CmaCh04G009980 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G009980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Plastid movement impaired protein
Location	Cma_Chr04 : 5162523 .. 5164562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCGACTACGCCCACCATCTTCCTCTTCCCTCTTTCCAACTCTTTCCCTTTTGGCTGCCATGGGAAACACCTTTGGACTCAAGAAGACGGCTAAGGTGATGACGGTCTCCGGCGACACGATCAAACTAACCCCCCCGGTTCAAGCTCGGGATGTCGTCAAGGATTATCCCGGCTTTGTTTTACTCGAATCCGAGGCTGTGAAACACTACGGAGTTCGAGCAAAGCCATTGGAACTCCACCAAAAGCTTAGCACGAAAAGACTCTATTTTCTTGTGGAGTTGCCTAAAGTTCCAAAAGAACAGGTGAGAGTAATGATATTAGAGATGTTCGGTTAACACACGATGAATAAGAAAAAAAGTGGGGAGAGATTTCTCCCCATTTACTCGACTGGGTTGGAGACGGAAATTATATTCTCTATCCTACTATGTAGTTATATGAGTTACATTAGTTATGTTTTATTTTGACATGAAGGCTCCACGGCGAGTACGGTCGGAGATCAACATGAGTGCGAAGGATAGGCTAGAGAGCTTGATGTTGTCACGACGGTCAGCATCGGACCTAACTATCATGAAACCGAAGAGCGTGTTGGCGGAGGAGGGCAGCGGGGAGAAAGAGGGATCGGAAGCGACACGAGTGAAGGTACGGCTGCCGAAGGCGGAGGTGGAAAGGGTGTTGAAGGAGAGCAGAGATGAGGCAGAGGCAGCGGAGAGGATTATGGGGTTGTACATGGCCAAAGCCACAGAAAATGTTTGTCAAAATGGACAGAAGATGGAGAAGGAGAAGGATGTCATCATCAAGCCACGTGAGGTGCGCATGCCTTTGATTTTACTTTTTTTTTTTTTTTTTAATTTTATTTTACAAAATTTGAAATGATTTTTTTTTCTTTTTTTAGAAAATGGAGAAGCGAAGACGTGTAAGTTTCATGGCGACAATAGAAGCAATGCCTCAAATTGAGGTGACAACTTAATTAACAAGAACAACAAAAATTATGGGCAAATTAATTGAAGTGACACACAGTGACGCAACTTTCTATTGAGAGTATTATGTTACGTCCTTCACTCCAATTTAAAATATTTGAATTTTGAATAGCTCGGGTAGAATATAGCTAGATTTAGTTTTTTTTTGTAAATCGGTTATGTACTTATAAATAAATTAATGTTGTACAAGTAGCTAGCTCCCTAGCGATGGAGAGCTTTTCCTTGGCTCAATATTATAGTTTAATGTTTGATATTTTCACAACTCACATCATTTACGAGAAACAAGAACTTATATTCTTGCAAACGACTTCACTTTGCTCGACTTGCTTCACATGACGAATCTTGTACATATTTATATTAGTAGGATAATATATCAAAAGACATTAATATTAAATATGAATACATGTGACTTTGCATGATTAGTGTATCAAACCATTCATGAAACTCAATTATTTATTTTATGCATTCAATGTGTCAAAAATTAATTTTAACAAGTAAGACACCATTGTATACAGATGACAACGTTGTTGTGCAAGCTATAGGAATGAAGTCAGTATAGTTGCATTTTCTATTGAAATTGTAGCTCTTATGATATATCATGACGTTTTCATTATTTTTTAAATTAATGTTATTATGTTTTCACTCTCCCATTTACTATACTATAGAAAGAAATAGAATTGTGAATCTTTTTATAAATATGCATATGAGAAATAATCTATGATCAATATATATACACATGCAAAATATCTTACATATGAATCATGCTTCAATAGGATATTGCATTTAGTAGTTTAATAAAATCATGACATAAACACTTTAGTGAAACTTTATAGTACATTTTAATTCGTGGGCTTGGAAATTGGCTAGTGTGGGAGCTGGGTCGTGTCAATGTTGCCTATCTTCAGGTGTTGGGATGGGTTTGTGGGATGAGTTTCGACTCGTCCCCGATCCAACCCGACAGATCTCGTCTCCCTTACCCGAAACAAACTCAAATCTGCACTTTCACCTCTCCTCCAGCGATCTTCCATGACAGCATTTTGGTTGTGGATTCGTGGTGCTAA

