Lsi04G011650 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G011650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	HB transcription factor
Location	chr04 : 16901349 .. 16907446 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTACTGTGACGGGTTTTTGTTGCAGTAGCGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAGGAATGGATGATGGGAAGTATGGAGGAAGATGAAGAAAACAACAATGGAAGCAATAATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTTAGACAAAACCATACCTTAAACCCAGTACATTTCTTAAAATTCCCTCTCTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTCATTTTTTTCATTTCATTTTATTTATTTATTTTATTATATAATTTTTTTTCTTTTTTAGAAACAGAAGGAGACTTTGGCAGAAATGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGTGCGCTATTAATTTTCAAGTTATTATGTTTAATAATTCTTTTTTCTTTCTACTAAGTTTTTTTTTTCCTTCCTTTTCTTTGTTTTTCTATGGATTTTTATTTCGAGGGCTTAATATGTTCACATGCATAATTTGTTTTGAAAGATAACTATTTGATTTTTTATTTATGATTAATGAACTTTTTTTTATAAAATTTGGTTTGGTTAAAATAAAGAAATTAATAGATGGAAGTAGTGTTTATAAGCTTAATTTTTAAAAATCAATTGGTTAAACAGACGTAAAACCCTTGTTTCACAAATCATTTCTAAAGAGTTTTGTATAAAAAAGAATGGGATCAAGAATAGTTAAACATTTTACGTTTTTTTCATATGATTTTTTTCTATTTTATGAAATAATGTATGAATTTTTTCTTTGTTATTCTATCTTAGTTCCTAACCCTTCAAACATCCTATGACATTTTCTTGAATTTTCACTAAAGATTTTTATAAGCTAAAATAGTTAGCCATATATGACTTTTATCGATTGAGATGATTTAATTGATAGATATTTACAGTGGATAAGTGCTTTGAAACCCAACATATACTTAGTAGGTTACGTATCTTTACTTTCATTTGAGTGTATACACTCAAATCAATTGAATTAGGTTAAAGTTGGCTATTTAATTTTTTTTATTAATGTCACAAAATCTTAAAAAAAACAAAAAAACATTAGAAAATTTAAAAACTAAAAGTATAAAGTAATATCAAATATGGAAATAAATGAAATGTCTTAGCTTGTAGAGTTTTCCCCATATTGAAAATCAATAAAGAAAAGAAAATTTTTGATTAAAGGAAGAATAGAGATATCCAAACTAAATAAACAAGGTTAAAACTATAGCATTATTTTGTCCCATTTCTAGAAAATAAAAAAAATTATAAAATAATAATAGTGGAATTATGGGCTAAGATATGCAATGCCACCAAGAGACAATAGGTGAACAAAATTATGAACAAGTAATCATGTGGTTGCCTCCCTATGACTTTAGATATGTCAATAACACATTGTCTAGGGTGCTTCCAATCGCCTCGTGTGCCTCTACATTTTCCATATCATATTAACATTAAAGTAAACTTAGCTCTTTTTTTTTTAATTATATCTTTTCCCTAAGCCATGCATCATAATAATAATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGGCTTCATTTTTTGCTTTTATTTGACTTTATTTTTTTTATATTAACTTGCCTATATTGAGATGAAGATCTAAACTTACTATTAAAAAAACATTGGATTTCATCTCAAAATATTTAAGATTTGTGAGATCTTCTTTCTTAAAATACCGGTTTGAAAAGAAAAAAAAAAACTTTGCTTTTTATAAAGATTTGTGAGGTCTCGTCCTCACCATGTCCCCTTTAGATGATACTTTTTTAGGTTTTTTTTTTTTTTTTTGGACCAAATACTTACTGGAATTTTACGGCTCTGATATCATATTAGAGAAACATGGAGGTTTCATCTCAATGTCTAGAAAAATATATATGGACTATTCTTTCATTACCCATTAATTTTGAGATAGTACCATATATGTTGATCTAATAGTTATGATTTCTTAACCAAAGTAAAACTGTTTTAACCACTTAAGTAGGTTTAAGTTGACATGTTTGACTTTTGTTTGAATATTATGATTTCAAAATTTTCAACTAAGTTTAGGGTTTAGATCATCAAACCTAAGCAGAAGCCTTTCTTGATATTGTAACTCTTTTTTTATTTTTTATTTTTTATTTTTCTTATTTTCATTAACTTTCATCTCCAAAACTTAATTCGTTTTATCGACACATGTTTTTCCTCTAAAGAAATCAAAGATGTTTTGAAAAAATTTAACCCAAAAGTTAGGATTTGGTCCAAATTGAAAATTTGCTCAAATTACTATAAAGACCTACTTTTTAATTTCGATCTAATTATTTTCATTATTATATTTTAGAATTATATTTTAAAATTCGATTGGATTTCAATGGGTAAAAGACTTGTTCTTGAAAACTTTTTTTCTTTAACCTTTTTGCTTAATTCTCCAAAAGATTTATCATCAACATAAATTATTTTTCATAAAATTAAAATAATAAAAATAAGAAATTAGTTATTGGGTATTATTATATATAGTGTGTGAGATTGCTTTATGTAATTTTCATTTTGAATTTTGAATATTAGAATGTTTACATGGAGGTTTTCAAACTACATTTTATGAATAGTTTGAAGCTGTTTGAACTAATTATTATGTCAGTTATTATGGGTACAAAAACAAGTAAAAATCAGTTAATAAAAGTTAATGGGTGAAGCAAAACATTGCATGAAAAAGGTAAATTTATATACCATTGAATTTGCTTTGATAATAATTAGTATCCAAGAAGACAATAATGATGTTCTTGTCTTTCATGTAAAAAGGCTTCAAATTGCATTTATTTCACTTTCACACCTTTTTTTCCCTTGTCCTTCTTTTTTGTTAGGCACAATTATTGACATTTTTTTTGTGTAGTCAGAACATATATTTGATTTTGATAATATACTCCATATTTTTCAAAGTATATATATTATTGCATTTACTTTTTCTAATGTATTAATTAAGCATTTATTTGGGTATTTGAGTTCAAAAGAAACTATATATTTAAGAAAATAAATCAATATTATATCAACCATGATGAACTAGTTGATTAAACTTTCCATAGAAGATCTAAGTTTAAATTAACTACCGCTTTTATATTCTTTGGTTAAACTTGGTTTATTTGGTTTTTTTAGTTCTAACATTTTTATTATAATTTGAATAGTTTGTTAAGTCTCTGAAATATCCCTAGAGTTTCTATAAGCTTTTTCATTTTCTTAAATAATAATATTTTTTTCTTGAAATTTAAGAAAATATGATCATCTTTTGTTGTAAAGTTGAACCAACTTATGACATATTTAAGAGTGGTTGACTTTGAAAGGATTAAAATCATTTTTATAATGTTTAAAACAATTTTAAAACATATTTTTAAGGAAATTTTTTAAAAATAGAAAAATAAAGGAAACTATTTATAGAAAATAACAAAATTTTTAGATAGTTGTAATAGATGCTGATAGAAGTCTATCAAGGTCTATCAGTGATAAAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAAGTCTATCAATGTCTATCAATATTTTTGTTTACTATTTTTTGTAAATAGTTTGACATTTTTTTTATATGTGAAAATTTTCCTATTTTTAATCATTCAAAATTAATTTATAAATAAAATCAAAGTGTGTTTTGAAGTAATTAATATGACAAAAGTGATTTTAACTATTTTAAAAGATTACTCAGTTGAAATTGTGTCGTGTTGAGTGTACATACATGTTTAGATACCCTGATTCTTAAATTAAAAATGAAACTCTAAAATAATAGGATTATTATTGCATTAACTTTTTCTTTTGTATTAAATAAGTATTTATTTGGGTATGAGTTAAAAAGAAAGCCTACATGTACGGAAATCAACCAATAATATATCAACGATGACACTCAAATAATTGATTTAAATTTTTCCATAGAAGATTTAAGTTAAAATTAAGCACCACTTTAATTCTTGTGGTTAAATATAGTTTCACTTTGGTTGTCTTTGGCAGTCTTATCACTTTTATTATTATTTTAATAGTTTAGTTAAATCTCTAAAATGTCTGTAGAGTTTCTATTACACTACCATTTTTCTTAAAATAACTCATTTTCTTGGAAGGCAATAAAACTAGCTGAATTTTAGTACGAAGGAACTTATTTTATTACACAAAGTATTTGTAAAGGTTCAATTTATTACTTAGAGTCTATTTAGAGAACGACAACGTTAAACACTTTTTTAAGTATTTAGAAAGTAATCCGAAACGTATCGTATCATTTTAGGATTTGATTTATATATTTCGTGTGGACATTTTCAAAATCTTTATTCCTCAAATTAAAAATTTATTTTTCTTCACCCATCGTGTTTAATAAGAAAAGAAAAAAAAATTGTTAATGCATTCTATAAAAATAGATCCATTTCAAAAGATTTAACAAAACTAGAAAATCACAATAACTAAATTGAAATTAAACTCATATTATCAATGATTAAAAAAAGGTACTTTTCGAACTTTAAAAACGTAGAGATCGAATATTCCTTTCCTAAAAAATCTAAGCGCTAGAAATTAAGTTATATTCGGAAAACTTAAATATCAAATACATCTACTTTTAATATTCGGACACTGAGAGCGTAATTTTTCTTTTAAAAAAAAAAACCATCAAAACAACACGATAAAATTGAATTATGGACAAAATTTTAATCCCTTAAGTAAATAAGTTGAAATCAAAGAACTAAATTAAAATAAGAGGTTTATTGTGAATTTGTAGGAGCAAATTAAAGCAAACGGAGATGGAATGTGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAACAAGAGACTGCAGAAGGAAGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGTGAGCCGTTGCCGGCGTCGAATCTGACAATGTGTCCACGCTGTGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGGATTGTCGTTTAAGTTGGTCGGCCGCTGCTCCCCCCTTATTTTCACTCATGCGGAATCATCACTCCATCTTAATCAAAATCTGCCTCATTCTCTCTTTTGTTTTAATTTTAGACATATGTCCTATATTATTATATACATATATCATATAATTTAAAGAGGGGTGTTTGGTTTATGTCTTTCTTTGAAATTGGGTTGTGTTTATACTCTTATAAACTTTCTCCATATTTGAAATTTCTGTTTTTAGTTTTGCTTTCCTCAATTTTTAAAATACCCAGGTGCCTCCATCATTCTTCATATATGAAAGGTTTGTTTTAGTT

