Carg00112 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00112
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Plastid movement impaired 2
Location	Cucurbita_argyrosperma_scaffold_001 : 546520 .. 547480 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACGCCTTTGGGCTCAAGAAGACGGTTAAGGTGATGACGGTCTCCGGTGACACGATCAAACTAACCCCCCCGGTTCAAGCTCGGGATGTCGTCAAGGACTATCCCGGCTTTGTTTTACTCGAATCCGAGGCTGTGAAACACTACGGAGTTCGAGCAAAGCCATTGGAACTCCACCAGAAGCTTAGCACGAAAAGACTCTATTTTCTTGTGGAGCTGCCTAAAGTTTCAAAAGAACAGGTGAGAGTTATGATGTAAGAGATGTTTGTTTAACACGTATGAATAAGAAAAAAAAAGGTGGGGAGAGATTTCTCCCTGTTTACTCAACTGGGTTGGGGATGGAAATTATATTCTCTATTCCACTTTGTAGTTATTTGAGTTACATTAGTTATGATTTATTTTGGCATGAAGGCTCCACGGCGAGTACGGTCGGCGATCAACATGAGTGCGAAGGATAGGCTAGAGAGCTTGATGTTGTCACGGCGGTCAGCATCGGACCTAACTATCATGAAATCGAAGAGCGTGTTGGCGGAGGAGGGCGGTGAACAGAGAGAGGGATCGGAAGCGACACGGGTGAAGGTACGGCTGCCGAAGGCGGAGGTGGAAAGGGTGTTGAAGGAGAGCAAAGATGAGGCAGAGGCAGCGGAGAGGATTATGGGGTTGTACATGGCCAAAGCCACAGAAAATCTCTGTCAAAATGAACCGAAGATGGAGAAGGAGAAGGATGTCATGATCAAGCCACGTGAGGTGCGCATGCCTTTGATTTTACCGTCTTTTTTCTTTTTCTTTTTAAATTTAATTTTACTTACCACTTCCATTTGTCATTAAGATTTACTAATTATTTTTTATGTTAAAATTGAAATGATTTTCTTCGTTAAAAATGTTAAAAATGCAGAAGCGACGAGTAAGTTTCATGACGACTGTAGAAGCAATGCCTCAAATTGCGGTAGCAACTTAA

mRNA sequence

ATGGGAAACGCCTTTGGGCTCAAGAAGACGGTTAAGGTGATGACGGTCTCCGGTGACACGATCAAACTAACCCCCCCGGTTCAAGCTCGGGATGTCGTCAAGGACTATCCCGGCTTTGTTTTACTCGAATCCGAGGCTGTGAAACACTACGGAGTTCGAGCAAAGCCATTGGAACTCCACCAGAAGCTTAGCACGAAAAGACTCTATTTTCTTGTGGAGCTGCCTAAAGTTTCAAAAGAACAGGCTCCACGGCGAGTACGGTCGGCGATCAACATGAGTGCGAAGGATAGGCTAGAGAGCTTGATGTTGTCACGGCGGTCAGCATCGGACCTAACTATCATGAAATCGAAGAGCGTGTTGGCGGAGGAGGGCGGTGAACAGAGAGAGGGATCGGAAGCGACACGGGTGAAGGTACGGCTGCCGAAGGCGGAGGTGGAAAGGGTGTTGAAGGAGAGCAAAGATGAGGCAGAGGCAGCGGAGAGGATTATGGGGTTGTACATGGCCAAAGCCACAGAAAATCTCTGTCAAAATGAACCGAAGATGGAGAAGGAGAAGGATGTCATGATCAAGCCACGTGAGAAGCGACGAGTAAGTTTCATGACGACTGTAGAAGCAATGCCTCAAATTGCGGTAGCAACTTAA

Coding sequence (CDS)

ATGGGAAACGCCTTTGGGCTCAAGAAGACGGTTAAGGTGATGACGGTCTCCGGTGACACGATCAAACTAACCCCCCCGGTTCAAGCTCGGGATGTCGTCAAGGACTATCCCGGCTTTGTTTTACTCGAATCCGAGGCTGTGAAACACTACGGAGTTCGAGCAAAGCCATTGGAACTCCACCAGAAGCTTAGCACGAAAAGACTCTATTTTCTTGTGGAGCTGCCTAAAGTTTCAAAAGAACAGGCTCCACGGCGAGTACGGTCGGCGATCAACATGAGTGCGAAGGATAGGCTAGAGAGCTTGATGTTGTCACGGCGGTCAGCATCGGACCTAACTATCATGAAATCGAAGAGCGTGTTGGCGGAGGAGGGCGGTGAACAGAGAGAGGGATCGGAAGCGACACGGGTGAAGGTACGGCTGCCGAAGGCGGAGGTGGAAAGGGTGTTGAAGGAGAGCAAAGATGAGGCAGAGGCAGCGGAGAGGATTATGGGGTTGTACATGGCCAAAGCCACAGAAAATCTCTGTCAAAATGAACCGAAGATGGAGAAGGAGAAGGATGTCATGATCAAGCCACGTGAGAAGCGACGAGTAAGTTTCATGACGACTGTAGAAGCAATGCCTCAAATTGCGGTAGCAACTTAA

Protein sequence

MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELHQKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVLAEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNEPKMEKEKDVMIKPREKRRVSFMTTVEAMPQIAVAT

Homology

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BLAST of Carg00112 vs. NCBI nr
Match: XP_022942789.1 (uncharacterized protein At1g66480 isoform X2 [Cucurbita moschata])

HSP 1 Score: 379.4 bits (973), Expect = 8.0e-102
Identity = 204/213 (95.77%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           QKLSTKRLYFLVELPK+ KEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMK KSVL
Sbjct: 61  QKLSTKRLYFLVELPKIPKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120

Query: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNEPK 180
           AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKA E++CQNE K
Sbjct: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKARESVCQNERK 180

Query: 181 MEKEKDVMIKPREKRRVSFMTTVEAMPQIAVAT 214
           MEKEKDV+IKPREKRRVSFMTT+EAMPQIAVAT
Sbjct: 181 MEKEKDVIIKPREKRRVSFMTTIEAMPQIAVAT 213

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BLAST of Carg00112 vs. NCBI nr
Match: XP_023515798.1 (uncharacterized protein At1g66480 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.9 bits (969), Expect = 2.3e-101
Identity = 204/213 (95.77%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN FGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           QKLSTKRLYFLVELPKV KEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMK KSVL
Sbjct: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120

Query: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNEPK 180
           AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKA E++CQNE  
Sbjct: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKARESVCQNEKT 180

Query: 181 MEKEKDVMIKPREKRRVSFMTTVEAMPQIAVAT 214
           MEKEKDVMIKPREKRRVSFMTT+EAMPQIAVAT
Sbjct: 181 MEKEKDVMIKPREKRRVSFMTTIEAMPQIAVAT 213

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BLAST of Carg00112 vs. NCBI nr
Match: XP_022942788.1 (uncharacterized protein At1g66480 isoform X1 [Cucurbita moschata])

HSP 1 Score: 374.0 bits (959), Expect = 3.4e-100
Identity = 204/216 (94.44%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           QKLSTKRLYFLVELPK+ KEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMK KSVL
Sbjct: 61  QKLSTKRLYFLVELPKIPKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120

Query: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNEPK 180
           AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKA E++CQNE K
Sbjct: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKARESVCQNERK 180

Query: 181 MEKEKDVMIKPRE---KRRVSFMTTVEAMPQIAVAT 214
           MEKEKDV+IKPRE   KRRVSFMTT+EAMPQIAVAT
Sbjct: 181 MEKEKDVIIKPREKMQKRRVSFMTTIEAMPQIAVAT 216

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BLAST of Carg00112 vs. NCBI nr
Match: XP_022986406.1 (uncharacterized protein At1g66480 isoform X2 [Cucurbita maxima])

HSP 1 Score: 358.2 bits (918), Expect = 1.9e-95
Identity = 195/214 (91.12%), Postives = 201/214 (93.93%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN FGLKKT KVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           QKLSTKRLYFLVELPKV KEQAPRRVRS INMSAKDRLESLMLSRRSASDLTIMK KSVL
Sbjct: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120

Query: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNEPK 180
           AEEG  ++EGSEATRVKVRLPKAEVERVLKES+DEAEAAERIMGLYMAKATEN+CQN  K
Sbjct: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQK 180

