MELO3C024842.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024842.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	BnaA03g52590D protein
Location	chr07 : 18709310 .. 18709895 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAATGGAACGCTATATGATACCCATGGAGGTCTGAACTTCAATCTAACAGAAGATATGAATATTGAAATTAAAACACACAATTACGAGTTATCAATAAAACTTCACAACTCTACCCTTAAACTAATTAACCAACAACAATTAGGGCTGCATATATTAAATAATAACCAAACCAAGTTTAGGGAGAAGAAGATGTTGCAGGAGGAGGGGACAAAAATGGGATGGAAGGGAATGAAGTTGGAATGGTAGGGATTGATGGAAAGTTCGGAAGTGCCATTGTCGGGAGCGGTGGCAACGCTAGCCCGTTCGGAAGCGGAGGGAGATTAACCTTCGGTATTGTAGGTTGTGGTAAATTTGGAAGAGTAGGGTTTGGCAAGGCAGGGAATGGCGGTATCCCGGTTGGAATTGCTGGAAGATTTGGCACCAAGGGCGGAGTGGTTTGCAAAAGATGGCGAGCAGCTTGGCCGAAGTTGATGCTTGAGAGAGCCAAAGTAGCCATAAAGGCAATGATCAAGAACTTTGAAGAAGCCATTTTTTTCCCTTTGAGAAGATGATTTGAAGTTTTTGTTAAGATGAGAGATGAGAT

mRNA sequence

TCAAATGGAACGCTATATGATACCCATGGAGGTCTGAACTTCAATCTAACAGAAGATATGAATATTGAAATTAAAACACACAATTACGAGTTATCAATAAAACTTCACAACTCTACCCTTAAACTAATTAACCAACAACAATTAGGGCTGCATATATTAAATAATAACCAAACCAAGTTTAGGGAGAAGAAGATGTTGCAGGAGGAGGGGACAAAAATGGGATGGAAGGGAATGAAGTTGGAATGGTAGGGATTGATGGAAAGTTCGGAAGTGCCATTGTCGGGAGCGGTGGCAACGCTAGCCCGTTCGGAAGCGGAGGGAGATTAACCTTCGGTATTGTAGGTTGTGGTAAATTTGGAAGAGTAGGGTTTGGCAAGGCAGGGAATGGCGGTATCCCGGTTGGAATTGCTGGAAGATTTGGCACCAAGGGCGGAGTGGTTTGCAAAAGATGGCGAGCAGCTTGGCCGAAGTTGATGCTTGAGAGAGCCAAAGTAGCCATAAAGGCAATGATCAAGAACTTTGAAGAAGCCATTTTTTTCCCTTTGAGAAGATGATTTGAAGTTTTTGTTAAGATGAGAGATGAGAT

Coding sequence (CDS)

ATGGAAGGGAATGAAGTTGGAATGGTAGGGATTGATGGAAAGTTCGGAAGTGCCATTGTCGGGAGCGGTGGCAACGCTAGCCCGTTCGGAAGCGGAGGGAGATTAACCTTCGGTATTGTAGGTTGTGGTAAATTTGGAAGAGTAGGGTTTGGCAAGGCAGGGAATGGCGGTATCCCGGTTGGAATTGCTGGAAGATTTGGCACCAAGGGCGGAGTGGTTTGCAAAAGATGGCGAGCAGCTTGGCCGAAGTTGATGCTTGAGAGAGCCAAAGTAGCCATAAAGGCAATGATCAAGAACTTTGAAGAAGCCATTTTTTTCCCTTTGAGAAGATGA

Protein sequence

MEGNEVGMVGIDGKFGSAIVGSGGNASPFGSGGRLTFGIVGCGKFGRVGFGKAGNGGIPVGIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFPLRR

Homology

[Close]

BLAST of MELO3C024842.2 vs. NCBI nr
Match: KGN54594.1 (hypothetical protein Csa_4G374620 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 8.5e-23
Identity = 75/107 (70.09%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MEGNEVGMVGIDGKFGSAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPV 60
           MEGNE+GMVGIDGKFGS IV                      XXXXXXXXXXXXX    V
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGSGGKLIFGNVGCXXXXXXXXXXXXXGGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFP 108
           GIAGRFGTKGGVVC+RWRAAWPKLMLERAKVA+KAMIKN E AIFFP
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAIFFP 107

[Close]