mRNA sequence

ATGTCGAAACAGAAGGAGACTTTGGCAGAAATGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAATTAAAGCAAACGGAGATGGAATGTGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAACAAGAGACTGCAGAAGGAAGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGTGAGCCGTTGCCGGCGTCGAATCTGACAATGTGTCCACGCTGTGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGGATTGTCGTTTAAGTTGGTCGGCCGCTGCTCCCCCCTTATTTTCACTCATGCGGAATCATCACTCCATCTTAATCAAAATCTGCCTCATTCTCTCTTTTGTTTTAATTTTAGACATATGTCCTATATTATTATATACATATATCATATAATTTAAAGAGGGGTGTTTGGTTTATGTCTTTCTTTGAAATTGGGTTGTGTTTATACTCTTATAAACTTTCTCCATATTTGAAATTTCTGTTTTTAGTTTTGCTTTCCTCAATTTTTAAAATACCCAGGTGCCTCCATCATTCTTCATATATGAAAGGTTTGTTTTAGTT

Coding sequence (CDS)

ATGTCGAAACAGAAGGAGACTTTGGCAGAAATGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAATTAAAGCAAACGGAGATGGAATGTGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAACAAGAGACTGCAGAAGGAAGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGTGAGCCGTTGCCGGCGTCGAATCTGACAATGTGTCCACGCTGTGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGGATTGTCGTTTAA

Protein sequence

MSKQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV

Homology

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BLAST of Lsi04G011650 vs. Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.2e-38
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA  LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FG LTE+N+RLQ+EVEE
Sbjct: 103 KQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEE 162

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT 98
           LRAM+VAPPTV+SPH+ +PLPAS LTMCPRCER+T
Sbjct: 163 LRAMRVAPPTVLSPHTRQPLPASALTMCPRCERIT 197

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BLAST of Lsi04G011650 vs. Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.2e-38
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA  LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FG LTE+N+RLQ+EVEE
Sbjct: 103 KQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEE 162

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT 98
           LRAM+VAPPTV+SPH+ +PLPAS LTMCPRCER+T
Sbjct: 163 LRAMRVAPPTVLSPHTRQPLPASALTMCPRCERIT 197

