MELO3C032874.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032874.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr07 : 28943027 .. 28943709 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAATACAAGACAAACGTAACTGAAACAACAGCTAGCACACTCGAAAAAAGTATCATCGGTGAAATACAGGAAAACAATCAATCGTCACAAAAACAGCTATCCTATACCAAACTCAAGGAGAAGAAGTTGCAGGTGGAGGAGAGAAGAATGGGAGCGACGACGGAAGTGTAGTCGGGATTGATGGGAGGGATGGCAAGTTTGGAAGTGAAGTTGTCGGAAGAGGAGGCAACGCTACTTTGGTTGGGATGTTTATGGGGAGGCTTGGAAGTGGAGGAAGTGTAAGCTTAGGGAGGGAAGGTAGTGGGAAGTTTGGGATGGATGGAATACTCGGACCGGTTGGCACTGGTGGTAGAGGCGGTACTGCAGATGGCTTAGGTAGTGATGGCATTGGTGGCAAATTTGGAATTGTCTGCAGAAGATGTCGAGAAGTTCGAGCAGCATCCACGCTTGAAAATGCCAAAGTAACCATGAAGGCGAGAATGAAGCAGTTGAAAGAAGCCATACGTATGAAGAAAATTATGGAGGTTTGAATGATTTGGGATTTTGAATAGAGAAGAGAAGAGGTAGTTTTGGTTTATATAGTAGCGATTGAGAGTTTTGTGGGCAATCAGGTTGGTGAATCTGACCACCAATTTTTATGTGTTTGTTTGTTTACTAAGGACCGCAATGAAAATTAG

mRNA sequence

ATGAAGCAATACAAGACAAACGTAACTGAAACAACAGCTAGCACACTCGAAAAAAGTATCATCGGAAAACAATCAATCGTCACAAAAACAGCTATCCTATACCAAACTCAAGGAGAAGAAGTTGCAGGTGGAGGAGAGAAGAATGGGAGCGACGACGGAAGTGTAGTCGGGATTGATGGGAGGGATGGCAAGTTTGGAAGTGAAGTTGTCGGAAGAGGAGGCAACGCTACTTTGGTTGGGATGTTTATGGGGAGGCTTGGAAGTGGAGGAAGTGTAAGCTTAGGGAGGGAAGGTAGTGGGAAGTTTGGGATGGATGGAATACTCGGACCGGTTGGCACTGGTGGTAGAGGCGGTACTGCAGATGGCTTAGGTAGTGATGGCATTGGTGGCAAATTTGGAATTGTCTGCAGAAGATGTCGAGAAGTTCGAGCAGCATCCACGCTTGAAAATGCCAAAGTAACCATGAAGGCGAGAATGAAGCAGTTGAAAGAAGCCATACGTATGAAGAAAATTATGGAGAGAAGAGAAGAGGTAGTTTTGGTTTATATAGTAGCGATTGAGAGTTTTGTGGGCAATCAGGACCGCAATGAAAATTAG

Coding sequence (CDS)

ATGAAGCAATACAAGACAAACGTAACTGAAACAACAGCTAGCACACTCGAAAAAAGTATCATCGGAAAACAATCAATCGTCACAAAAACAGCTATCCTATACCAAACTCAAGGAGAAGAAGTTGCAGGTGGAGGAGAGAAGAATGGGAGCGACGACGGAAGTGTAGTCGGGATTGATGGGAGGGATGGCAAGTTTGGAAGTGAAGTTGTCGGAAGAGGAGGCAACGCTACTTTGGTTGGGATGTTTATGGGGAGGCTTGGAAGTGGAGGAAGTGTAAGCTTAGGGAGGGAAGGTAGTGGGAAGTTTGGGATGGATGGAATACTCGGACCGGTTGGCACTGGTGGTAGAGGCGGTACTGCAGATGGCTTAGGTAGTGATGGCATTGGTGGCAAATTTGGAATTGTCTGCAGAAGATGTCGAGAAGTTCGAGCAGCATCCACGCTTGAAAATGCCAAAGTAACCATGAAGGCGAGAATGAAGCAGTTGAAAGAAGCCATACGTATGAAGAAAATTATGGAGAGAAGAGAAGAGGTAGTTTTGGTTTATATAGTAGCGATTGAGAGTTTTGTGGGCAATCAGGACCGCAATGAAAATTAG