Query: 181 MEKEKDVMIKPREK-RRVSFMTTVEAMPQIAVAT 214
           MEKEKDV+IKPREK RRVSFM T+EAMPQI V T
Sbjct: 181 MEKEKDVIIKPREKRRRVSFMATIEAMPQIEVTT 214

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BLAST of Carg00112 vs. NCBI nr
Match: XP_022986400.1 (uncharacterized protein At1g66480 isoform X1 [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 4.2e-95
Identity = 195/217 (89.86%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN FGLKKT KVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           QKLSTKRLYFLVELPKV KEQAPRRVRS INMSAKDRLESLMLSRRSASDLTIMK KSVL
Sbjct: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120

Query: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNEPK 180
           AEEG  ++EGSEATRVKVRLPKAEVERVLKES+DEAEAAERIMGLYMAKATEN+CQN  K
Sbjct: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQK 180

Query: 181 MEKEKDVMIKPREK----RRVSFMTTVEAMPQIAVAT 214
           MEKEKDV+IKPREK    RRVSFM T+EAMPQI V T
Sbjct: 181 MEKEKDVIIKPREKMEKRRRVSFMATIEAMPQIEVTT 217

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BLAST of Carg00112 vs. TAIR10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-42
Identity = 112/223 (50.22%), Postives = 141/223 (63.23%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKT KVM + G+T KL  PV A +V+KD+PG VLL+SE+VKHYG RAKPLE  
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           Q+L  KRLYF+VE     KE  PRRVRS I++SAK+RLESLML+RRS+SDL+I+K     
Sbjct: 61  QRLEAKRLYFVVE---PVKECPPRRVRSGIHVSAKERLESLMLARRSSSDLSILKPXXXX 120

Query: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAK-----ATENLC 180
                E        RVKVR+PKAE+E+++KE   EAEA ++I  L+MAK     A +N  
Sbjct: 121 XXXXXE----GAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQRQEEAYQNTR 180

Query: 181 QNEPKMEKEKDVM------IKPREKRRVSFMTTVEAMPQIAVA 213
           Q+EP               +K R K RVSFM       +I VA
Sbjct: 181 QDEPATXXXXXXXXXXXRGVKSRLK-RVSFMAERGGGSEITVA 215

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BLAST of Carg00112 vs. TAIR10
Match: AT1G71015.1 (unknown protein)

HSP 1 Score: 164.5 bits (415), Expect = 7.3e-41
Identity = 91/165 (55.15%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKT  +M ++G++ KL  PV+A  VVKD+PG VLLESEAVK  G+RAKPLE H
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           Q L +KR+YF+VELP+  KE+ PRRVRS I MSAK+RLE+L LSRRS+SDL++MK K+  
Sbjct: 61  QNLESKRIYFMVELPRTWKERTPRRVRSGIQMSAKERLENLKLSRRSSSDLSVMKKKT-- 120

Query: 121 AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGL 166
            E   E+RE S    VK++LPK ++E++ KES+  ++ + +I  L
Sbjct: 121 -EVNDEEREVSS---VKLKLPKWKIEKLRKESESGSDFSNKITQL 159

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BLAST of Carg00112 vs. TAIR10
Match: AT1G66480.1 (plastid movement impaired 2)

HSP 1 Score: 141.0 bits (354), Expect = 8.7e-34
Identity = 83/183 (45.36%), Postives = 124/183 (67.76%), Query Frame = 0


Query: 1   MGNAFGLK-KTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLEL 60
           MGN+  +K K  KVM + G+T ++  PV AR+V  DYPG+VLL+S+AVKH+GVR+KPLE 
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  HQKLSTKRLYFLVELPKVSKEQAP---------RRVRSAINMSAKDRLESLMLSRRSASD 120
           +Q L  K+ YFLVELPK+  E            RRV S I++ AK+RL+ LMLSRR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 LTIMKSKSVLAEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEA-AERIMGLYMAK 173
           +TI +S      +G     G   T V++RLP++++ ++++E+ ++A A AE+I+G+YM +
Sbjct: 121 VTIGRSD---GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMER 180