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BLAST of Lsi04G011650 vs. Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.6e-32
Identity = 74/105 (70.48%), Postives = 81/105 (77.14%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA+ L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFG LTE+N RL +EVEE
Sbjct: 164 KQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEE 223

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIV 108
           LRAMKV P TV S        AS+LTMCPRCERVT  A     +V
Sbjct: 224 LRAMKVGPTTVNS--------ASSLTMCPRCERVTPAASPSRAVV 260

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BLAST of Lsi04G011650 vs. Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-26
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQK+ LA  LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFG L EQN+RLQ EVEE
Sbjct: 94  KQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEE 153

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT 98
           LRA+K             P   S LTMCPRCERVT
Sbjct: 154 LRALK-------------PSSTSALTMCPRCERVT 175

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BLAST of Lsi04G011650 vs. Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-25
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQK  LA+ L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N+RLQKEV+E
Sbjct: 215 KQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKE 274

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTA 101
           LR +K + P  +       LPA+ LTMCP CERV T+A
Sbjct: 275 LRTLKTSTPFYMQ------LPATTLTMCPSCERVATSA 306

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BLAST of Lsi04G011650 vs. TrEMBL
Match: A0A0A0KJE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065660 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKETLAE+LKLKPRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE
Sbjct: 92  KQKETLAEVLKLKPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 151

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 109
           LRAMKVAPPTVISPHS EPLPASNLTMCPRCERVTTT LDKTRIVV
Sbjct: 152 LRAMKVAPPTVISPHSSEPLPASNLTMCPRCERVTTTTLDKTRIVV 197

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BLAST of Lsi04G011650 vs. TrEMBL
Match: A0A061EF99_THECC (Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-44
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA  LKL+PRQVEVWFQNRRARSKLKQTEMECEYLKRWFG LTEQN+RLQ+EVEE
Sbjct: 98  KQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE 157

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDK 104
           LRAMKV PPTVISPHSCEPLPAS LTMCPRCERVTTTALDK
Sbjct: 158 LRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTTALDK 198

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BLAST of Lsi04G011650 vs. TrEMBL
Match: A0A067FF13_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026325mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-44
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA  LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFG LTEQN+RLQ+EVEE
Sbjct: 113 KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE 172

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDK 104
           LRAMKV PPTVISPHSCEPLPAS L+MCPRCERVTTTA+DK
Sbjct: 173 LRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAIDK 213

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BLAST of Lsi04G011650 vs. TrEMBL
Match: V4TLZ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016477mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-44
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA  LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFG LTEQN+RLQ+EVEE
Sbjct: 113 KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE 172

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDK 104
           LRAMKV PPTVISPHSCEPLPAS L+MCPRCERVTTTA+DK
Sbjct: 173 LRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAIDK 213

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BLAST of Lsi04G011650 vs. TrEMBL
Match: D7T8T6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04870 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-43
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA  LKL+PRQVEVWFQNRRARSKLKQTEMECEYLKRWFG LTEQN+RLQ+EVEE
Sbjct: 97  KQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE 156

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDK 104
           LRAMKVAPPTVISPHSCEPLPAS LTMCPRCERVTTT+L K
Sbjct: 157 LRAMKVAPPTVISPHSCEPLPASTLTMCPRCERVTTTSLGK 197

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BLAST of Lsi04G011650 vs. TAIR10
Match: AT2G01430.1 (AT2G01430.1 homeobox-leucine zipper protein 17)

HSP 1 Score: 137.5 bits (345), Expect = 4.9e-33
Identity = 74/105 (70.48%), Postives = 81/105 (77.14%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA+ L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFG LTE+N RL +EVEE
Sbjct: 164 KQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEE 223

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIV 108
           LRAMKV P TV S        AS+LTMCPRCERVT  A     +V
Sbjct: 224 LRAMKVGPTTVNS--------ASSLTMCPRCERVTPAASPSRAVV 260

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BLAST of Lsi04G011650 vs. TAIR10
Match: AT1G70920.1 (AT1G70920.1 homeobox-leucine zipper protein 18)

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-27
Identity = 66/95 (69.47%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQK+ LA  LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFG L EQN+RLQ EVEE
Sbjct: 94  KQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEE 153