mRNA sequence

TCTTCGACTACGCCCACCATCTTCCTCTTCCCTCTTTCCAACTCTTTCCCTTTTGGCTGCCATGGGAAACACCTTTGGACTCAAGAAGACGGCTAAGGTGATGACGGTCTCCGGCGACACGATCAAACTAACCCCCCCGGTTCAAGCTCGGGATGTCGTCAAGGATTATCCCGGCTTTGTTTTACTCGAATCCGAGGCTGTGAAACACTACGGAGTTCGAGCAAAGCCATTGGAACTCCACCAAAAGCTTAGCACGAAAAGACTCTATTTTCTTGTGGAGTTGCCTAAAGTTCCAAAAGAACAGGCTCCACGGCGAGTACGGTCGGAGATCAACATGAGTGCGAAGGATAGGCTAGAGAGCTTGATGTTGTCACGACGGTCAGCATCGGACCTAACTATCATGAAACCGAAGAGCGTGTTGGCGGAGGAGGGCAGCGGGGAGAAAGAGGGATCGGAAGCGACACGAGTGAAGGTACGGCTGCCGAAGGCGGAGGTGGAAAGGGTGTTGAAGGAGAGCAGAGATGAGGCAGAGGCAGCGGAGAGGATTATGGGGTTGTACATGGCCAAAGCCACAGAAAATGTTTGTCAAAATGGACAGAAGATGGAGAAGGAGAAGGATGTCATCATCAAGCCACGTGAGAAAATGGAGAAGCGAAGACGTGTAAGTTTCATGGCGACAATAGAAGCAATGCCTCAAATTGAGGTGTTGGGATGGGTTTGTGGGATGAGTTTCGACTCGTCCCCGATCCAACCCGACAGATCTCGTCTCCCTTACCCGAAACAAACTCAAATCTGCACTTTCACCTCTCCTCCAGCGATCTTCCATGACAGCATTTTGGTTGTGGATTCGTGGTGCTAA

Coding sequence (CDS)

ATGGGAAACACCTTTGGACTCAAGAAGACGGCTAAGGTGATGACGGTCTCCGGCGACACGATCAAACTAACCCCCCCGGTTCAAGCTCGGGATGTCGTCAAGGATTATCCCGGCTTTGTTTTACTCGAATCCGAGGCTGTGAAACACTACGGAGTTCGAGCAAAGCCATTGGAACTCCACCAAAAGCTTAGCACGAAAAGACTCTATTTTCTTGTGGAGTTGCCTAAAGTTCCAAAAGAACAGGCTCCACGGCGAGTACGGTCGGAGATCAACATGAGTGCGAAGGATAGGCTAGAGAGCTTGATGTTGTCACGACGGTCAGCATCGGACCTAACTATCATGAAACCGAAGAGCGTGTTGGCGGAGGAGGGCAGCGGGGAGAAAGAGGGATCGGAAGCGACACGAGTGAAGGTACGGCTGCCGAAGGCGGAGGTGGAAAGGGTGTTGAAGGAGAGCAGAGATGAGGCAGAGGCAGCGGAGAGGATTATGGGGTTGTACATGGCCAAAGCCACAGAAAATGTTTGTCAAAATGGACAGAAGATGGAGAAGGAGAAGGATGTCATCATCAAGCCACGTGAGAAAATGGAGAAGCGAAGACGTGTAAGTTTCATGGCGACAATAGAAGCAATGCCTCAAATTGAGGTGTTGGGATGGGTTTGTGGGATGAGTTTCGACTCGTCCCCGATCCAACCCGACAGATCTCGTCTCCCTTACCCGAAACAAACTCAAATCTGCACTTTCACCTCTCCTCCAGCGATCTTCCATGACAGCATTTTGGTTGTGGATTCGTGGTGCTAA

