CmaCh04G000390 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G000390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHB transcription factor
LocationCma_Chr04 : 215669 .. 217930 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTACATCTATATTTGAGTTAACCTTTTGGATCTTCAATTTTCATCATCCACTTCCGTAGTTTTCTCTCTGTGTTTTTTCTACTTTACCTTTCTCTCTCTCTCCTCTCCCACCTCCTAAAACTGCCTATTTCTTCTTCTTCTTCTTTTTGGTTTGCAAAGCTTCATCAACAGACTTCCATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCCGTACCTGGCCTCACTTCATTCTCATCATCACCACTTCCTCCATCTGGTACACCACCATCTTTCGTTTCCTCAATCTAATTCAACTCGGATCTTTTTCTCTCTTAATAGAGTACGGATAGAGGATTAAATACATCGTACGATGTCGAGTAATTTTTTTTTAATTTTTAGTAGTGATTTTAAGTATATGATGTTTCGTGTTATAAGTTTTGAACGGATGATTGAAGGTGTAATGGGTTGAGTTTTTGAGTTTGGTAGCGATTATTGGTTGCAGCGGTGCGAGATTTGGACATGAACAGAGCGCCAGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCCCATCTTCTTGAACAGAGCTTCAGACAAAACCATACCTTAAACCCAGTACTACAATTCTCAAACCTCTCCCTTCCCTTCTTCTTCTTTTCTTTATTTGAGCTGCAGCGTTTTTTCCTCCATTTTTTTGGTAGAAACAAAAGGAGAGTCTTGCGGAAGTGTTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGTGAATCAACTTATATCCTATGCATGTTTTGGTGACTCTATTCTCCATGGATTTTGATTCTTTAAGTCTTCTTCAAACATTCTATTGTAATTCTTCAGAACCTAACAAAAAAAATACGATAATTGTAGAATAATTATAGTATGTGAGTGCTTTGAATTCAGCTCAAAACATAAACAAAGAAAGAGTTAATCCAAAGTGAATCCAAAGAAGAGAAGGAATAGGGATAATCCAAACAAGTGTTGTTAATTAAACTATAACATAATGGTGTCCGCTTCCATAAAATAATAATAATGGAATTATGGGGTAAGATATGCAACGCCACCAAGCGACAATAGGTGAGCAAAATTATGAACGAGTTATGATGTGGTTTCCCCATGAGTTTAAATATTTCAATAACACATACAATGTCGAGGCTGCTCCCCCTCGCCGCCTCGTGTGTGTGCCTTCACTACCCATATGCATATCATATTATATTTTTTATTCCATCTTTTTCCTTACCCATATGTGTATCAGCTCAACATTTGCATATCTAATTCTCCTATGCGTTGGATTCCGAGTATTAAAATCATTCAAGTTTCGAAGCCATTACAACTCATTATTGTGTCAGCCTATTATGGGTACAAAGATGAAGTGAAAATAAGGTGATTAAAGTAAATTTGCGTACACCATTTAATTTGGTTGGGTAATAATTAGAATCCAAGAAGACAATAATGATGTTCTTGTCTTTCATGTAAAAGGGCTTCAATTGGCATTTATTTCACTTTCATATATCTTTTTTGTTACCCACAATTATTCGTATTTTTTGTAGTCACAACATACTATTTTTCAAACTATATTATTATTGCATTTACTTTTCCTTTTGTATTAAATTAAGCATTTATTTGGGTGTGAATTTAAGAACAAAATAATATATCCATAATCACTCCATTAATTGATTTACATTTAATTATTCATAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTACTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCCACGGTGATTTCTCCTCACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAAGCTGGTCGGCCGCTGCCCATTATTGCCTTTTCTTTTCTTTTCTTTTTTTCTTTTCCCCCCTCATGCGGAATCATCGCTCCACCTTAATCAAAATGTGATTCACTCTCTTTGTTTTATCTTCTTTTCTTCGGCGTTTTAATTTTAGATACACATATAGTCATATTAAAATATATATATATATATAATTATATAGATCCTGTCTAGTCTATAAGGGGGTGCTTTGTTT