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVT 98
           LRA+K             P   S LTMCPRCERVT
Sbjct: 154 LRALK-------------PSSTSALTMCPRCERVT 175

[Close]

BLAST of Lsi04G011650 vs. TAIR10
Match: AT5G06710.1 (AT5G06710.1 homeobox from Arabidopsis thaliana)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-26
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQK  LA+ L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N+RLQKEV+E
Sbjct: 215 KQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKE 274

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTA 101
           LR +K + P  +       LPA+ LTMCP CERV T+A
Sbjct: 275 LRTLKTSTPFYMQ------LPATTLTMCPSCERVATSA 306

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BLAST of Lsi04G011650 vs. TAIR10
Match: AT2G44910.1 (AT2G44910.1 homeobox-leucine zipper protein 4)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-24
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQK  LA+ L L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N+RLQKEV E
Sbjct: 188 KQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSE 247

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKT 105
           LRA+K++P   +        P + LTMCP CERV+++A   T
Sbjct: 248 LRALKLSPHLYM-----HMTPPTTLTMCPSCERVSSSAATVT 284

[Close]

BLAST of Lsi04G011650 vs. TAIR10
Match: AT4G37790.1 (AT4G37790.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-24
Identity = 57/108 (52.78%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQK+ LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+    LT++N+RLQKE+++
Sbjct: 151 KQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQD 210

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERV-------TTTALDK 104
           L+A+K++ P  +       +PA+ LTMCP CER+        TTA+D+
Sbjct: 211 LKALKLSQPFYMH------MPAATLTMCPSCERLGGGGVGGDTTAVDE 252

[Close]

BLAST of Lsi04G011650 vs. NCBI nr
Match: gi|778698287|ref|XP_011654501.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 6.0e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKETLAE+LKLKPRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE
Sbjct: 91  KQKETLAEVLKLKPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 150

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 109
           LRAMKVAPPTVISPHS EPLPASNLTMCPRCERVTTT LDKTRIVV
Sbjct: 151 LRAMKVAPPTVISPHSSEPLPASNLTMCPRCERVTTTTLDKTRIVV 196

[Close]

BLAST of Lsi04G011650 vs. NCBI nr
Match: gi|778698284|ref|XP_011654500.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 6.0e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKETLAE+LKLKPRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE
Sbjct: 92  KQKETLAEVLKLKPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 151

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 109
           LRAMKVAPPTVISPHS EPLPASNLTMCPRCERVTTT LDKTRIVV
Sbjct: 152 LRAMKVAPPTVISPHSSEPLPASNLTMCPRCERVTTTTLDKTRIVV 197

[Close]

BLAST of Lsi04G011650 vs. NCBI nr
Match: gi|659109474|ref|XP_008454737.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKETLAE+L LKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE
Sbjct: 91  KQKETLAEVLNLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 150

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 109
           LRAMKVAPPTVISPHSCEPL ASNLTMCPRCERVTTT LDKTRI+V
Sbjct: 151 LRAMKVAPPTVISPHSCEPLLASNLTMCPRCERVTTTTLDKTRIIV 196

[Close]

BLAST of Lsi04G011650 vs. NCBI nr
Match: gi|659109472|ref|XP_008454736.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKETLAE+L LKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE
Sbjct: 92  KQKETLAEVLNLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 151

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 109
           LRAMKVAPPTVISPHSCEPL ASNLTMCPRCERVTTT LDKTRI+V
Sbjct: 152 LRAMKVAPPTVISPHSCEPLLASNLTMCPRCERVTTTTLDKTRIIV 197

[Close]

BLAST of Lsi04G011650 vs. NCBI nr
Match: gi|590696318|ref|XP_007045132.1| (Homeobox-leucine zipper protein HOX3 [Theobroma cacao])

HSP 1 Score: 185.7 bits (470), Expect = 4.4e-44
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 3   KQKETLAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEE 62
           KQKE LA  LKL+PRQVEVWFQNRRARSKLKQTEMECEYLKRWFG LTEQN+RLQ+EVEE
Sbjct: 98  KQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE 157

Query: 63  LRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDK 104
           LRAMKV PPTVISPHSCEPLPAS LTMCPRCERVTTTALDK
Sbjct: 158 LRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTTALDK 198

The following BLAST results are available for this feature:

BLAST of Lsi04G011650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HOX3_ORYSI	6.2e-38	82.11	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 ...	[more]
HOX3_ORYSJ	6.2e-38	82.11	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=...	[more]
ATB17_ARATH	8.6e-32	70.48	Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 ...	[more]
ATHBX_ARATH	2.4e-26	69.47	Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV...	[more]
HAT14_ARATH	2.1e-25	63.27	Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3	[more]

BLAST of Lsi04G011650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJE2_CUCSA	4.1e-49	96.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065660 PE=4 SV=1	[more]
A0A061EF99_THECC	3.1e-44	91.09	Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1	[more]
A0A067FF13_CITSI	6.9e-44	90.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026325mg PE=4 SV=1	[more]
V4TLZ8_9ROSI	6.9e-44	90.10	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016477mg PE=4 SV=1	[more]
D7T8T6_VITVI	1.5e-43	90.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04870 PE=4 SV=...	[more]

BLAST of Lsi04G011650 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01430.1	4.9e-33	70.48	homeobox-leucine zipper protein 17	[more]
AT1G70920.1	1.4e-27	69.47	homeobox-leucine zipper protein 18	[more]
AT5G06710.1	1.2e-26	63.27	homeobox from Arabidopsis thaliana	[more]
AT2G44910.1	1.4e-24	58.82	homeobox-leucine zipper protein 4	[more]
AT4G37790.1	2.4e-24	52.78	Homeobox-leucine zipper protein family	[more]

BLAST of Lsi04G011650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698287\|ref\|XP_011654501.1\|	6.0e-49	96.23	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis sativus...	[more]
gi\|778698284\|ref\|XP_011654500.1\|	6.0e-49	96.23	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis sativus...	[more]
gi\|659109474\|ref\|XP_008454737.1\|	2.3e-48	95.28	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 [Cucumis melo]	[more]
gi\|659109472\|ref\|XP_008454736.1\|	2.3e-48	95.28	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 [Cucumis melo]	[more]
gi\|590696318\|ref\|XP_007045132.1\|	4.4e-44	91.09	Homeobox-leucine zipper protein HOX3 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR017970	Homeobox_CS
IPR009057	Homeobox-like_sf
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011650.1	Lsi04G011650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 3..31 score: 3.5
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 1..33 score: 12
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 33..67 score: 2.
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 33..76 score: 8.7
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 2..31 score: 3.6
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 3..42 score: 1.88
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 8..31 scor
None	No IPR available	unknown	Coil	Coil	coord: 46..66 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 3..108 score: 1.3
None	No IPR available	PANTHER	PTHR24326:SF114	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17-RELATED	coord: 3..108 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G011650	Csa5G065660	Cucumber (Chinese Long) v2	culsiB370
Lsi04G011650	CSPI05G01460	Wild cucumber (PI 183967)	cpilsiB374
Lsi04G011650	CmaCh04G000390	Cucurbita maxima (Rimu)	cmalsiB680
Lsi04G011650	CmoCh04G000370	Cucurbita moschata (Rifu)	cmolsiB673
Lsi04G011650	ClCG07G006750	Watermelon (Charleston Gray)	lsiwcgB296
Lsi04G011650	Cla97C07G134460	Watermelon (97103) v2	lsiwmbB297
Lsi04G011650	Bhi07G000238	Wax gourd	lsiwgoB389
Lsi04G011650	Cp4.1LG01g06250	Cucurbita pepo (Zucchini)	cpelsiB362
Lsi04G011650	Carg21993	Silver-seed gourd	carlsiB159
Lsi04G011650	CsaV3_5G015440	Cucumber (Chinese Long) v3	cuclsiB395

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G011650	Cucumber (Gy14) v1	cgylsiB426
Lsi04G011650	Cucurbita maxima (Rimu)	cmalsiB679
Lsi04G011650	Cucurbita moschata (Rifu)	cmolsiB672
Lsi04G011650	Cucurbita pepo (Zucchini)	cpelsiB361
Lsi04G011650	Melon (DHL92) v3.5.1	lsimeB284
Lsi04G011650	Watermelon (97103) v1	lsiwmB308
Lsi04G011650	Cucumber (Gy14) v2	cgyblsiB339
Lsi04G011650	Melon (DHL92) v3.6.1	lsimedB298
Lsi04G011650	Silver-seed gourd	carlsiB610