Protein sequence

MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELHQKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVLAEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQKMEKEKDVIIKPREKMEKRRRVSFMATIEAMPQIEVLGWVCGMSFDSSPIQPDRSRLPYPKQTQICTFTSPPAIFHDSILVVDSWC

Homology

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BLAST of CmaCh04G009980 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-34
Identity = 85/183 (46.45%), Postives = 127/183 (69.40%), Query Frame = 1


Query: 1   MGNTFGLK-KTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLEL 60
           MGN+  +K K AKVM + G+T ++  PV AR+V  DYPG+VLL+S+AVKH+GVR+KPLE 
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  HQKLSTKRLYFLVELPKVPKEQAP---------RRVRSEINMSAKDRLESLMLSRRSASD 120
           +Q L  K+ YFLVELPK+P E            RRV S I++ AK+RL+ LMLSRR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 LTIMKPKSVLAEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEA-AERIMGLYMAK 173
           +TI +       +G G + G   T V++RLP++++ ++++E+ ++A A AE+I+G+YM +
Sbjct: 121 VTIGRSD---GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMER 180

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BLAST of CmaCh04G009980 vs. TrEMBL
Match: B9HW76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12400g PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.6e-55
Identity = 135/225 (60.00%), Postives = 155/225 (68.89%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKTAKVM +SG+T K   PV+A +VVKDYPG VLLESEAVKHYG+RAKPLE H
Sbjct: 1   MGNSLGWKKTAKVMKISGETFKFKTPVKAGEVVKDYPGHVLLESEAVKHYGIRAKPLEAH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q L  KRLYFLVELPK P E+ PRRVRS INMSAKDRLESLMLSRRS SDL+IMKP S+ 
Sbjct: 61  QDLVPKRLYFLVELPKTPTEKVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPASIE 120

Query: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQK 180
           AEE       S A RVK+RLPKAEVE++++ES+DE EAA +I+ L MA   E+     Q 
Sbjct: 121 AEEAK-----SGAMRVKMRLPKAEVEKLMQESKDETEAAAKIVDLCMANTAESALLQQQV 180

Query: 181 MEK-------EKDVIIKPREKMEKRRRVSFMATIEAMPQIEVLGW 219
             K           IIK REK     RVSF+   E   QI V  +
Sbjct: 181 HWKSAGHGRVSSQGIIKAREK-----RVSFLPVNEGETQIAVASY 215

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BLAST of CmaCh04G009980 vs. TrEMBL
Match: B9HJA1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.2e-53
Identity = 133/225 (59.11%), Postives = 156/225 (69.33%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNT G KKTAKVM ++G+T K   PV+A DVVKDYPG VLLESEAVKHYG+RAKPLE H
Sbjct: 1   MGNTLGGKKTAKVMKINGETFKFKTPVKAGDVVKDYPGHVLLESEAVKHYGIRAKPLEAH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q L  KRLYFLVELP+ P E+ PRRVRS INMSAKDRLESLMLSRRS SDL+IMKP S++
Sbjct: 61  QDLVPKRLYFLVELPETPTERVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPSSIV 120

Query: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQK 180
           +EE    K G  A RVK+RLPK +VE++++ES+DEAEAA +I+ L MA        + Q 
Sbjct: 121 SEEA---KRG--AMRVKMRLPKEQVEKLMQESKDEAEAAAKILDLCMANTAGESGLSQQV 180