mRNA sequence

TTTACATCTATATTTGAGTTAACCTTTTGGATCTTCAATTTTCATCATCCACTTCCGTAGTTTTCTCTCTGTGTTTTTTCTACTTTACCTTTCTCTCTCTCTCCTCTCCCACCTCCTAAAACTGCCTATTTCTTCTTCTTCTTCTTTTTGGTTTGCAAAGCTTCATCAACAGACTTCCATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCCGTACCTGGCCTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAACAGAGCGCCAGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCCCATCTTCTTGAACAGAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGAGTCTTGCGGAAGTGTTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTACTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCCACGGTGATTTCTCCTCACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAAGCTGGTCGGCCGCTGCCCATTATTGCCTTTTCTTTTCTTTTCTTTTTTTCTTTTCCCCCCTCATGCGGAATCATCGCTCCACCTTAATCAAAATGTGATTCACTCTCTTTGTTTTATCTTCTTTTCTTCGGCGTTTTAATTTTAGATACACATATAGTCATATTAAAATATATATATATATATAATTATATAGATCCTGTCTAGTCTATAAGGGGGTGCTTTGTTT

Coding sequence (CDS)

ATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCCGTACCTGGCCTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAACAGAGCGCCAGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCCCATCTTCTTGAACAGAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGAGTCTTGCGGAAGTGTTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTACTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCCACGGTGATTTCTCCTCACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAA

Protein sequence

MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKTRIVV
Homology
[Close]
BLAST of CmaCh04G000390 vs. Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-57
Identity = 127/196 (64.80%), Postives = 153/196 (78.06%), Query Frame = 1 

Query: 6   TNSSRLDLTISVPGLTSFSSSPLPPSA--------VRDLDMNRAP---DEEEWMMGSMEE 65
           T+ S L+LT++VPGL+S  S     +         +RDLD+N+     +EEE+ MGS+EE
Sbjct: 5   TSPSGLELTMAVPGLSSSGSEGAGCNNNNAGGGCNMRDLDINQPASGGEEEEFPMGSVEE 64

Query: 66  DEENNS--GSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQ 125
           DEE     G H  KKLRL+KEQS LLE+SFR NHTL PKQKE+LA  LKL+PRQVEVWFQ
Sbjct: 65  DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQ 124

Query: 126 NRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPA 185
           NRRAR+KLKQTEMECEYLKR FG LTE+N++LQ+EVEELRAM+VAPPTV+SPH+ +PLPA
Sbjct: 125 NRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPA 184

Query: 186 SNLTMCPRCERVTTTT 189
           S LTMCPRCER+T  T
Sbjct: 185 SALTMCPRCERITAAT 200

[Close]
BLAST of CmaCh04G000390 vs. Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-57
Identity = 127/196 (64.80%), Postives = 153/196 (78.06%), Query Frame = 1 

Query: 6   TNSSRLDLTISVPGLTSFSSSPLPPSA--------VRDLDMNRAP---DEEEWMMGSMEE 65
           T+ S L+LT++VPGL+S  S     +         +RDLD+N+     +EEE+ MGS+EE
Sbjct: 5   TSPSGLELTMAVPGLSSSGSEGAGCNNNNAGGGCNMRDLDINQPASGGEEEEFPMGSVEE 64

Query: 66  DEENNS--GSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQ 125
           DEE     G H  KKLRL+KEQS LLE+SFR NHTL PKQKE+LA  LKL+PRQVEVWFQ
Sbjct: 65  DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQ 124

Query: 126 NRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPA 185
           NRRAR+KLKQTEMECEYLKR FG LTE+N++LQ+EVEELRAM+VAPPTV+SPH+ +PLPA
Sbjct: 125 NRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPA 184

Query: 186 SNLTMCPRCERVTTTT 189
           S LTMCPRCER+T  T
Sbjct: 185 SALTMCPRCERITAAT 200

[Close]
BLAST of CmaCh04G000390 vs. Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.7e-55
Identity = 130/201 (64.68%), Postives = 144/201 (71.64%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAV---RD---LDMNRAPDEEEWMMGSMEE 60
           MA+LP NSS LDLTISVPG   FSSSPL        RD   LDMNR P  E+   G  EE
Sbjct: 74  MAILPENSSNLDLTISVPG---FSSSPLSDEGSGGGRDQLRLDMNRLPSSED---GDDEE 133

Query: 61  DEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNR 120
              ++  + PRKKLRLT+EQS LLE SFRQNHTLNPKQKE LA+ L L+PRQ+EVWFQNR
Sbjct: 134 FSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNR 193

