CmaCh16G002710 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 1275107 .. 1276297 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGGAATGAAGGCAAGTTCGGAAGCATCATTGTTGGAAGCGGAGGTAGCCCTACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGAAGGGAGATTAATCCTAGGCAATGTGGGTTGTGGCAAATTAGGAAGAGTAGTAGGGTTTGGTAAGGCAGGTAACGGCAGAAACCCTGATGGAACCACTGGCAAGTTCGGTAGAGTGGGCGAACCAGTTTGTAAAAGATGGCGGGCAGCTCGACCGACGTCGATGCTCGAATACGTCAAAGAAACAATGAAGGCAATGGTCAAGAACTCGGAAGAGTTTTTTTTTTTTTTTTTTTTTTTACTAAATTTTAATTATACTCCTCAACTTTTAAAAATATCATTTTTTAAATTTTAAATTAACGTTTCAAAACTATTTTTCTGTCAACTTTTTTTATTAAATGAAGATGAAAAAATAACGTGACAATGACCTATAAAATAATGGTACACGTTGGCGTAATAAAGGTGACATGTTTTAATTATATCTTTAAGATTATATGTTTCAATTATATCCTTAATGTTTCTAATTTTTATTTTAACCCTAAGTTATCGTCATGTTAGAATGAACATTTCTCGTTACCTATTGTATCTATTATTTTTCGTAGTGTGAGAGAGAAATAGAAAAAGAAAGAAATCCCGTTGAATCGAAAGAACAATATAATAACGAGAATGAACTTCAATCTTACAAACCGACACGAATATTTAAAACACACAACAATTCTGATAATAATAAAACCTTAAACTCCACACATAAACTACCCAACAAGAATCATGGCTGCAAATAACCAACCAAGCTTAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGAATGAAGGCAAGTTCGGAAGCGCCATTGTCGGGAGCGGGGGCAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACAACGGGCAAGTTCGGCACCAAGGGCGGAGTAGTTTGCAAGAGATGGCGGGCAGCTTGGCTGATGTCGATACTCGAAAGAGCCAAAGTAGCCAGGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGCTTTTGTAA

mRNA sequence

ATGGTAGGGAATGAAGGCAAGTTCGGAAGCATCATTGTTGGAAGCGGAGGTAGCCCTACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGAAGGGAGATTAATCCTAGGCAATGTGGGTTGTGGCAAATTAGGAAGAGTAGTAGGGTTTGGTAAGGCAGGTAACGGCAGAAACCCTGATGGAACCACTGGCAAGTTCGGTAGAGTGGGCGAACCAGTTTGTAAAAGATGGCGGGCAGCTCGACCGACGTCGATGCTCGAATACGTCAAAGAAACAATGAAGGCAATGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGAATGAAGGCAAGTTCGGAAGCGCCATTGTCGGGAGCGGGGGCAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACAACGGGCAAGTTCGGCACCAAGGGCGGAGTAGTTTGCAAGAGATGGCGGGCAGCTTGGCTGATGTCGATACTCGAAAGAGCCAAAGTAGCCAGGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGCTTTTGTAA

Coding sequence (CDS)

ATGGTAGGGAATGAAGGCAAGTTCGGAAGCATCATTGTTGGAAGCGGAGGTAGCCCTACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGAAGGGAGATTAATCCTAGGCAATGTGGGTTGTGGCAAATTAGGAAGAGTAGTAGGGTTTGGTAAGGCAGGTAACGGCAGAAACCCTGATGGAACCACTGGCAAGTTCGGTAGAGTGGGCGAACCAGTTTGTAAAAGATGGCGGGCAGCTCGACCGACGTCGATGCTCGAATACGTCAAAGAAACAATGAAGGCAATGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGAATGAAGGCAAGTTCGGAAGCGCCATTGTCGGGAGCGGGGGCAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACAACGGGCAAGTTCGGCACCAAGGGCGGAGTAGTTTGCAAGAGATGGCGGGCAGCTTGGCTGATGTCGATACTCGAAAGAGCCAAAGTAGCCAGGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGCTTTTGTAA

Protein sequence

MVGNEGKFGSIIVGSGGSPTPVGMFTGKLGSEGRLILGNVGCGKLGRVVGFGKAGNGRNPDGTTGKFGRVGEPVCKRWRAARPTSMLEYVKETMKAMGEEEAAGGGDKNGMEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTTIKNLEEAIEMVLKLL

Homology

[Close]

BLAST of CmaCh16G002710 vs. TrEMBL
Match: A0A0A0L0M4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374620 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.6e-26
Identity = 73/105 (69.52%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 111 MEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAG-----NGGIP 170
           MEGNE GMVG +GKFGS IVGSGG+A+P+G   GKL  GNVGCG FGR G     NGGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGS-GGKLIFGNVGCGNFGRVGFGKPGNGGIR 60

Query: 171 VGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTTIKNLEEAI 211
           VG  G+FGTKGGVVC+RWRAAW   +LERAKVA K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of CmaCh16G002710 vs. TrEMBL
Match: A0A0A0L399_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374640 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-25
Identity = 72/105 (68.57%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 111 MEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAG-----NGGIP 170
           MEGNE GMVG  G FGS IVGSGG+A+P+G   GKL  GNVGCG FGR G     NGGI 
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVGSGGNASPIGS-GGKLIFGNVGCGNFGRVGFGKPGNGGIR 60

Query: 171 VGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTTIKNLEEAI 211
           VG  G+FGTKGGVVC+RWRAAW   +LERAKVA K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of CmaCh16G002710 vs. TrEMBL
Match: A0A0A0KYM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G375140 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 111 MEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAG-----NGGIP 170
           MEGNE GMVG +GKFGS IVGSGG+ +P+    GKL  GNVGCG+FGR G     NGGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIES-GGKLTFGNVGCGKFGRVGFGKPGNGGIR 60

Query: 171 VGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTTIKNLE 208
           VG  G+FGTKGGVVC+RWR AW   +LERAKVA K  IKN E
Sbjct: 61  VGIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

[Close]

BLAST of CmaCh16G002710 vs. TrEMBL
Match: A0A0E0HWE3_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.9e-07
Identity = 73/250 (29.20%), Postives = 97/250 (38.80%), Query Frame = 1


Query: 2   VGNEGKFGSIIVGSGGSPTPVGMFT-GKLGSEGRLILGNVGCGKLGRVVGFGKAG----N 61
           +G +G  GS+ +G+ G     G  T G  G  G    G  G   +G  +  G AG    +
Sbjct: 119 IGTDGIGGSVTLGTAGIDGIGGSVTFGTAGIGGNTAFGTAGTAGIGGKLAAGTAGTAGIS 178

Query: 62  GRNPDGTTGKFGRVGEPVCKRWRAARPTSMLEYVKETM----------KAMGEEE----- 121
           G+   GT G     G     RWRAA    +L   K  M          +AM E       
Sbjct: 179 GKVTAGTVGTGTAAGGVASARWRAAWQLLLLPASKTAMASTVARRPEVEAMAERSQWLAS 238

Query: 122 ------AAGGGDKNGMEGNEAGM-----------VGNEGKFGSAIVGSGGSAAPLGM--L 181
                 A GGG KNG+  +  G            +G    FG+A +G   +    GM  +
Sbjct: 239 LAIRPYAEGGGAKNGIGTDGIGGSVTLGTAGIDGIGGSVTFGTAGMGGNAAFGTAGMAGI 298

Query: 182 TGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTT 213
            GKL  G  G    G    G +  GT G     GGV   RWRAAW + +L  +K A  +T
Sbjct: 299 GGKLAAGTAGMAGIG----GNVTAGTVGTGTAAGGVASARWRAAWQLRLLPASKTAMAST 358

[Close]

BLAST of CmaCh16G002710 vs. TrEMBL
Match: A0A0D3GM54_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-06
Identity = 76/240 (31.67%), Postives = 91/240 (37.92%), Query Frame = 1


Query: 3   GNEGKFGSI-IVGSGGSPTPVGMFTGKLGSEGRLILGNVGCGKLGRVVGFGKAG----NG 62
           G  G  G+    G GGS T      G  G  G    G VG   +G  V  G AG     G
Sbjct: 56  GTAGTVGTAGTAGIGGSAT-----LGTAGMGGNAAFGTVGTAGIGGRVAAGTAGMAGIGG 115