Query: 181 MEKE-------KDVIIKPREKMEKRRRVSFMATIEAMPQIEVLGW 219
             K           IIK REK     RVSF+   E   QI V  +
Sbjct: 181 HWKSGGHGRVGNQGIIKAREK-----RVSFLPFSEGEMQIAVASY 215

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BLAST of CmaCh04G009980 vs. TrEMBL
Match: A0A061E984_THECC (Encodes a protein whose expression is responsive to nematode infection, putative OS=Theobroma cacao GN=TCM_047008 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.5e-52
Identity = 130/225 (57.78%), Postives = 158/225 (70.22%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKT KVM ++G+T KL  PV+A +VVKDYPG VLLESE+VKH+G+RAKPL+ H
Sbjct: 1   MGNSLGGKKTTKVMKINGETFKLKTPVKAEEVVKDYPGHVLLESESVKHFGIRAKPLQSH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q L  KRLYFLVELP+ PKE   RRVRS INMSAKDRLESLMLSRRS SDLT+MKPK V+
Sbjct: 61  QSLEPKRLYFLVELPEAPKEIVTRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPKCVI 120

Query: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQK 180
            EE   E   S A RVK+RLP+AEVER++KES +EAEAAE+IM L +A    +  +  QK
Sbjct: 121 PEESEEEGSESGAMRVKMRLPRAEVERLMKESNNEAEAAEKIMQLCVANTRNSPREAAQK 180

Query: 181 ----MEKEKDVIIKPR-----EKMEKR-RRVSFMATIEAMPQIEV 216
               +  ++ V  K       E+ + R +RVSF    E   QI V
Sbjct: 181 GNGRLSLQQQVHWKGSHGRVGERFKAREKRVSFTPISEGGSQIAV 225

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BLAST of CmaCh04G009980 vs. TrEMBL
Match: V7CKB4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G092800g PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 122/219 (55.71%), Postives = 160/219 (73.06%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNTFG KKT KVM + G+T KL  PV+  +V+KD+PG VLL+SEAVKHYGVRAKPLE H
Sbjct: 1   MGNTFGAKKTTKVMKIDGETFKLKTPVKVEEVLKDHPGLVLLDSEAVKHYGVRAKPLEAH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           ++L  KRLYFLVEL   PKE  PRRVRS INMSAKDRLE+L+L+RRSASDL+IMK  ++ 
Sbjct: 61  KELHPKRLYFLVEL---PKEIKPRRVRSGINMSAKDRLENLVLTRRSASDLSIMKQSNMS 120

Query: 121 -AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQ 180
             E+G+ ++  +   R+K+RLPKAEVE++++ S+D+AEAAERI+ LYMA  +    +NG+
Sbjct: 121 DGEQGNNKENNNGGVRLKMRLPKAEVEKLIQGSKDQAEAAERIVKLYMANGSRETEENGE 180

Query: 181 KME--KEKDVIIKPREKMEKRRRVSFMATIEAMPQIEVL 217
           KM    ++        K   ++RVSFMA  E   Q+ V+
Sbjct: 181 KMMLFDQQKQCKGDTVKESTKKRVSFMAMNEGGTQVAVV 216

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BLAST of CmaCh04G009980 vs. TrEMBL
Match: A0A0D2PTY5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162500 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.4e-51
Identity = 127/226 (56.19%), Postives = 156/226 (69.03%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KK  KVM ++G+T+KL  PV+A  VVKDYPG VLLESEAVKH+G+RAKPL+ H
Sbjct: 1   MGNSLGGKKMTKVMKINGETMKLKTPVRAEQVVKDYPGHVLLESEAVKHFGIRAKPLQSH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q L  KRLYFLVELP+ PKE+ PRRVRS INMSAKDRLESLMLSRRS SDLT+MKP   +
Sbjct: 61  QNLEPKRLYFLVELPEAPKERVPRRVRSGINMSAKDRLESLMLSRRSVSDLTLMKPIIAI 120

