CmoCh04G000370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G000370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(HB transcription factor) (Homeobox-leucine zipper protein ATHB-4)
Location	Cmo_Chr04 : 232439 .. 234412 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTATTTCTTCTTCTTTTTGGTTTGCAAAGCTTCATCAACAGACTTCCATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCTGTACCTGGCTTCACTTCATTCTCATCATCACCACTTCCTCCATCTGGTACACCAACATCTTTCTTTTAGTTGAATCTTTTTCTCTTTTAATACGGTACGAATAAATGATTAAGTACATCGTGTCATGTCGAGTAAATTTTTTTAAATTCTTAGTAGTGATTTGAAGTACTAAAAGTGTTATGTAAGTTTTGAATGGAGGATTGAAGGTGTAATGGGTTGAGTTTTTGAGTTTGGTAGCGATTTTTGGTGGCAGCGGTGCGAGATTTGGACATGAATAGAGCGCCGGATGAAGAGGAGTGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAGTACTACAATTCTCCTTCTTCTTCTTCTTCTTCTTTTCTTTATTTAATCTCTCAAAACCCCAATATTTCAATACCTTTTTTCCTCCATTTTTTTTGGTTAGAAACAAAAGGAGACTCTTGCGGAAGTGCTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGTGAATCAACTTATATCTATTCTCCGTGGATTTTGATTGTATTATAATTCTTCAAAACCTTACAAAACAAAGATTTAATCCAAAGCGAATGTGAACAAAAGAAGAAGAGGTTTGAGAAGGAACGGGAATAGGAATAGGGAATAGGGAATAGGGAATAGGGATAATCCAAACAAGTGTTGTTACTTAAACTATAACATAATGTTGTCCGTTTCCATAAAATAATAATAATGGAATTATAGGGTAAGATATGCAGCGCCACCAAGAGACAATGGGTGAGCAAAATTATGAACCAGTTATGATGTGGTTTCCCCATGAGTTTAAATATTTCAATGACACATACAATGTCGAGGCTGCTCCCCCTCGCCGCCTCGTGTGTGTGCCTTCACTACCCATATGCATATCATATTATATTTTTTATTCCATCTTTTCCCTTACCCATATGTATATCAGCTCAACATTTGCATATCTAATTCTCATGTGTGTTGGATTCCGAGTATTAAAATCATTCAAGTTTCGAAGCCATTACAACTCATTATTGTGTCACCCTATTATGGGTACAAAGATGAAGTGAAAATAAGGTGATTAAAGTAAATTTGCATACACCATTTAATTTGGTTGGGTAATAATTAGAATCCAAGAAGACAATAATGATGTTCTTGTCTTTCATGTAAAAGGGTTTCAATTTGCATTTATTTCACTTTCATGTATCTTTTTTGTTACCCACAATTATTCGTATTTTTTGTAGTCACAACATACTATTTTTCAAACTATATTATTATTGCATTTACTTTTCCTTTTGTATTAATTAAGCATTTATTTGGGTGTGAATTTAAAATCAAAATAATATAATCCATAATCACTCCATTAATTGATTTACATTTAATTATTCATAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTATTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATTTCACCACACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAAGCTGGTCGGCCGCTGCCCATTATTGCCTTTTCTTTTCTTTCCCCCCCTCATGCGGAATCATCACTCCATCTTAATCAAAATATGATTCACTCTCTTTGTTTTATCTTCTTTTTTTTCGGCGTTTTAATTTTAG

mRNA sequence

GCCTATTTCTTCTTCTTTTTGGTTTGCAAAGCTTCATCAACAGACTTCCATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCTGTACCTGGCTTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAATAGAGCGCCGGATGAAGAGGAGTGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTTGCGGAAGTGCTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTATTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATTTCACCACACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAAGCTGGTCGGCCGCTGCCCATTATTGCCTTTTCTTTTCTTTCCCCCCCTCATGCGGAATCATCACTCCATCTTAATCAAAATATGATTCACTCTCTTTGTTTTATCTTCTTTTTTTTCGGCGTTTTAATTTTAG

Coding sequence (CDS)

ATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCTGTACCTGGCTTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAATAGAGCGCCGGATGAAGAGGAGTGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTTGCGGAAGTGCTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTATTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATTTCACCACACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAA

Homology

[Close]

BLAST of CmoCh04G000370 vs. Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-57
Identity = 126/196 (64.29%), Postives = 151/196 (77.04%), Query Frame = 1


Query: 6   TNSSRLDLTISVPGFTSFSSSPLPPSA--------VRDLDMNRAP---DEEEWMMGSMEE 65
           T+ S L+LT++VPG +S  S     +         +RDLD+N+     +EEE+ MGS+EE
Sbjct: 5   TSPSGLELTMAVPGLSSSGSEGAGCNNNNAGGGCNMRDLDINQPASGGEEEEFPMGSVEE 64

Query: 66  DEENNS--GSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQ 125
           DEE     G H  KKLRL+KEQS LLE+SFR NHTL PKQKE LA  LKL+PRQVEVWFQ
Sbjct: 65  DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQ 124

Query: 126 NRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPA 185
           NRRAR+KLKQTEMECEYLKR FG LTE+N++LQ+EVEELRAM+VAPPTV+SPH+ +PLPA
Sbjct: 125 NRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPA 184

Query: 186 SNLTMCPRCERVTTTT 189
           S LTMCPRCER+T  T
Sbjct: 185 SALTMCPRCERITAAT 200

[Close]

BLAST of CmoCh04G000370 vs. Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-57
Identity = 126/196 (64.29%), Postives = 151/196 (77.04%), Query Frame = 1


Query: 6   TNSSRLDLTISVPGFTSFSSSPLPPSA--------VRDLDMNRAP---DEEEWMMGSMEE 65
           T+ S L+LT++VPG +S  S     +         +RDLD+N+     +EEE+ MGS+EE
Sbjct: 5   TSPSGLELTMAVPGLSSSGSEGAGCNNNNAGGGCNMRDLDINQPASGGEEEEFPMGSVEE 64

Query: 66  DEENNS--GSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQ 125
           DEE     G H  KKLRL+KEQS LLE+SFR NHTL PKQKE LA  LKL+PRQVEVWFQ
Sbjct: 65  DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQ 124

Query: 126 NRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPA 185
           NRRAR+KLKQTEMECEYLKR FG LTE+N++LQ+EVEELRAM+VAPPTV+SPH+ +PLPA
Sbjct: 125 NRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPA 184

Query: 186 SNLTMCPRCERVTTTT 189
           S LTMCPRCER+T  T
Sbjct: 185 SALTMCPRCERITAAT 200

[Close]

BLAST of CmoCh04G000370 vs. Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-55
Identity = 127/198 (64.14%), Postives = 142/198 (71.72%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRD---LDMNRAPDEEEWMMGSMEEDEE 60
           MA+LP NSS LDLTISVPGF+S   S       RD   LDMNR P  E+   G  EE   
Sbjct: 74  MAILPENSSNLDLTISVPGFSSSPLSDEGSGGGRDQLRLDMNRLPSSED---GDDEEFSH 133

Query: 61  NNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRAR 120
           ++  + PRKKLRLT+EQS LLE SFRQNHTLNPKQKE LA+ L L+PRQ+EVWFQNRRAR
Sbjct: 134 DDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRAR 193

Query: 121 SKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTM 180
           SKLKQTEMECEYLKRWFG LTE+N +L +EVEELRAMKV P TV S        AS+LTM
Sbjct: 194 SKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASSLTM 253

Query: 181 CPRCERVTTTTLDKTRIV 196
           CPRCERVT        +V
Sbjct: 254 CPRCERVTPAASPSRAVV 260

[Close]

BLAST of CmoCh04G000370 vs. Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-48
Identity = 118/192 (61.46%), Postives = 136/192 (70.83%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPL--PPSAVRDLDMNRAP---DEEEWMMGSMEE- 60
           MA+ P NSS LDLTIS+P   SFS SP       +RD D+N+ P   ++ EWM+G+    
Sbjct: 1   MALSP-NSSSLDLTISIP---SFSPSPSLGDHHGMRDFDINQTPKTEEDREWMIGATPHV 60