Query: 121 RARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASN 180
           RARSKLKQTEMECEYLKRWFG LTE+N +L +EVEELRAMKV P TV S        AS+
Sbjct: 194 RARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASS 253

Query: 181 LTMCPRCERVTTTTLDKTRIV 196
           LTMCPRCERVT        +V
Sbjct: 254 LTMCPRCERVTPAASPSRAVV 260

[Close]
BLAST of CmaCh04G000390 vs. Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-48
Identity = 118/192 (61.46%), Postives = 136/192 (70.83%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPL--PPSAVRDLDMNRAP---DEEEWMMGSMEE- 60
           MA+ P NSS LDLTIS+P   SFS SP       +RD D+N+ P   ++ EWM+G+    
Sbjct: 1   MALSP-NSSSLDLTISIP---SFSPSPSLGDHHGMRDFDINQTPKTEEDREWMIGATPHV 60

Query: 61  -DEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQN 120
            ++++NSG   RKKLRLTKEQSHLLE+SF QNHTL PKQK+ LA  LKL  RQVEVWFQN
Sbjct: 61  NEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQN 120

Query: 121 RRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPAS 180
           RRARSKLK TEMECEYLKRWFG L EQN++LQ EVEELRA+K             P   S
Sbjct: 121 RRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTS 175

Query: 181 NLTMCPRCERVT 186
            LTMCPRCERVT
Sbjct: 181 ALTMCPRCERVT 175

[Close]
BLAST of CmaCh04G000390 vs. Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-34
Identity = 88/173 (50.87%), Postives = 115/173 (66.47%), Query Frame = 1 

Query: 22  SFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQS 81
           S SS  +  +A   +   RA + +   + S     +++     RKKLRLTKEQS LLE  
Sbjct: 83  SVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGRDDDDDGSTRKKLRLTKEQSALLEDR 142

Query: 82  FRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQN 141
           FR++ TLNPKQK +LA+ L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR    LTE+N
Sbjct: 143 FREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEEN 202

Query: 142 KKLQKEVEELRAMKVAPPTVIS----PHSCEP------LPASNLTMCPRCERV 185
           ++LQ+E++ELRA+K APP   S    P    P      LPA+ LT+CP CERV
Sbjct: 203 RRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERV 255

[Close]
BLAST of CmaCh04G000390 vs. TrEMBL
Match: A0A0A0KJE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065660 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.0e-89
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT++SRLDL+ISVPG  SFSS+ LPPS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTSTSRLDLSISVPGFNSFSSA-LPPSVGRDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKE+LAEVLKLKPRQ+EVWFQNRRARS
Sbjct: 61  NGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHS EPLPASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRIVV
Sbjct: 181 PRCERVTTTTLDKTRIVV 197

[Close]
BLAST of CmaCh04G000390 vs. TrEMBL
Match: A0A061EF99_THECC (Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.8e-74
Identity = 154/201 (76.62%), Postives = 171/201 (85.07%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSA-------VRDLDMNRAPD---EEEWMMG 60
           MAVLPT SS L+LTISVPG   FSSSP  PS+       VRDLD+N+ P    E+EW+  
Sbjct: 1   MAVLPTGSSNLELTISVPG---FSSSPSLPSSGDQGGCTVRDLDINQVPSGGAEDEWITA 60

Query: 61  SMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVW 120
           SME++EE+ +G+ PRKKLRLTKEQS LLE+SFRQNHTLNPKQKE+LA  LKL+PRQVEVW
Sbjct: 61  SMEDEEESCNGAPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVW 120

Query: 121 FQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPL 180
           FQNRRARSKLKQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKV PPTVISPHSCEPL
Sbjct: 121 FQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL 180

Query: 181 PASNLTMCPRCERVTTTTLDK 192
           PAS LTMCPRCERVTTT LDK
Sbjct: 181 PASTLTMCPRCERVTTTALDK 198

[Close]
BLAST of CmaCh04G000390 vs. TrEMBL
Match: A0A0S3R2Y8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G269700 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 149/189 (78.84%), Postives = 169/189 (89.42%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSP--LPPSAVRDLDMNRAPDEEEWMMGSMEEDEEN 60
           MAVLP+ SS L+LTISVPG   F+SSP  LP S+V++LD+N+ P EE+WM  +ME++EE+
Sbjct: 1   MAVLPSASSTLELTISVPG---FASSPTLLPSSSVKELDINQVPVEEDWMASNMEDEEES 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARS 120
           ++G  PRKKLRLTKEQS LLE+SFRQNHTLNPKQKESLA  LKL+PRQVEVWFQNRRARS
Sbjct: 61  SNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKV PPTVISPHSCEPLPAS LTMC
Sbjct: 121 KLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMC 180