BLAST of MELO3C024842.2 vs. NCBI nr
Match: KGN54596.1 (hypothetical protein Csa_4G374640 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 86/107 (80.37%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MEGNEVGMVGIDGKFGSAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPV 60
           MEGNE+GMVGI G FGS IVXXXXXXXXXXXXX         XXXXXXXXXXXXX    V
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVXXXXXXXXXXXXXKLIFGNVGCXXXXXXXXXXXXXGGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFP 108
           GIAGRFGTKGGVVC+RWRAAWPKLMLERAKVA+KAMIKN E AIFFP
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAIFFP 107

[Close]

BLAST of MELO3C024842.2 vs. NCBI nr
Match: KGN54598.1 (hypothetical protein Csa_4G375140 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 4.0e-20
Identity = 70/101 (69.31%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MEGNEVGMVGIDGKFGSAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPV 60
           MEGNE+GMVGIDGKFGS IV                       XXXXXXXXXXXXX   V
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIESGGKLTFGNVGCGXXXXXXXXXXXXXGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFE 102
           GIAGRFGTKGGVVC+RWR AWPKLMLERAKVA+KAMIKNFE
Sbjct: 61  GIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

[Close]

BLAST of MELO3C024842.2 vs. TrEMBL
Match: tr|A0A0A0L0M4|A0A0A0L0M4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 75/107 (70.09%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MEGNEVGMVGIDGKFGSAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPV 60
           MEGNE+GMVGIDGKFGS IV                      XXXXXXXXXXXXX    V
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGSGGKLIFGNVGCXXXXXXXXXXXXXGGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFP 108
           GIAGRFGTKGGVVC+RWRAAWPKLMLERAKVA+KAMIKN E AIFFP
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAIFFP 107

[Close]

BLAST of MELO3C024842.2 vs. TrEMBL
Match: tr|A0A0A0L399|A0A0A0L399_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 86/107 (80.37%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MEGNEVGMVGIDGKFGSAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPV 60
           MEGNE+GMVGI G FGS IVXXXXXXXXXXXXX         XXXXXXXXXXXXX    V
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVXXXXXXXXXXXXXKLIFGNVGCXXXXXXXXXXXXXGGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFP 108
           GIAGRFGTKGGVVC+RWRAAWPKLMLERAKVA+KAMIKN E AIFFP
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAIFFP 107

[Close]

BLAST of MELO3C024842.2 vs. TrEMBL
Match: tr|A0A0A0KYM4|A0A0A0KYM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 70/101 (69.31%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MEGNEVGMVGIDGKFGSAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPV 60
           MEGNE+GMVGIDGKFGS IV                       XXXXXXXXXXXXX   V
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIESGGKLTFGNVGCGXXXXXXXXXXXXXGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFE 102
           GIAGRFGTKGGVVC+RWR AWPKLMLERAKVA+KAMIKNFE
Sbjct: 61  GIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

The following BLAST results are available for this feature:

BLAST of MELO3C024842.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54594.1	8.5e-23	70.09	hypothetical protein Csa_4G374620 [Cucumis sativus]	[more]
KGN54596.1	2.1e-21	80.37	hypothetical protein Csa_4G374640 [Cucumis sativus]	[more]
KGN54598.1	4.0e-20	69.31	hypothetical protein Csa_4G375140 [Cucumis sativus]	[more]

BLAST of MELO3C024842.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C024842.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C024842.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0M4\|A0A0A0L0M4_CUCSA	5.6e-23	70.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1	[more]
tr\|A0A0A0L399\|A0A0A0L399_CUCSA	1.4e-21	80.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1	[more]
tr\|A0A0A0KYM4\|A0A0A0KYM4_CUCSA	2.6e-20	69.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024842.2.1	MELO3C024842.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024842.2	CmaCh16G002710	Cucurbita maxima (Rimu)	cmamedB357
MELO3C024842.2	Lsi03G009680	Bottle gourd (USVL1VR-Ls)	lsimedB283
MELO3C024842.2	ClCG10G009580	Watermelon (Charleston Gray)	medwcgB447

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024842.2	Cucumber (Chinese Long) v3	cucmedB312
MELO3C024842.2	Watermelon (97103) v2	medwmbB458
MELO3C024842.2	Cucumber (Gy14) v2	cgybmedB271
MELO3C024842.2	Cucumber (Gy14) v1	cgymedB303
MELO3C024842.2	Cucurbita moschata (Rifu)	cmomedB339
MELO3C024842.2	Wild cucumber (PI 183967)	cpimedB306
MELO3C024842.2	Cucumber (Chinese Long) v2	cumedB302
MELO3C024842.2	Watermelon (97103) v1	medwmB484