Query: 61  -DEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQN 120
            ++++NSG   RKKLRLTKEQSHLLE+SF QNHTL PKQK+ LA  LKL  RQVEVWFQN
Sbjct: 61  NEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQN 120

Query: 121 RRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPAS 180
           RRARSKLK TEMECEYLKRWFG L EQN++LQ EVEELRA+K             P   S
Sbjct: 121 RRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTS 175

Query: 181 NLTMCPRCERVT 186
            LTMCPRCERVT
Sbjct: 181 ALTMCPRCERVT 175

[Close]

BLAST of CmoCh04G000370 vs. Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 92/170 (54.12%), Postives = 120/170 (70.59%), Query Frame = 1


Query: 23  FSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNS----GSHPRKKLRLTKEQSHLL 82
           F   PL P+A R  ++  A +E   + G    DEE+      GS  RKKLRL+K+QS +L
Sbjct: 38  FLEMPLLPAAKRS-EVVAAEEERAGLRGGGGSDEEDGGCGIDGS--RKKLRLSKDQSAVL 97

Query: 83  EQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLT 142
           E SFR++ TLNP+QK TLA+ L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR    LT
Sbjct: 98  EDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLT 157

Query: 143 EQNKKLQKEVEELRAMKVAPPTVISPHSCEPL-PASNLTMCPRCERVTTT 188
           E+N++LQKEV+ELRA+K     ++SPH    + P + LTMCP CERV+ T
Sbjct: 158 EENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNT 199

[Close]

BLAST of CmoCh04G000370 vs. TrEMBL
Match: A0A0A0KJE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065660 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.9e-91
Identity = 178/198 (89.90%), Postives = 189/198 (95.45%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT++SRLDL+ISVPGF SFSS+ LPPS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTSTSRLDLSISVPGFNSFSSA-LPPSVGRDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQ+EVWFQNRRARS
Sbjct: 61  NGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHS EPLPASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRIVV
Sbjct: 181 PRCERVTTTTLDKTRIVV 197

[Close]

BLAST of CmoCh04G000370 vs. TrEMBL
Match: A0A0S3R2Y8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G269700 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.8e-74
Identity = 147/187 (78.61%), Postives = 168/187 (89.84%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNS 60
           MAVLP+ SS L+LTISVPGF S S + LP S+V++LD+N+ P EE+WM  +ME++EE+++
Sbjct: 1   MAVLPSASSTLELTISVPGFAS-SPTLLPSSSVKELDINQVPVEEDWMASNMEDEEESSN 60

Query: 61  GSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKL 120
           G  PRKKLRLTKEQS LLE+SFRQNHTLNPKQKE+LA  LKL+PRQVEVWFQNRRARSKL
Sbjct: 61  GDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKL 120

Query: 121 KQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPR 180
           KQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKV PPTVISPHSCEPLPAS LTMCPR
Sbjct: 121 KQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPR 180

Query: 181 CERVTTT 188
           CERVTTT
Sbjct: 181 CERVTTT 186

[Close]

BLAST of CmoCh04G000370 vs. TrEMBL
Match: A0A061EF99_THECC (Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.8e-74
Identity = 154/201 (76.62%), Postives = 170/201 (84.58%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSA-------VRDLDMNRAPD---EEEWMMG 60
           MAVLPT SS L+LTISVPG   FSSSP  PS+       VRDLD+N+ P    E+EW+  
Sbjct: 1   MAVLPTGSSNLELTISVPG---FSSSPSLPSSGDQGGCTVRDLDINQVPSGGAEDEWITA 60

Query: 61  SMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVW 120
           SME++EE+ +G+ PRKKLRLTKEQS LLE+SFRQNHTLNPKQKE LA  LKL+PRQVEVW
Sbjct: 61  SMEDEEESCNGAPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVW 120

Query: 121 FQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPL 180
           FQNRRARSKLKQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKV PPTVISPHSCEPL
Sbjct: 121 FQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL 180

Query: 181 PASNLTMCPRCERVTTTTLDK 192
           PAS LTMCPRCERVTTT LDK
Sbjct: 181 PASTLTMCPRCERVTTTALDK 198

[Close]