Query: 63  RNPDGTTGKFGRVGEPVCKRWRAARPTSMLEYVKETM----------KAMGEEE------ 122
           +   GT G     G     RWRAA    +L   K  M          +AM E        
Sbjct: 116 KVTAGTVGTGTAAGGVASARWRAAWQLLLLPASKTAMASTVARRPEVEAMAERSQWLASL 175

Query: 123 -----AAGGGDKNGMEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRF 182
                A GGG KNG        +G +G  GS  +G+ G     G +T            F
Sbjct: 176 AIRPYAEGGGAKNG--------IGTDGIGGSVTLGTAGIDGIGGSVT------------F 235

Query: 183 GRAGNGG-IPVGTTGKFGT---KGGVVCKRWRAAWLMSILERAKVARKTTIKNLEEAIEM 213
           G AG GG    GT G  GT    GGV   RWRAAW + +L  +K A  +T+    E   M
Sbjct: 236 GTAGMGGNAAFGTAGMAGTGTAAGGVASARWRAAWQLRLLPASKTAMASTVARRPEVEAM 270

[Close]

BLAST of CmaCh16G002710 vs. NCBI nr
Match: gi|659125953|ref|XP_008462936.1| (PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 91/132 (68.94%), Postives = 101/132 (76.52%), Query Frame = 1


Query: 90  VKETMKAMGEEEAAGGGDKNGMEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKG 149
           +K      GEEE AGGGDKNGMEGNE GMVG +GKFG A+ GSGG+A+PLGM TG+LG G
Sbjct: 5   IKPLTTPPGEEEVAGGGDKNGMEGNEVGMVGIDGKFGRAMFGSGGNASPLGMFTGELGSG 64

Query: 150 ------NVGCGRFG-----RAGNGGIPVGTTGKFGTKGGVVCKRWRAAWLMSILERAKVA 209
                 NVGCG+FG     +AGNGGIPVG TG+FGTKGG VCKRWRAAW  S+LERAKVA
Sbjct: 65  GRLTLGNVGCGKFGRVGFDKAGNGGIPVGITGRFGTKGGAVCKRWRAAWPTSMLERAKVA 124

Query: 210 RKTTIKNLEEAI 211
            K  IKNLEEAI
Sbjct: 125 IKAMIKNLEEAI 136

[Close]

BLAST of CmaCh16G002710 vs. NCBI nr
Match: gi|700199436|gb|KGN54594.1| (hypothetical protein Csa_4G374620 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 73/105 (69.52%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 111 MEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAG-----NGGIP 170
           MEGNE GMVG +GKFGS IVGSGG+A+P+G   GKL  GNVGCG FGR G     NGGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGS-GGKLIFGNVGCGNFGRVGFGKPGNGGIR 60

Query: 171 VGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTTIKNLEEAI 211
           VG  G+FGTKGGVVC+RWRAAW   +LERAKVA K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of CmaCh16G002710 vs. NCBI nr
Match: gi|700199438|gb|KGN54596.1| (hypothetical protein Csa_4G374640 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 72/105 (68.57%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 111 MEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAG-----NGGIP 170
           MEGNE GMVG  G FGS IVGSGG+A+P+G   GKL  GNVGCG FGR G     NGGI 
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVGSGGNASPIGS-GGKLIFGNVGCGNFGRVGFGKPGNGGIR 60

Query: 171 VGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTTIKNLEEAI 211
           VG  G+FGTKGGVVC+RWRAAW   +LERAKVA K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of CmaCh16G002710 vs. NCBI nr
Match: gi|700199440|gb|KGN54598.1| (hypothetical protein Csa_4G375140 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 111 MEGNEAGMVGNEGKFGSAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAG-----NGGIP 170
           MEGNE GMVG +GKFGS IVGSGG+ +P+    GKL  GNVGCG+FGR G     NGGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIES-GGKLTFGNVGCGKFGRVGFGKPGNGGIR 60