Query: 121 AEEGSGEKEG---SEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQN 180
            EE + E+ G   S A RVK+RLPK++VER++KES +E EAAE+IM L +A        N
Sbjct: 121 PEEENEEEGGGSESGAMRVKMRLPKSQVERLIKESLNEREAAEKIMQLCVANT-----GN 180

Query: 181 GQKMEKEKDVIIKPREK--------MEKRRRVSFMATIEAMPQIEV 216
             + E +K   +  +            + +RVSFMA  E   QI V
Sbjct: 181 SSRAEADKQPQLHWKASHGSIGDGFKAREKRVSFMAMNEGGSQIAV 221

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BLAST of CmaCh04G009980 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 174.5 bits (441), Expect = 8.8e-44
Identity = 111/211 (52.61%), Postives = 142/211 (67.30%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKT KVM + G+T KL  PV A +V+KD+PG VLL+SE+VKHYG RAKPLE  
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q+L  KRLYF+VE     KE  PRRVRS I++SAK+RLESLML+RRS+SDL+I+KP    
Sbjct: 61  QRLEAKRLYFVVE---PVKECPPRRVRSGIHVSAKERLESLMLARRSSSDLSILKPPGGW 120

Query: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAK-ATENVCQNGQ 180
             E   E+EG+   RVKVR+PKAE+E+++KE   EAEA ++I  L+MAK   E   QN +
Sbjct: 121 TTE---EEEGA-VRRVKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQRQEEAYQNTR 180

Query: 181 KMEKEKD-----VIIKPREKMEKRRRVSFMA 206
           + E              R    + +RVSFMA
Sbjct: 181 QDEPATTATATATTTATRGVKSRLKRVSFMA 204

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BLAST of CmaCh04G009980 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 89/165 (53.94%), Postives = 122/165 (73.94%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKTA +M ++G++ KL  PV+A  VVKD+PG VLLESEAVK  G+RAKPLE H
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q L +KR+YF+VELP+  KE+ PRRVRS I MSAK+RLE+L LSRRS+SDL++MK K+ +
Sbjct: 61  QNLESKRIYFMVELPRTWKERTPRRVRSGIQMSAKERLENLKLSRRSSSDLSVMKKKTEV 120

Query: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGL 166
            +      E  E + VK++LPK ++E++ KES   ++ + +I  L
Sbjct: 121 ND------EEREVSSVKLKLPKWKIEKLRKESESGSDFSNKITQL 159

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BLAST of CmaCh04G009980 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-35
Identity = 85/183 (46.45%), Postives = 127/183 (69.40%), Query Frame = 1


Query: 1   MGNTFGLK-KTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLEL 60
           MGN+  +K K AKVM + G+T ++  PV AR+V  DYPG+VLL+S+AVKH+GVR+KPLE 
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  HQKLSTKRLYFLVELPKVPKEQAP---------RRVRSEINMSAKDRLESLMLSRRSASD 120
           +Q L  K+ YFLVELPK+P E            RRV S I++ AK+RL+ LMLSRR+ SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 LTIMKPKSVLAEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEA-AERIMGLYMAK 173
           +TI +       +G G + G   T V++RLP++++ ++++E+ ++A A AE+I+G+YM +
Sbjct: 121 VTIGRSD---GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMER 180

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BLAST of CmaCh04G009980 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-29
Identity = 80/171 (46.78%), Postives = 109/171 (63.74%), Query Frame = 1


Query: 1   MGNTFGLKKT-AKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLEL 60
           MGNT  +++   KVM + GD  +L  PV A D  K+YPGFVLL+SE VK  GVRAKPLE 
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 61  HQKLSTKRLYFLVELPKVPKEQ--APRRVRS-EINMSAKDRLESLMLSRRSASDLTIMKP 120
           +Q L     YFLV+LP V K      RRV S  I++ AK+RLE LMLSRR+ SD+   + 
Sbjct: 61  NQILKPNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARS 120