BLAST of CmoCh04G000370 vs. TrEMBL
Match: I1KM50_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G218000 PE=4 SV=2)

HSP 1 Score: 281.2 bits (718), Expect = 9.8e-73
Identity = 144/187 (77.01%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNS 60
           MAVLP++SS L+LTISVPGF S S + LP S+V++LD+N+ P EE+WM  +ME++EE+++
Sbjct: 1   MAVLPSSSSSLELTISVPGFAS-SPTLLPSSSVKELDINQVPLEEDWMASNMEDEEESSN 60

Query: 61  GSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKL 120
           G  PRKKLRLTKEQS LLE+SFRQNHTLNPKQKE+LA  LKL+PRQVEVWFQNRRARSKL
Sbjct: 61  GEPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKL 120

Query: 121 KQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPR 180
           KQTEMECEYLKRWFG LTEQN++LQ+EVEELRA+KV PPTVISPHSCEPLPAS L+MCPR
Sbjct: 121 KQTEMECEYLKRWFGSLTEQNRRLQREVEELRAIKVGPPTVISPHSCEPLPASTLSMCPR 180

Query: 181 CERVTTT 188
           CERVT+T
Sbjct: 181 CERVTST 186

[Close]

BLAST of CmoCh04G000370 vs. TrEMBL
Match: A0A0B0MRC6_GOSAR (Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 9.8e-73
Identity = 150/193 (77.72%), Postives = 165/193 (85.49%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPS----AVRDLDMNRAPDEEEWMMGSMEEDE 60
           MAVLPT SS L+LTISVPGF S  S P         VRDLD+N+ P E+EW+  SME++E
Sbjct: 1   MAVLPTGSSHLELTISVPGFASSPSFPSSGDQGGCTVRDLDINQVPAEDEWITASMEDEE 60

Query: 61  EN-NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRR 120
           E+ N+G+ PRKKLRLTKEQS LLE+SFR NHTLNPKQKE LA  LKL+PRQVEVWFQNRR
Sbjct: 61  ESCNNGAPPRKKLRLTKEQSRLLEESFRLNHTLNPKQKEALALQLKLRPRQVEVWFQNRR 120

Query: 121 ARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNL 180
           ARSKLKQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKVAPPTVISPHSCEPLPAS L
Sbjct: 121 ARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVAPPTVISPHSCEPLPASTL 180

Query: 181 TMCPRCERVTTTT 189
           TMCPRCERVTTTT
Sbjct: 181 TMCPRCERVTTTT 193

[Close]

BLAST of CmoCh04G000370 vs. TAIR10
Match: AT2G01430.1 (AT2G01430.1 homeobox-leucine zipper protein 17)

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-57
Identity = 127/198 (64.14%), Postives = 142/198 (71.72%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRD---LDMNRAPDEEEWMMGSMEEDEE 60
           MA+LP NSS LDLTISVPGF+S   S       RD   LDMNR P  E+   G  EE   
Sbjct: 74  MAILPENSSNLDLTISVPGFSSSPLSDEGSGGGRDQLRLDMNRLPSSED---GDDEEFSH 133

Query: 61  NNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRAR 120
           ++  + PRKKLRLT+EQS LLE SFRQNHTLNPKQKE LA+ L L+PRQ+EVWFQNRRAR
Sbjct: 134 DDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRAR 193

Query: 121 SKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTM 180
           SKLKQTEMECEYLKRWFG LTE+N +L +EVEELRAMKV P TV S        AS+LTM
Sbjct: 194 SKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASSLTM 253

Query: 181 CPRCERVTTTTLDKTRIV 196
           CPRCERVT        +V
Sbjct: 254 CPRCERVTPAASPSRAVV 260

[Close]

BLAST of CmoCh04G000370 vs. TAIR10
Match: AT1G70920.1 (AT1G70920.1 homeobox-leucine zipper protein 18)

