmoCh04G000480	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G000550	CmoCh04G010760	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G000550	Lsi04G011420	Bottle gourd (USVL1VR-Ls)	cmalsiB680
CmaCh04G000550	Cp4.1LG01g07570	Cucurbita pepo (Zucchini)	cmacpeB722
CmaCh04G000550	Cp4.1LG01g06210	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G000550	MELO3C034251.2	Melon (DHL92) v3.6.1	cmamedB746
CmaCh04G000550	CsaV3_5G013600	Cucumber (Chinese Long) v3	cmacucB0893
CmaCh04G000550	Cla97C07G134240	Watermelon (97103) v2	cmawmbB781
CmaCh04G000550	Bhi07G000280	Wax gourd	cmawgoB0890
CmaCh04G000550	CsGy5G010230	Cucumber (Gy14) v2	cgybcmaB681
CmaCh04G000550	Carg00112	Silver-seed gourd	carcmaB0949
CmaCh04G000550	Carg22002	Silver-seed gourd	carcmaB0242

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G000550	CmaCh04G009980	Cucurbita maxima (Rimu)	cmacmaB531

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G000550	Watermelon (97103) v2	cmawmbB709
CmaCh04G000550	Wax gourd	cmawgoB0830
CmaCh04G000550	Cucurbita maxima (Rimu)	cmacmaB539
CmaCh04G000550	Melon (DHL92) v3.5.1	cmameB639
CmaCh04G000550	Melon (DHL92) v3.5.1	cmameB648
CmaCh04G000550	Watermelon (Charleston Gray)	cmawcgB636
CmaCh04G000550	Watermelon (97103) v1	cmawmB697
CmaCh04G000550	Watermelon (97103) v1	cmawmB713
CmaCh04G000550	Melon (DHL92) v3.6.1	cmamedB732