Query: 121 KSVLAEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYM 168
             V    G G + G   TRV++RLP++++ ++++ES D +E A +I+  YM
Sbjct: 121 DVV----GDGPELGH--TRVRLRLPRSQITKLMEESHDASEVAAKIISAYM 165

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BLAST of CmaCh04G009980 vs. NCBI nr
Match: gi|659109562|ref|XP_008454771.1| (PREDICTED: uncharacterized protein At1g66480 isoform X1 [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 3.2e-80
Identity = 174/217 (80.18%), Postives = 187/217 (86.18%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNTFG+KKT KVM +SG+T+KL  PVQ  DVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           QKLSTKRLYFLV+LPK+PKEQAPRRVRS INMSAKDRLESLML+RRSASDLTIMKPKSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 121 AEEGSGEKE--GSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNG 180
            EEG GE E  GS ATRVKVRLPKAEVER+LKE +DEAEAAERIMGLY  K  E+VC+N 
Sbjct: 121 TEEGGGESEGSGSGATRVKVRLPKAEVERLLKECKDEAEAAERIMGLY--KTRESVCEND 180

Query: 181 QKMEKEKDVIIKPREKMEKRRRVSFMATIEAMPQIEV 216
            K EKEK  IIKPR   EK+RRVSFM T+EA  QI V
Sbjct: 181 HK-EKEKKDIIKPR---EKKRRVSFMTTMEAGTQIAV 211

[Close]

BLAST of CmaCh04G009980 vs. NCBI nr
Match: gi|659109564|ref|XP_008454773.1| (PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 7.2e-80
Identity = 174/217 (80.18%), Postives = 186/217 (85.71%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNTFG+KKT KVM +SG+T+KL  PVQ  DVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           QKLSTKRLYFLV+LPK+PKEQAPRRVRS INMSAKDRLESLML+RRSASDLTIMKPKSVL
Sbjct: 61  QKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVL 120

Query: 121 AEEGSGEKE--GSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNG 180
            EEG GE E  GS ATRVKVRLPKAEVER+LKE +DEAEAAERIMGLY  K  E+VC+N 
Sbjct: 121 TEEGGGESEGSGSGATRVKVRLPKAEVERLLKECKDEAEAAERIMGLY--KTRESVCEND 180

Query: 181 QKMEKEKDVIIKPREKMEKRRRVSFMATIEAMPQIEV 216
            K EKEK  IIKPREK    RRVSFM T+EA  QI V
Sbjct: 181 HK-EKEKKDIIKPREK----RRVSFMTTMEAGTQIAV 210

[Close]

BLAST of CmaCh04G009980 vs. NCBI nr
Match: gi|449445353|ref|XP_004140437.1| (PREDICTED: uncharacterized protein At1g66480 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 5.3e-75
Identity = 166/219 (75.80%), Postives = 184/219 (84.02%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNTFG+KKT KVM +SG+T+KL  PVQA DVVKDYPGFVLLESEAVKHYGVRAKPLELH
Sbjct: 1   MGNTFGVKKTVKVMKISGETMKLKTPVQAGDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           QKLSTKRLYFLV+LP++PKEQAPRRVRS INMSAKDRLESLML+RRSASDLTIMKPKS+L
Sbjct: 61  QKLSTKRLYFLVDLPRLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSML 120

Query: 121 AEEGSGE-KEGSEA---TRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQ 180
            EEG GE +EGS +   TRVK+RLPKAEVER+LKE +DEAEAAERIMGLY  K  EN  +
Sbjct: 121 TEEGGGESEEGSVSGAPTRVKMRLPKAEVERLLKECKDEAEAAERIMGLY--KTRENAYE 180