HSP 1 Score: 194.5 bits (493), Expect = 6.1e-50
Identity = 118/192 (61.46%), Postives = 136/192 (70.83%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPL--PPSAVRDLDMNRAP---DEEEWMMGSMEE- 60
           MA+ P NSS LDLTIS+P   SFS SP       +RD D+N+ P   ++ EWM+G+    
Sbjct: 1   MALSP-NSSSLDLTISIP---SFSPSPSLGDHHGMRDFDINQTPKTEEDREWMIGATPHV 60

Query: 61  -DEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQN 120
            ++++NSG   RKKLRLTKEQSHLLE+SF QNHTL PKQK+ LA  LKL  RQVEVWFQN
Sbjct: 61  NEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQN 120

Query: 121 RRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPAS 180
           RRARSKLK TEMECEYLKRWFG L EQN++LQ EVEELRA+K             P   S
Sbjct: 121 RRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTS 175

Query: 181 NLTMCPRCERVT 186
            LTMCPRCERVT
Sbjct: 181 ALTMCPRCERVT 175

[Close]

BLAST of CmoCh04G000370 vs. TAIR10
Match: AT5G06710.1 (AT5G06710.1 homeobox from Arabidopsis thaliana)

HSP 1 Score: 147.5 bits (371), Expect = 8.5e-36
Identity = 90/182 (49.45%), Postives = 118/182 (64.84%), Query Frame = 1


Query: 6   TNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPR 65
           T+S +LD  I   G+   S+        RD+D     DE E        ++ ++     R
Sbjct: 142 TSSFQLDFGIKSYGYERRSNK-------RDID-----DEVERSASRASNEDNDDENGSTR 201

Query: 66  KKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEM 125
           KKLRL+K+QS  LE SF+++ TLNPKQK  LA+ L L+PRQVEVWFQNRRAR+KLKQTE+
Sbjct: 202 KKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 261

Query: 126 ECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT 185
           +CEYLKR    LTE+N++LQKEV+ELR +K + P  +       LPA+ LTMCP CERV 
Sbjct: 262 DCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTLTMCPSCERVA 305

Query: 186 TT 188
           T+
Sbjct: 322 TS 305

[Close]

BLAST of CmoCh04G000370 vs. TAIR10
Match: AT2G22800.1 (AT2G22800.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 85/172 (49.42%), Postives = 115/172 (66.86%), Query Frame = 1


Query: 14  TISVPGFTSFSSSPLPPSAVRDLDMNR-APDEEEWMMGSMEEDEENNSGSHPRKKLRLTK 73
           T S  G +SFSS  +     R+ D    +P+EEE     + +  E+  G   RKKLRLTK
Sbjct: 63  TSSHSGVSSFSSGRV---VKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTK 122

Query: 74  EQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKR 133
           +QS LLE+SF+ + TLNPKQK+ LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+
Sbjct: 123 QQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKK 182

Query: 134 WFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERV 185
               L ++N +LQKE++EL+ +K+  P  +       +PAS LT CP CER+
Sbjct: 183 CCETLADENIRLQKEIQELKTLKLTQPFYMH------MPASTLTKCPSCERI 225

[Close]

BLAST of CmoCh04G000370 vs. TAIR10
Match: AT2G44910.1 (AT2G44910.1 homeobox-leucine zipper protein 4)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-34
Identity = 84/167 (50.30%), Postives = 113/167 (67.66%), Query Frame = 1


Query: 34  RDLDMNRAPDEEEWMMGSME--------EDEENNSGSHPRKKLRLTKEQSHLLEQSFRQN 93
           RDL + R  DE E    S          +DE+  +G   RKKLRL+K+Q+ +LE++F+++
Sbjct: 123 RDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEH 182

Query: 94  HTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQ 153
            TLNPKQK  LA+ L L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N++LQ
Sbjct: 183 STLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQ 242

Query: 154 KEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKT 193
           KEV ELRA+K++P   +        P + LTMCP CERV+++    T
Sbjct: 243 KEVSELRALKLSPHLYM-----HMTPPTTLTMCPSCERVSSSAATVT 284

[Close]