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BLAST of Carg00112 vs. TAIR10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 80/171 (46.78%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 1   MGNAFGLKKT-VKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLEL 60
           MGN   +++  VKVM + GD  +L  PV A D  K+YPGFVLL+SE VK  GVRAKPLE 
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 61  HQKLSTKRLYFLVELPKVSKEQ--APRRVRSA-INMSAKDRLESLMLSRRSASDLTIMKS 120
           +Q L     YFLV+LP V K      RRV S  I++ AK+RLE LMLSRR+ SD+   +S
Sbjct: 61  NQILKPNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARS 120

Query: 121 KSVLAEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYM 168
             V     G+  E    TRV++RLP++++ ++++ES D +E A +I+  YM
Sbjct: 121 DVV-----GDGPELGH-TRVRLRLPRSQITKLMEESHDASEVAAKIISAYM 165

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BLAST of Carg00112 vs. Swiss-Prot
Match: sp|Q6NLC8|Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 83/183 (45.36%), Postives = 124/183 (67.76%), Query Frame = 0


Query: 1   MGNAFGLK-KTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLEL 60
           MGN+  +K K  KVM + G+T ++  PV AR+V  DYPG+VLL+S+AVKH+GVR+KPLE 
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  HQKLSTKRLYFLVELPKVSKEQAP---------RRVRSAINMSAKDRLESLMLSRRSASD 120
           +Q L  K+ YFLVELPK+  E            RRV S I++ AK+RL+ LMLSRR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 LTIMKSKSVLAEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEA-AERIMGLYMAK 173
           +TI +S      +G     G   T V++RLP++++ ++++E+ ++A A AE+I+G+YM +
Sbjct: 121 VTIGRSD---GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMER 180

[Close]

BLAST of Carg00112 vs. TrEMBL
Match: tr|A0A1S3C0K8|A0A1S3C0K8_CUCME (uncharacterized protein At1g66480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495093 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.9e-75
Identity = 166/215 (77.21%), Postives = 182/215 (84.65%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN FG+KKTVKVM +SG+T+KL  PVQ  DVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           QKLSTKRLYFLV+LPK+ KEQAPRRVRSAINMSAKDRLESLML+RRSASDLTIMK KSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 121 AEEGGEQ--REGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNE 180
            EEGG +            VRLPKAEVER+LKE KDEAEAAERIMGLY  K  E++C+N+
Sbjct: 121 TEEGGGESXXXXXXXXXXXVRLPKAEVERLLKECKDEAEAAERIMGLY--KTRESVCEND 180

Query: 181 PKMEKEKDVMIKPREKRRVSFMTTVEAMPQIAVAT 214
            K EKEK  +IKPREKRRVSFMTT+EA  QIAVA+
Sbjct: 181 HK-EKEKKDIIKPREKRRVSFMTTMEAGTQIAVAS 212

[Close]

BLAST of Carg00112 vs. TrEMBL
Match: tr|A0A1S3BZC7|A0A1S3BZC7_CUCME (uncharacterized protein At1g66480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495093 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 4.7e-74
Identity = 166/216 (76.85%), Postives = 182/216 (84.26%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN FG+KKTVKVM +SG+T+KL  PVQ  DVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           QKLSTKRLYFLV+LPK+ KEQAPRRVRSAINMSAKDRLESLML+RRSASDLTIMK KSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 121 AEEGGEQ--REGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNE 180
            EEGG +            VRLPKAEVER+LKE KDEAEAAERIMGLY  K  E++C+N+
Sbjct: 121 TEEGGGESXXXXXXXXXXXVRLPKAEVERLLKECKDEAEAAERIMGLY--KTRESVCEND 180

Query: 181 PKMEKEKDVMIKPRE-KRRVSFMTTVEAMPQIAVAT 214
            K EKEK  +IKPRE KRRVSFMTT+EA  QIAVA+
Sbjct: 181 HK-EKEKKDIIKPREKKRRVSFMTTMEAGTQIAVAS 213

[Close]

BLAST of Carg00112 vs. TrEMBL
Match: tr|A0A1R3GR43|A0A1R3GR43_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24037 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.6e-52
Identity = 135/227 (59.47%), Postives = 160/227 (70.48%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN  G KK  K+M ++G+TIK+  PV+A +VVKDYPG VLLESE+VKHYG+RAKPL  H
Sbjct: 1   MGNTLGGKKFTKIMKINGETIKMKTPVKAEEVVKDYPGHVLLESESVKHYGIRAKPLLGH 60