Query: 181 NGQKMEKEKDVIIKPREKMEKRRRVSFMATIEAMPQIEV 216
           N  K ++ K  IIKPREK    RRVSFM T+E   QI V
Sbjct: 181 NDHKEKEIKKDIIKPREK----RRVSFMTTMEGGTQIAV 213

[Close]

BLAST of CmaCh04G009980 vs. NCBI nr
Match: gi|224111518|ref|XP_002315887.1| (hypothetical protein POPTR_0010s12400g [Populus trichocarpa])

HSP 1 Score: 222.6 bits (566), Expect = 8.0e-55
Identity = 135/225 (60.00%), Postives = 155/225 (68.89%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGN+ G KKTAKVM +SG+T K   PV+A +VVKDYPG VLLESEAVKHYG+RAKPLE H
Sbjct: 1   MGNSLGWKKTAKVMKISGETFKFKTPVKAGEVVKDYPGHVLLESEAVKHYGIRAKPLEAH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q L  KRLYFLVELPK P E+ PRRVRS INMSAKDRLESLMLSRRS SDL+IMKP S+ 
Sbjct: 61  QDLVPKRLYFLVELPKTPTEKVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPASIE 120

Query: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMAKATENVCQNGQK 180
           AEE       S A RVK+RLPKAEVE++++ES+DE EAA +I+ L MA   E+     Q 
Sbjct: 121 AEEAK-----SGAMRVKMRLPKAEVEKLMQESKDETEAAAKIVDLCMANTAESALLQQQV 180

Query: 181 MEK-------EKDVIIKPREKMEKRRRVSFMATIEAMPQIEVLGW 219
             K           IIK REK     RVSF+   E   QI V  +
Sbjct: 181 HWKSAGHGRVSSQGIIKAREK-----RVSFLPVNEGETQIAVASY 215

[Close]

BLAST of CmaCh04G009980 vs. NCBI nr
Match: gi|743784702|ref|XP_011023151.1| (PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica])

HSP 1 Score: 219.9 bits (559), Expect = 5.2e-54
Identity = 136/238 (57.14%), Postives = 162/238 (68.07%), Query Frame = 1


Query: 1   MGNTFGLKKTAKVMTVSGDTIKLTPPVQARDVVKDYPGFVLLESEAVKHYGVRAKPLELH 60
           MGNT G KKTAKVM ++G+T K   PV+A DVVKDYPG VLLESEAVKHYG RAKPLE H
Sbjct: 1   MGNTLGGKKTAKVMKINGETFKFKTPVKAGDVVKDYPGHVLLESEAVKHYGTRAKPLEAH 60

Query: 61  QKLSTKRLYFLVELPKVPKEQAPRRVRSEINMSAKDRLESLMLSRRSASDLTIMKPKSVL 120
           Q L  KRLYFLVELP+ P E+ PRRVRS INMSAKDRLESLMLSRRS SDL+IMKP S++
Sbjct: 61  QDLVPKRLYFLVELPETPTERVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKPSSIV 120

Query: 121 AEEGSGEKEGSEATRVKVRLPKAEVERVLKESRDEAEAAERIMGLYMA-------KATEN 180
           +EE    K G  A RVK+RLPK EVE++++ES+DEAEAA +I+ L +A        ++  
Sbjct: 121 SEEA---KRG--AMRVKMRLPKEEVEKLMQESKDEAEAAAKILDLCIANTAGGSNNSSRE 180

Query: 181 VCQNGQKMEKEKDV-------------IIKPREKMEKRRRVSFMATIEAMPQIEVLGW 219
           + QNGQ+    + V             IIK REK     RVSF+   E   QI V  +
Sbjct: 181 IAQNGQESGLSQQVHWKSGHGRVGNQGIIKAREK-----RVSFLPFSEGEMQIAVASY 228

The following BLAST results are available for this feature:

BLAST of CmaCh04G009980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	2.7e-34	46.45	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of CmaCh04G009980 vs. TrEMBL