BLAST of CmoCh04G000370 vs. NCBI nr
Match: gi|778698284|ref|XP_011654500.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.1e-90
Identity = 178/198 (89.90%), Postives = 189/198 (95.45%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT++SRLDL+ISVPGF SFSS+ LPPS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTSTSRLDLSISVPGFNSFSSA-LPPSVGRDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQ+EVWFQNRRARS
Sbjct: 61  NGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHS EPLPASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRIVV
Sbjct: 181 PRCERVTTTTLDKTRIVV 197

[Close]

BLAST of CmoCh04G000370 vs. NCBI nr
Match: gi|778698287|ref|XP_011654501.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 337.8 bits (865), Expect = 1.3e-89
Identity = 178/198 (89.90%), Postives = 189/198 (95.45%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT++SRLDL+ISVPGF SFSS+ LPPS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTSTSRLDLSISVPGFNSFSSA-LPPSG-RDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQ+EVWFQNRRARS
Sbjct: 61  NGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHS EPLPASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRIVV
Sbjct: 181 PRCERVTTTTLDKTRIVV 196

[Close]

BLAST of CmoCh04G000370 vs. NCBI nr
Match: gi|659109472|ref|XP_008454736.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 2.2e-89
Identity = 177/198 (89.39%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT +SRLDL+ISVPGF SFSSS L PS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTGTSRLDLSISVPGFNSFSSS-LTPSVGRDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVL LKPRQVEVWFQNRRARS
Sbjct: 61  NGNNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLNLKPRQVEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPL ASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLLASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRI+V
Sbjct: 181 PRCERVTTTTLDKTRIIV 197

[Close]

BLAST of CmoCh04G000370 vs. NCBI nr
Match: gi|659109474|ref|XP_008454737.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 2.4e-88
Identity = 177/198 (89.39%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT +SRLDL+ISVPGF SFSSS L PS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTGTSRLDLSISVPGFNSFSSS-LTPSG-RDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVL LKPRQVEVWFQNRRARS
Sbjct: 61  NGNNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLNLKPRQVEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPL ASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLLASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRI+V
Sbjct: 181 PRCERVTTTTLDKTRIIV 196

[Close]

BLAST of CmoCh04G000370 vs. NCBI nr
Match: gi|965658499|dbj|BAT74918.1| (hypothetical protein VIGAN_01269700 [Vigna angularis var. angularis])

HSP 1 Score: 285.0 bits (728), Expect = 9.7e-74
Identity = 147/187 (78.61%), Postives = 168/187 (89.84%), Query Frame = 1


Query: 1   MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNS 60
           MAVLP+ SS L+LTISVPGF S S + LP S+V++LD+N+ P EE+WM  +ME++EE+++
Sbjct: 1   MAVLPSASSTLELTISVPGFAS-SPTLLPSSSVKELDINQVPVEEDWMASNMEDEEESSN 60

Query: 61  GSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKL 120
           G  PRKKLRLTKEQS LLE+SFRQNHTLNPKQKE+LA  LKL+PRQVEVWFQNRRARSKL
Sbjct: 61  GDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKL 120

Query: 121 KQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPR 180
           KQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKV PPTVISPHSCEPLPAS LTMCPR
Sbjct: 121 KQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPR 180

Query: 181 CERVTTT 188
           CERVTTT
Sbjct: 181 CERVTTT 186

The following BLAST results are available for this feature:

BLAST of CmoCh04G000370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HOX3_ORYSJ	3.7e-57	64.29	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=...	[more]
HOX3_ORYSI	3.7e-57	64.29	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 ...	[more]
ATB17_ARATH	1.6e-55	64.14	Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 ...	[more]
ATHBX_ARATH	1.1e-48	61.46	Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV...	[more]
HOX17_ORYSI	1.2e-34	54.12	Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=...	[more]

BLAST of CmoCh04G000370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJE2_CUCSA	7.9e-91	89.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065660 PE=4 SV=1	[more]
A0A0S3R2Y8_PHAAN	6.8e-74	78.61	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G269700 PE=...	[more]
A0A061EF99_THECC	6.8e-74	76.62	Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1	[more]
I1KM50_SOYBN	9.8e-73	77.01	Uncharacterized protein OS=Glycine max GN=GLYMA_07G218000 PE=4 SV=2	[more]
A0A0B0MRC6_GOSAR	9.8e-73	77.72	Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1	[more]