Query: 181 PRCERVTTT 188
           PRCERVTTT
Sbjct: 181 PRCERVTTT 186

[Close]
BLAST of CmaCh04G000390 vs. TrEMBL
Match: A0A0B0MRC6_GOSAR (Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 9.8e-73
Identity = 152/196 (77.55%), Postives = 170/196 (86.73%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSA-------VRDLDMNRAPDEEEWMMGSME 60
           MAVLPT SS L+LTISVPG   F+SSP  PS+       VRDLD+N+ P E+EW+  SME
Sbjct: 1   MAVLPTGSSHLELTISVPG---FASSPSFPSSGDQGGCTVRDLDINQVPAEDEWITASME 60

Query: 61  EDEEN-NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQ 120
           ++EE+ N+G+ PRKKLRLTKEQS LLE+SFR NHTLNPKQKE+LA  LKL+PRQVEVWFQ
Sbjct: 61  DEEESCNNGAPPRKKLRLTKEQSRLLEESFRLNHTLNPKQKEALALQLKLRPRQVEVWFQ 120

Query: 121 NRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPA 180
           NRRARSKLKQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKVAPPTVISPHSCEPLPA
Sbjct: 121 NRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVAPPTVISPHSCEPLPA 180

Query: 181 SNLTMCPRCERVTTTT 189
           S LTMCPRCERVTTTT
Sbjct: 181 STLTMCPRCERVTTTT 193

[Close]
BLAST of CmaCh04G000390 vs. TrEMBL
Match: I1ND77_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G014400 PE=4 SV=2)

HSP 1 Score: 281.2 bits (718), Expect = 9.8e-73
Identity = 147/189 (77.78%), Postives = 169/189 (89.42%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSP--LPPSAVRDLDMNRAPDEEEWMMGSMEEDEEN 60
           MAVLP++SS L+LTISVPG   F+SSP  LP S+V++LD+N+ P EE+WM  +ME++EE 
Sbjct: 1   MAVLPSSSSNLELTISVPG---FASSPVLLPLSSVKELDINQVPLEEDWMASNMEDEEEG 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARS 120
           ++G  PRKKLRLTKEQS LLE+SFRQNHTLNPKQKESLA  LKL+PRQVEVWFQNRRARS
Sbjct: 61  SNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKV PPTVISPHSCEPLPAS L+MC
Sbjct: 121 KLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMC 180

Query: 181 PRCERVTTT 188
           PRCERVT+T
Sbjct: 181 PRCERVTST 186

[Close]
BLAST of CmaCh04G000390 vs. TAIR10
Match: AT2G01430.1 (AT2G01430.1 homeobox-leucine zipper protein 17)

HSP 1 Score: 214.9 bits (546), Expect = 4.3e-56
Identity = 130/201 (64.68%), Postives = 144/201 (71.64%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAV---RD---LDMNRAPDEEEWMMGSMEE 60
           MA+LP NSS LDLTISVPG   FSSSPL        RD   LDMNR P  E+   G  EE
Sbjct: 74  MAILPENSSNLDLTISVPG---FSSSPLSDEGSGGGRDQLRLDMNRLPSSED---GDDEE 133

Query: 61  DEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNR 120
              ++  + PRKKLRLT+EQS LLE SFRQNHTLNPKQKE LA+ L L+PRQ+EVWFQNR
Sbjct: 134 FSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNR 193

Query: 121 RARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASN 180
           RARSKLKQTEMECEYLKRWFG LTE+N +L +EVEELRAMKV P TV S        AS+
Sbjct: 194 RARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASS 253

Query: 181 LTMCPRCERVTTTTLDKTRIV 196
           LTMCPRCERVT        +V
Sbjct: 254 LTMCPRCERVTPAASPSRAVV 260

[Close]
BLAST of CmaCh04G000390 vs. TAIR10
Match: AT1G70920.1 (AT1G70920.1 homeobox-leucine zipper protein 18)