Protein sequence

MKQYKTNVTETTASTLEKSIIGKQSIVTKTAILYQTQGEEVAGGGEKNGSDDGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGREGSGKFGMDGILGPVGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKARMKQLKEAIRMKKIMERREEVVLVYIVAIESFVGNQDRNEN
Homology
[Close]
BLAST of MELO3C032874.2 vs. NCBI nr
Match: XP_016901486.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 3.1e-68
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 22  GKQSIVTKTAILYQTQGEEVAGGGEKNGSDDGSVVGIDGRDGKFGSEVVGRGGNATLVGM 81
           GKQSIVTKTAILYQTQGEEVAGGGEKNGSDDGSVVGIDGRDGKFGSEVVGRGGNATLVGM
Sbjct: 3   GKQSIVTKTAILYQTQGEEVAGGGEKNGSDDGSVVGIDGRDGKFGSEVVGRGGNATLVGM 62

Query: 82  FMGRLGSGGSVSLGREGSGKFGMDGILGPVXXXXXXXXADGLGSDGIGGKFGIVCRRCRE 141
           FMGRLGSGGSVSLGREGSGKFGMDGILGPVXXXXXXXXADGLGSDGIGGKFGIVCRRCRE
Sbjct: 63  FMGRLGSGGSVSLGREGSGKFGMDGILGPVXXXXXXXXADGLGSDGIGGKFGIVCRRCRE 122

Query: 142 VRAASTLENAKVTMKARMKQLKEAIRMKKIME 174
           VRAASTLENAKVTMKARMKQLKEAIRMKKIME
Sbjct: 123 VRAASTLENAKVTMKARMKQLKEAIRMKKIME 154

[Close]
BLAST of MELO3C032874.2 vs. TrEMBL
Match: tr|A0A1S4DZT7|A0A1S4DZT7_CUCME (uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC107991270 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.1e-68
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 22  GKQSIVTKTAILYQTQGEEVAGGGEKNGSDDGSVVGIDGRDGKFGSEVVGRGGNATLVGM 81
           GKQSIVTKTAILYQTQGEEVAGGGEKNGSDDGSVVGIDGRDGKFGSEVVGRGGNATLVGM
Sbjct: 3   GKQSIVTKTAILYQTQGEEVAGGGEKNGSDDGSVVGIDGRDGKFGSEVVGRGGNATLVGM 62

Query: 82  FMGRLGSGGSVSLGREGSGKFGMDGILGPVXXXXXXXXADGLGSDGIGGKFGIVCRRCRE 141
           FMGRLGSGGSVSLGREGSGKFGMDGILGPVXXXXXXXXADGLGSDGIGGKFGIVCRRCRE
Sbjct: 63  FMGRLGSGGSVSLGREGSGKFGMDGILGPVXXXXXXXXADGLGSDGIGGKFGIVCRRCRE 122

Query: 142 VRAASTLENAKVTMKARMKQLKEAIRMKKIME 174
           VRAASTLENAKVTMKARMKQLKEAIRMKKIME
Sbjct: 123 VRAASTLENAKVTMKARMKQLKEAIRMKKIME 154

The following BLAST results are available for this feature:
BLAST of MELO3C032874.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901486.13.1e-68100.00PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis me... [more]
BLAST of MELO3C032874.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032874.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032874.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZT7|A0A1S4DZT7_CUCME2.1e-68100.00uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC1... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032874.2.1MELO3C032874.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C032874.2CmaCh16G002710Cucurbita maxima (Rimu)cmamedB354
MELO3C032874.2CmoCh16G002910Cucurbita moschata (Rifu)cmomedB342
MELO3C032874.2Lsi03G009680Bottle gourd (USVL1VR-Ls)lsimedB282
MELO3C032874.2Carg19730Silver-seed gourdcarmedB0308
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032874.2Cucumber (Chinese Long) v3cucmedB294
MELO3C032874.2Watermelon (97103) v2medwmbB456
MELO3C032874.2Wax gourdmedwgoB569
MELO3C032874.2Cucumber (Gy14) v1cgymedB543
MELO3C032874.2Wild cucumber (PI 183967)cpimedB290
MELO3C032874.2Cucumber (Chinese Long) v2cumedB286
MELO3C032874.2Watermelon (Charleston Gray)medwcgB446
MELO3C032874.2Watermelon (97103) v1medwmB483