Query: 171 VGTTGKFGTKGGVVCKRWRAAWLMSILERAKVARKTTIKNLE 208
           VG  G+FGTKGGVVC+RWR AW   +LERAKVA K  IKN E
Sbjct: 61  VGIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

[Close]

BLAST of CmaCh16G002710 vs. NCBI nr
Match: gi|802578022|ref|XP_012069307.1| (PREDICTED: RNA-binding protein 12-like [Jatropha curcas])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1


Query: 103 AGGGDKNGMEGNEAGMVGNEGKFGSA---IVGSGGSAAPLGMLTGKLGKGN--VGCGRFG 162
           AGGG+KNG+EG   G+VG EGK G+    I+G+ G       + GKLG G   VG G+FG
Sbjct: 119 AGGGEKNGIEGIVVGIVGIEGKLGNGGKFILGTVG-------MVGKLGSGGSVVGLGKFG 178

Query: 163 RAGNG--GIPVGTTGKFGTKG-GVVCKRWRAAWLMSILERAKVARKTTIKNLEEAIEMVL 218
             G G  GI  G  G+FG +G G  C+R RAA L S+LE  K  ++  +K L+E + +  
Sbjct: 179 NVGCGRVGILGGIDGEFGIEGNGGNCRRLRAATLTSMLENDKAIKRARMKQLKEVMLLCC 234

The following BLAST results are available for this feature:

BLAST of CmaCh16G002710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0M4_CUCSA	7.6e-26	69.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374620 PE=4 SV=1	[more]
A0A0A0L399_CUCSA	8.4e-25	68.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374640 PE=4 SV=1	[more]
A0A0A0KYM4_CUCSA	2.1e-23	65.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G375140 PE=4 SV=1	[more]
A0A0E0HWE3_ORYNI	7.9e-07	29.20	Uncharacterized protein OS=Oryza nivara PE=4 SV=1	[more]
A0A0D3GM54_9ORYZ	6.7e-06	31.67	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]

BLAST of CmaCh16G002710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125953\|ref\|XP_008462936.1\|	2.8e-37	68.94	PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo]	[more]
gi\|700199436\|gb\|KGN54594.1\|	1.1e-25	69.52	hypothetical protein Csa_4G374620 [Cucumis sativus]	[more]
gi\|700199438\|gb\|KGN54596.1\|	1.2e-24	68.57	hypothetical protein Csa_4G374640 [Cucumis sativus]	[more]
gi\|700199440\|gb\|KGN54598.1\|	3.0e-23	65.69	hypothetical protein Csa_4G375140 [Cucumis sativus]	[more]
gi\|802578022\|ref\|XP_012069307.1\|	2.3e-07	43.09	PREDICTED: RNA-binding protein 12-like [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002710.1	CmaCh16G002710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002710	MELO3C024842	Melon (DHL92) v3.5.1	cmameB306
CmaCh16G002710	ClCG10G009580	Watermelon (Charleston Gray)	cmawcgB280
CmaCh16G002710	CmoCh16G002910	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002710	Lsi03G009680	Bottle gourd (USVL1VR-Ls)	cmalsiB307
CmaCh16G002710	MELO3C032874.2	Melon (DHL92) v3.6.1	cmamedB354
CmaCh16G002710	MELO3C024842.2	Melon (DHL92) v3.6.1	cmamedB357
CmaCh16G002710	Bhi11G000863	Wax gourd	cmawgoB0410
CmaCh16G002710	Carg19730	Silver-seed gourd	carcmaB0406

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002710	Cucurbita maxima (Rimu)	cmacmaB135
CmaCh16G002710	Cucurbita maxima (Rimu)	cmacmaB342
CmaCh16G002710	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G002710	Cucurbita moschata (Rifu)	cmacmoB330
CmaCh16G002710	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002710	Watermelon (97103) v1	cmawmB293
CmaCh16G002710	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002710	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002710	Melon (DHL92) v3.6.1	cmamedB331
CmaCh16G002710	Silver-seed gourd	carcmaB0400
CmaCh16G002710	Silver-seed gourd	carcmaB0526
CmaCh16G002710	Watermelon (97103) v2	cmawmbB332