HSP 1 Score: 194.1 bits (492), Expect = 7.9e-50
Identity = 118/192 (61.46%), Postives = 136/192 (70.83%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPL--PPSAVRDLDMNRAP---DEEEWMMGSMEE- 60
           MA+ P NSS LDLTIS+P   SFS SP       +RD D+N+ P   ++ EWM+G+    
Sbjct: 1   MALSP-NSSSLDLTISIP---SFSPSPSLGDHHGMRDFDINQTPKTEEDREWMIGATPHV 60

Query: 61  -DEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQN 120
            ++++NSG   RKKLRLTKEQSHLLE+SF QNHTL PKQK+ LA  LKL  RQVEVWFQN
Sbjct: 61  NEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQN 120

Query: 121 RRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPAS 180
           RRARSKLK TEMECEYLKRWFG L EQN++LQ EVEELRA+K             P   S
Sbjct: 121 RRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTS 175

Query: 181 NLTMCPRCERVT 186
            LTMCPRCERVT
Sbjct: 181 ALTMCPRCERVT 175

[Close]
BLAST of CmaCh04G000390 vs. TAIR10
Match: AT5G06710.1 (AT5G06710.1 homeobox from Arabidopsis thaliana)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-35
Identity = 90/182 (49.45%), Postives = 118/182 (64.84%), Query Frame = 1 

Query: 6   TNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPR 65
           T+S +LD  I   G    S+        RD+D     DE E        ++ ++     R
Sbjct: 142 TSSFQLDFGIKSYGYERRSNK-------RDID-----DEVERSASRASNEDNDDENGSTR 201

Query: 66  KKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEM 125
           KKLRL+K+QS  LE SF+++ TLNPKQK +LA+ L L+PRQVEVWFQNRRAR+KLKQTE+
Sbjct: 202 KKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 261

Query: 126 ECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT 185
           +CEYLKR    LTE+N++LQKEV+ELR +K + P  +       LPA+ LTMCP CERV 
Sbjct: 262 DCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTLTMCPSCERVA 305

Query: 186 TT 188
           T+
Sbjct: 322 TS 305

[Close]
BLAST of CmaCh04G000390 vs. TAIR10
Match: AT2G22800.1 (AT2G22800.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 1 

Query: 14  TISVPGLTSFSSSPLPPSAVRDLDMNR-APDEEEWMMGSMEEDEENNSGSHPRKKLRLTK 73
           T S  G++SFSS  +     R+ D    +P+EEE     + +  E+  G   RKKLRLTK
Sbjct: 63  TSSHSGVSSFSSGRV---VKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTK 122

Query: 74  EQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKR 133
           +QS LLE+SF+ + TLNPKQK+ LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+
Sbjct: 123 QQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKK 182

Query: 134 WFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERV 185
               L ++N +LQKE++EL+ +K+  P  +       +PAS LT CP CER+
Sbjct: 183 CCETLADENIRLQKEIQELKTLKLTQPFYMH------MPASTLTKCPSCERI 225

[Close]
BLAST of CmaCh04G000390 vs. TAIR10
Match: AT2G44910.1 (AT2G44910.1 homeobox-leucine zipper protein 4)

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-34
Identity = 84/167 (50.30%), Postives = 114/167 (68.26%), Query Frame = 1 

Query: 34  RDLDMNRAPDEEEWMMGSME--------EDEENNSGSHPRKKLRLTKEQSHLLEQSFRQN 93
           RDL + R  DE E    S          +DE+  +G   RKKLRL+K+Q+ +LE++F+++
Sbjct: 123 RDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEH 182

Query: 94  HTLNPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQ 153
            TLNPKQK +LA+ L L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N++LQ
Sbjct: 183 STLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQ 242

Query: 154 KEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKT 193
           KEV ELRA+K++P   +        P + LTMCP CERV+++    T
Sbjct: 243 KEVSELRALKLSPHLYM-----HMTPPTTLTMCPSCERVSSSAATVT 284

[Close]
BLAST of CmaCh04G000390 vs. NCBI nr
Match: gi|778698284|ref|XP_011654500.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 2.8e-89
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT++SRLDL+ISVPG  SFSS+ LPPS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTSTSRLDLSISVPGFNSFSSA-LPPSVGRDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKE+LAEVLKLKPRQ+EVWFQNRRARS
Sbjct: 61  NGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHS EPLPASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRIVV
Sbjct: 181 PRCERVTTTTLDKTRIVV 197