Match Name	E-value	Identity	Description
B9HW76_POPTR	5.6e-55	60.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12400g PE=4 SV=1	[more]
B9HJA1_POPTR	5.2e-53	59.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1	[more]
A0A061E984_THECC	1.5e-52	57.78	Encodes a protein whose expression is responsive to nematode infection, putative...	[more]
V7CKB4_PHAVU	1.3e-51	55.71	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G092800g PE=4 SV=1	[more]
A0A0D2PTY5_GOSRA	6.4e-51	56.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162500 PE=4 SV=1	[more]

BLAST of CmaCh04G009980 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01340.1	8.8e-44	52.61	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT1G71015.1	1.2e-40	53.94	unknown protein	[more]
AT1G66480.1	1.5e-35	46.45	plastid movement impaired 2	[more]
AT5G37840.1	2.7e-29	46.78	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]

BLAST of CmaCh04G009980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109562\|ref\|XP_008454771.1\|	3.2e-80	80.18	PREDICTED: uncharacterized protein At1g66480 isoform X1 [Cucumis melo]	[more]
gi\|659109564\|ref\|XP_008454773.1\|	7.2e-80	80.18	PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo]	[more]
gi\|449445353\|ref\|XP_004140437.1\|	5.3e-75	75.80	PREDICTED: uncharacterized protein At1g66480 [Cucumis sativus]	[more]
gi\|224111518\|ref\|XP_002315887.1\|	8.0e-55	60.00	hypothetical protein POPTR_0010s12400g [Populus trichocarpa]	[more]
gi\|743784702\|ref\|XP_011023151.1\|	5.2e-54	57.14	PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G009980.1	CmaCh04G009980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..153 score: 3.9
None	No IPR available	unknown	Coil	Coil	coord: 142..162 scor
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 2..213 score: 5.8
None	No IPR available	PANTHER	PTHR33148:SF3	SUBFAMILY NOT NAMED	coord: 2..213 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G009980	Cla001950	Watermelon (97103) v1	cmawmB698
CmaCh04G009980	CsaUNG017640	Cucumber (Chinese Long) v2	cmacuB706
CmaCh04G009980	MELO3C018330	Melon (DHL92) v3.5.1	cmameB660
CmaCh04G009980	ClCG07G006320	Watermelon (Charleston Gray)	cmawcgB673
CmaCh04G009980	CSPI04G27800	Wild cucumber (PI 183967)	cmacpiB719
CmaCh04G009980	CmoCh04G010760	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G009980	CmoCh04G000480	Cucurbita moschata (Rifu)	cmacmoB731
CmaCh04G009980	Lsi04G011420	Bottle gourd (USVL1VR-Ls)	cmalsiB679
CmaCh04G009980	Cp4.1LG01g07570	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G009980	Cp4.1LG01g06210	Cucurbita pepo (Zucchini)	cmacpeB723
CmaCh04G009980	MELO3C034251.2	Melon (DHL92) v3.6.1	cmamedB748
CmaCh04G009980	CsaV3_5G013600	Cucumber (Chinese Long) v3	cmacucB0891
CmaCh04G009980	Cla97C07G134240	Watermelon (97103) v2	cmawmbB780
CmaCh04G009980	Bhi07G000280	Wax gourd	cmawgoB0889
CmaCh04G009980	CsGy5G010230	Cucumber (Gy14) v2	cgybcmaB680
CmaCh04G009980	Carg00112	Silver-seed gourd	carcmaB0948
CmaCh04G009980	Carg22002	Silver-seed gourd	carcmaB0243

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G009980	CmaCh04G000550	Cucurbita maxima (Rimu)	cmacmaB531

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G009980	Melon (DHL92) v3.5.1	cmameB645
CmaCh04G009980	Watermelon (97103) v1	cmawmB695
CmaCh04G009980	Melon (DHL92) v3.6.1	cmamedB729