Query: 61  QKLSTKRLYFLVELPKVSKE-QAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKS- 120
           Q L  KRLYFLVELP+  KE + PRRVRS INMSAKDRLESLMLSRRS SDLT+MK KS 
Sbjct: 61  QNLEPKRLYFLVELPEAPKEIKVPRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPKSC 120

Query: 121 VLAEEGGEQREGSE--ATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQ 180
           V+ EE  E+ E SE  ATRVK+RLPKAEVER++KES +EAEAAE+IM L +A A      
Sbjct: 121 VIPEETAEEVERSENGATRVKLRLPKAEVERLMKESANEAEAAEKIMQLCIANANATSND 180

Query: 181 NEPKMEKEK----------DVMIKPREKRRVSFMTTVEAMPQIAVAT 214
           N P+   ++              K REK RVSF+   E   QIAV +
Sbjct: 181 NSPRGGVDEMHWKSSHGRVGQGFKAREK-RVSFLPISEGGSQIAVTS 226

[Close]

BLAST of Carg00112 vs. TrEMBL
Match: tr|A0A2I4GIL2|A0A2I4GIL2_9ROSI (uncharacterized protein At1g66480-like OS=Juglans regia OX=51240 GN=LOC109008172 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 130/235 (55.32%), Postives = 162/235 (68.94%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKT KV+ ++G+T+KL  PVQA +VVKDYPG VLL+SEAVKHYG+RAK LE H
Sbjct: 1   MGNSLGAKKTAKVIKINGETLKLKTPVQAGEVVKDYPGHVLLDSEAVKHYGIRAKALEPH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           Q L  +RLYF VELP+  KE+ PRRVRS INMSAKDRLESLMLSRRS SDL+IMK  S++
Sbjct: 61  QLLEPRRLYFQVELPQPPKERVPRRVRSEINMSAKDRLESLMLSRRSVSDLSIMKPTSIM 120

Query: 121 AEEGGEQREGSE--ATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNE 180
            E   E +EGS+  A R+++RLPKAEVE+++KESKDEAEAAE+I+ L  A  + N  +  
Sbjct: 121 LE---ESKEGSQNGAVRLRMRLPKAEVEKLMKESKDEAEAAEKILNLCRASNSNNGGREV 180

Query: 181 PKMEKEKDVMI---KPR-----------------EKRRVSFMTTVEAMPQIAVAT 214
                E ++M    KPR                  ++RVSFM   E   QIAVA+
Sbjct: 181 SPKGNEAEIMALEQKPRWEAHGHGRVGSRNTMKGREKRVSFMPISEGEIQIAVAS 232

[Close]

BLAST of Carg00112 vs. TrEMBL
Match: tr|V7CKB4|V7CKB4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G092800g PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 123/220 (55.91%), Postives = 157/220 (71.36%), Query Frame = 0


Query: 1   MGNAFGLKKTVKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN FG KKT KVM + G+T KL  PV+  +V+KD+PG VLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGAKKTTKVMKIDGETFKLKTPVKVEEVLKDHPGLVLLDSEAVKHYGVRAKPLEAH 60

Query: 61  QKLSTKRLYFLVELPKVSKEQAPRRVRSAINMSAKDRLESLMLSRRSASDLTIMKSKSVL 120
           ++L  KRLYFLVELP   KE  PRRVRS INMSAKDRLE+L+L+RRSASDL+IMK  ++ 
Sbjct: 61  KELHPKRLYFLVELP---KEIKPRRVRSGINMSAKDRLENLVLTRRSASDLSIMKQSNMS 120

Query: 121 -AEEGGEQREGSEATRVKVRLPKAEVERVLKESKDEAEAAERIMGLYMAKATENLCQNEP 180
             E+G  +   +   R+K+RLPKAEVE++++ SKD+AEAAERI+ LYMA  +    +N  
Sbjct: 121 DGEQGNNKENNNGGVRLKMRLPKAEVEKLIQGSKDQAEAAERIVKLYMANGSRETEENGE 180

Query: 181 KM------EKEKDVMIKPREKRRVSFMTTVEAMPQIAVAT 214
           KM      ++ K   +K   K+RVSFM   E   Q+AV +
Sbjct: 181 KMMLFDQQKQCKGDTVKESTKKRVSFMAMNEGGTQVAVVS 217