[Close]
BLAST of CmaCh04G000390 vs. NCBI nr
Match: gi|778698287|ref|XP_011654501.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 3.1e-88
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT++SRLDL+ISVPG  SFSS+ LPPS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTSTSRLDLSISVPGFNSFSSA-LPPSG-RDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKE+LAEVLKLKPRQ+EVWFQNRRARS
Sbjct: 61  NGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHS EPLPASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRIVV
Sbjct: 181 PRCERVTTTTLDKTRIVV 196

[Close]
BLAST of CmaCh04G000390 vs. NCBI nr
Match: gi|659109472|ref|XP_008454736.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis melo])

HSP 1 Score: 332.4 bits (851), Expect = 5.3e-88
Identity = 175/198 (88.38%), Postives = 185/198 (93.43%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT +SRLDL+ISVPG  SFSSS L PS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTGTSRLDLSISVPGFNSFSSS-LTPSVGRDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKE+LAEVL LKPRQVEVWFQNRRARS
Sbjct: 61  NGNNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLNLKPRQVEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPL ASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLLASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRI+V
Sbjct: 181 PRCERVTTTTLDKTRIIV 197

[Close]
BLAST of CmaCh04G000390 vs. NCBI nr
Match: gi|659109474|ref|XP_008454737.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis melo])

HSP 1 Score: 328.9 bits (842), Expect = 5.9e-87
Identity = 175/198 (88.38%), Postives = 185/198 (93.43%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEE--N 60
           MA+LPT +SRLDL+ISVPG  SFSSS L PS  RDLDMN+APDEEEWMMG+MEEDEE  N
Sbjct: 1   MAILPTGTSRLDLSISVPGFNSFSSS-LTPSG-RDLDMNKAPDEEEWMMGTMEEDEEINN 60

Query: 61  NSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARS 120
           N  ++PRKKLRLTKEQSHLLEQSFRQNHTLNPKQKE+LAEVL LKPRQVEVWFQNRRARS
Sbjct: 61  NGNNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLNLKPRQVEVWFQNRRARS 120

Query: 121 KLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMC 180
           KLKQTEMECEYLKRWFGLLTEQNK+LQKEVEELRAMKVAPPTVISPHSCEPL ASNLTMC
Sbjct: 121 KLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLLASNLTMC 180

Query: 181 PRCERVTTTTLDKTRIVV 197
           PRCERVTTTTLDKTRI+V
Sbjct: 181 PRCERVTTTTLDKTRIIV 196

[Close]
BLAST of CmaCh04G000390 vs. NCBI nr
Match: gi|590696318|ref|XP_007045132.1| (Homeobox-leucine zipper protein HOX3 [Theobroma cacao])

HSP 1 Score: 284.6 bits (727), Expect = 1.3e-73
Identity = 154/201 (76.62%), Postives = 171/201 (85.07%), Query Frame = 1 

Query: 1   MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSA-------VRDLDMNRAPD---EEEWMMG 60
           MAVLPT SS L+LTISVPG   FSSSP  PS+       VRDLD+N+ P    E+EW+  
Sbjct: 1   MAVLPTGSSNLELTISVPG---FSSSPSLPSSGDQGGCTVRDLDINQVPSGGAEDEWITA 60

Query: 61  SMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVW 120
           SME++EE+ +G+ PRKKLRLTKEQS LLE+SFRQNHTLNPKQKE+LA  LKL+PRQVEVW
Sbjct: 61  SMEDEEESCNGAPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVW 120

Query: 121 FQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPL 180
           FQNRRARSKLKQTEMECEYLKRWFG LTEQN++LQ+EVEELRAMKV PPTVISPHSCEPL
Sbjct: 121 FQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL 180