BLAST of CmoCh04G000370 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01430.1	8.8e-57	64.14	homeobox-leucine zipper protein 17	[more]
AT1G70920.1	6.1e-50	61.46	homeobox-leucine zipper protein 18	[more]
AT5G06710.1	8.5e-36	49.45	homeobox from Arabidopsis thaliana	[more]
AT2G22800.1	1.2e-34	49.42	Homeobox-leucine zipper protein family	[more]
AT2G44910.1	2.7e-34	50.30	homeobox-leucine zipper protein 4	[more]

BLAST of CmoCh04G000370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698284\|ref\|XP_011654500.1\|	1.1e-90	89.90	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis sativus...	[more]
gi\|778698287\|ref\|XP_011654501.1\|	1.3e-89	89.90	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis sativus...	[more]
gi\|659109472\|ref\|XP_008454736.1\|	2.2e-89	89.39	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis melo]	[more]
gi\|659109474\|ref\|XP_008454737.1\|	2.4e-88	89.39	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis melo]	[more]
gi\|965658499\|dbj\|BAT74918.1\|	9.7e-74	78.61	hypothetical protein VIGAN_01269700 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001356	Homeobox_dom
IPR003106	Leu_zip_homeo
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0044212	transcription regulatory region DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G000370.1	CmoCh04G000370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 65..119 score: 2.0
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 63..125 score: 4.6
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 61..121 score: 17
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 121..155 score: 1.
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 121..164 score: 3.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 46..119 score: 7.1
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 51..122 score: 8.13
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 96..119 scor
None	No IPR available	unknown	Coil	Coil	coord: 134..157 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 29..196 score: 4.3
None	No IPR available	PANTHER	PTHR24326:SF114	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17-RELATED	coord: 29..196 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G000370	CmaCh04G000390	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G000370	Cla003908	Watermelon (97103) v1	cmowmB708
CmoCh04G000370	Csa5G065660	Cucumber (Chinese Long) v2	cmocuB735
CmoCh04G000370	MELO3C005327	Melon (DHL92) v3.5.1	cmomeB629
CmoCh04G000370	ClCG01G006050	Watermelon (Charleston Gray)	cmowcgB638
CmoCh04G000370	ClCG07G006750	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G000370	CSPI05G01460	Wild cucumber (PI 183967)	cmocpiB744
CmoCh04G000370	Lsi04G011650	Bottle gourd (USVL1VR-Ls)	cmolsiB673
CmoCh04G000370	Cp4.1LG01g06250	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G000370	MELO3C034475.2	Melon (DHL92) v3.6.1	cmomedB743
CmoCh04G000370	CsaV3_5G015440	Cucumber (Chinese Long) v3	cmocucB0867
CmoCh04G000370	Cla97C01G006340	Watermelon (97103) v2	cmowmbB679
CmoCh04G000370	Cla97C07G134460	Watermelon (97103) v2	cmowmbB755
CmoCh04G000370	Bhi07G000238	Wax gourd	cmowgoB0889
CmoCh04G000370	Bhi12G000756	Wax gourd	cmowgoB0826
CmoCh04G000370	CsGy5G011610	Cucumber (Gy14) v2	cgybcmoB647
CmoCh04G000370	Carg21993	Silver-seed gourd	carcmoB0250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G000370	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G000370	Cucurbita moschata (Rifu)	cmocmoB471
CmoCh04G000370	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G000370	Cucurbita maxima (Rimu)	cmacmoB746
CmoCh04G000370	Wild cucumber (PI 183967)	cmocpiB760
CmoCh04G000370	Cucumber (Chinese Long) v2	cmocuB756
CmoCh04G000370	Melon (DHL92) v3.5.1	cmomeB636
CmoCh04G000370	Melon (DHL92) v3.5.1	cmomeB653
CmoCh04G000370	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G000370	Cucumber (Gy14) v2	cgybcmoB641
CmoCh04G000370	Melon (DHL92) v3.6.1	cmomedB724
CmoCh04G000370	Silver-seed gourd	carcmoB0924
CmoCh04G000370	Cucumber (Chinese Long) v3	cmocucB0862