The following BLAST results are available for this feature:

BLAST of Carg00112 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942789.1	8.0e-102	95.77	uncharacterized protein At1g66480 isoform X2 [Cucurbita moschata]	[more]
XP_023515798.1	2.3e-101	95.77	uncharacterized protein At1g66480 [Cucurbita pepo subsp. pepo]	[more]
XP_022942788.1	3.4e-100	94.44	uncharacterized protein At1g66480 isoform X1 [Cucurbita moschata]	[more]
XP_022986406.1	1.9e-95	91.12	uncharacterized protein At1g66480 isoform X2 [Cucurbita maxima]	[more]
XP_022986400.1	4.2e-95	89.86	uncharacterized protein At1g66480 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg00112 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01340.1	2.3e-42	50.22	Encodes a protein whose expression is responsive to nematode infection.	[more]
AT1G71015.1	7.3e-41	55.15	unknown protein	[more]
AT1G66480.1	8.7e-34	45.36	plastid movement impaired 2	[more]
AT5G37840.1	1.4e-28	46.78	BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT...	[more]

BLAST of Carg00112 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NLC8\|Y1648_ARATH	1.6e-32	45.36	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 P...	[more]

BLAST of Carg00112 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0K8\|A0A1S3C0K8_CUCME	1.9e-75	77.21	uncharacterized protein At1g66480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A1S3BZC7\|A0A1S3BZC7_CUCME	4.7e-74	76.85	uncharacterized protein At1g66480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A1R3GR43\|A0A1R3GR43_COCAP	8.6e-52	59.47	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24037 PE=4 ...	[more]
tr\|A0A2I4GIL2\|A0A2I4GIL2_9ROSI	1.9e-51	55.32	uncharacterized protein At1g66480-like OS=Juglans regia OX=51240 GN=LOC109008172...	[more]
tr\|V7CKB4\|V7CKB4_PHAVU	2.5e-51	55.91	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G092800g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00112-RA	Carg00112-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 142..162
None	No IPR available	PANTHER	PTHR33148:SF3	SUBFAMILY NOT NAMED	coord: 1..209
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 1..209
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..155 e-value: 2.2E-18 score: 67.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00112	CsaUNG017640	Cucumber (Chinese Long) v2	carcuB0687
Carg00112	MELO3C018330	Melon (DHL92) v3.5.1	carmeB0662
Carg00112	ClCG07G006320	Watermelon (Charleston Gray)	carwcgB0651
Carg00112	CSPI04G27800	Wild cucumber (PI 183967)	carcpiB0701
Carg00112	CmaCh04G000550	Cucurbita maxima (Rimu)	carcmaB0949
Carg00112	CmaCh04G009980	Cucurbita maxima (Rimu)	carcmaB0948
Carg00112	CmoCh04G000480	Cucurbita moschata (Rifu)	carcmoB0924
Carg00112	CmoCh04G010760	Cucurbita moschata (Rifu)	carcmoB0923
Carg00112	Lsi04G011420	Bottle gourd (USVL1VR-Ls)	carlsiB610
Carg00112	Cp4.1LG01g06210	Cucurbita pepo (Zucchini)	carcpeB0939
Carg00112	Cp4.1LG01g07570	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00112	CsGy5G010230	Cucumber (Gy14) v2	carcgybB0671
Carg00112	MELO3C034251.2	Melon (DHL92) v3.6.1	carmedB0673
Carg00112	CsaV3_5G013600	Cucumber (Chinese Long) v3	carcucB0709
Carg00112	Cla97C07G134240	Watermelon (97103) v2	carwmbB0700
Carg00112	Bhi07G000280	Wax gourd	carwgoB0785

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00112	Carg22002	Silver-seed gourd	carcarB214

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00112	Wild cucumber (PI 183967)	carcpiB0704
Carg00112	Cucumber (Chinese Long) v2	carcuB0692
Carg00112	Cucumber (Chinese Long) v3	carcucB0705
Carg00112	Melon (DHL92) v3.5.1	carmeB0657
Carg00112	Melon (DHL92) v3.6.1	carmedB0667
Carg00112	Watermelon (97103) v1	carwmB0668