Query: 181 PASNLTMCPRCERVTTTTLDK 192
           PAS LTMCPRCERVTTT LDK
Sbjct: 181 PASTLTMCPRCERVTTTALDK 198

The following BLAST results are available for this feature:
BLAST of CmaCh04G000390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HOX3_ORYSJ1.3e-5764.80Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=... [more]
HOX3_ORYSI1.3e-5764.80Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 ... [more]
ATB17_ARATH7.7e-5564.68Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 ... [more]
ATHBX_ARATH1.4e-4861.46Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV... [more]
HOX19_ORYSJ2.6e-3450.87Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 P... [more]
BLAST of CmaCh04G000390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJE2_CUCSA2.0e-8988.89Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065660 PE=4 SV=1[more]
A0A061EF99_THECC8.8e-7476.62Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1[more]
A0A0S3R2Y8_PHAAN1.2e-7378.84Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G269700 PE=... [more]
A0A0B0MRC6_GOSAR9.8e-7377.55Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1[more]
I1ND77_SOYBN9.8e-7377.78Uncharacterized protein OS=Glycine max GN=GLYMA_20G014400 PE=4 SV=2[more]
BLAST of CmaCh04G000390 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01430.14.3e-5664.68 homeobox-leucine zipper protein 17[more]
AT1G70920.17.9e-5061.46 homeobox-leucine zipper protein 18[more]
AT5G06710.12.5e-3549.45 homeobox from Arabidopsis thaliana[more]
AT2G22800.11.6e-3449.42 Homeobox-leucine zipper protein family[more]
AT2G44910.12.1e-3450.30 homeobox-leucine zipper protein 4[more]
BLAST of CmaCh04G000390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778698284|ref|XP_011654500.1|2.8e-8988.89PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis sativus... [more]
gi|778698287|ref|XP_011654501.1|3.1e-8888.89PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis sativus... [more]
gi|659109472|ref|XP_008454736.1|5.3e-8888.38PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis melo][more]
gi|659109474|ref|XP_008454737.1|5.9e-8788.38PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis melo][more]
gi|590696318|ref|XP_007045132.1|1.3e-7376.62Homeobox-leucine zipper protein HOX3 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR003106Leu_zip_homeo
IPR009057Homeobox-like_sf
IPR017970Homeobox_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0044212 transcription regulatory region DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G000390.1CmaCh04G000390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 65..119
score: 1.9
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 63..125
score: 3.7
IPR001356Homeobox domainPROFILEPS50071HOMEOBOX_2coord: 61..121
score: 17
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 121..155
score: 1.
IPR003106Leucine zipper, homeobox-associatedSMARTSM00340halzcoord: 121..164
score: 3.2
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 46..119
score: 5.4
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 51..122
score: 8.55
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 96..119
scor
NoneNo IPR availableunknownCoilCoilcoord: 134..157
scor
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 29..196
score: 3.4
NoneNo IPR availablePANTHERPTHR24326:SF114HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17-RELATEDcoord: 29..196
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G000390Cla003908Watermelon (97103) v1cmawmB713
CmaCh04G000390Csa5G065660Cucumber (Chinese Long) v2cmacuB743
CmaCh04G000390MELO3C005327Melon (DHL92) v3.5.1cmameB639
CmaCh04G000390ClCG01G006050Watermelon (Charleston Gray)cmawcgB636
CmaCh04G000390ClCG07G006750Watermelon (Charleston Gray)cmawcgB674
CmaCh04G000390CSPI05G01460Wild cucumber (PI 183967)cmacpiB752
CmaCh04G000390CmoCh04G000370Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G000390Lsi04G011650Bottle gourd (USVL1VR-Ls)cmalsiB680
CmaCh04G000390Cp4.1LG01g06250Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G000390MELO3C034475.2Melon (DHL92) v3.6.1cmamedB746
CmaCh04G000390CsaV3_5G015440Cucumber (Chinese Long) v3cmacucB0879
CmaCh04G000390Cla97C01G006340Watermelon (97103) v2cmawmbB709
CmaCh04G000390Cla97C07G134460Watermelon (97103) v2cmawmbB781
CmaCh04G000390Bhi07G000238Wax gourdcmawgoB0890
CmaCh04G000390Bhi12G000756Wax gourdcmawgoB0830
CmaCh04G000390CsGy5G011610Cucumber (Gy14) v2cgybcmaB669
CmaCh04G000390Carg21993Silver-seed gourdcarcmaB0242
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G000390Cucumber (Chinese Long) v3cmacucB0876
CmaCh04G000390Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G000390Cucurbita maxima (Rimu)cmacmaB539
CmaCh04G000390Cucurbita moschata (Rifu)cmacmoB730
CmaCh04G000390Melon (DHL92) v3.5.1cmameB648
CmaCh04G000390Melon (DHL92) v3.5.1cmameB659
CmaCh04G000390Cucurbita pepo (Zucchini)cmacpeB722
CmaCh04G000390Cucumber (Gy14) v2cgybcmaB664
CmaCh04G000390Melon (DHL92) v3.6.1cmamedB732
CmaCh04G000390Silver-seed gourdcarcmaB0949