Carg19730 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19730
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_133 : 377746 .. 379433 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATCGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGACGGTAACGGAGGCAAGGCTGCTCCGGCCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGGGCTTAGAGAGCGATGGAATACTCGATCCAGTTGTTGGGTTTGGCAATATGGGCGATGCAGGAAGAGGGGGTAGCGCACATGGGTTAGGAAGCAATGGCATTGGTGGTAGAGTTGGGAGCGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACCAGTGTAGGTGACCAAACCAGTTACGACGACTCTCTGACTCGAAATTCACGAACCTTTTGGACACAAAAATTCAAAATTAGAAGTTTAGAGATCGGTTTGGTATTTTTAAAGTTTAAAGATTTAAAAGTAAAATTAACGAGACTTGGAATTTAACGTTAGCAACTTAAAATAATGTGAGATTTCACATCAGTTGGAGAGGATAACGAATTATTTCTTATAAGAGTGTGAAAATCTCTCTTTAGTAGACGCCTTTTTAAATCGTGAGGCTGTCGGTGATACATAATGGACTAAAGTGGACACTATCTGTTGATAGACTTGAGTTGTTACAAATGATATCAGAGCCAGACACGAGGCGGCATGCCATCAAGACACTAGGTCTCGTTGGAGTGTGAATTGTGAGATCCCACATTGATTGGAGAGAGGAATAAAACACTTCTTACGAGAGTGTGAAAACCTCTCCCTAGCAGACACGTTGGCTGATGACGATACATAATGCGTCAAAGCGGACAATATTTGTTAGCGGTAGGTTTGCGCTGCTATGGACTACTCTTGCTCACTCATTTTCATTCTTGGCTATGATGGATTGATAAGCGATCTAATAGATTATTATTATTATTATTTATTTATTTATTTTAATTTTGACGTTGAATTTTATAGTATCGAGGTCACGTCTCGTGTTTGAAAATTTGTAAACGTCATTTTCTCTCTAATTAATTTTTATTTCTACTTATTGACTTTCTACAAATTTATAATAAGTCGAGTGAGAAATATTTAAATAATTAAACTTATGATGGATTGATAAACGATATAATAGAAATATTTTTTTTTTTCTTTTTTTTAGTTCAAAAGCGTTATTTAATAATGTATTTAACAAAAAAAATAAATAAATAAATAAAAGAAAATTCCATATCATATCATTAAAAAATAGAACACAGTACAAGACAAACTTTTAAACAAACTCCAAATATAACCAATAACATGAAAGGATAGAATGGTATGTCAAAACCATAAGTATAATTAAGAACAATCACACAAAGGAACTAGCTAGGACTCCATCAAGGTGAAGAGGTAGCGGCCGGGGGCGGTGTGAGGAAAGGGATCGACGGGAAAGTCATTGGGAAGGACGGTAGAGTCGGGAGTGGAGGCAATGTCACTCCGGTCGGGATGCTACCGGGGAAGCTAGGAAGAGGAGGCATCTTAGGGAGAGAAGGTTGAGTAGTTGGCAACGTAGGCTGTGGGAGATTAGGAATAGAGGGCATTCCCGGTACCGTCGGGAAGGGCGGTAGAGGCGGCAACGAGGGCAACCCTGGCACGCTCGGCTGA

mRNA sequence

ATGAAAACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATCGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGACGGTAACGGAGGCAAGGCTGCTCCGGCCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGGGCTTAGAGAGCGATGGAATACTCGATCCAGTTGTTGGGTTTGGCAATATGGGCGATGCAGGAAGAGGGGGTAGCGCACATGGGTTAGGAAGCAATGGCATTGGTGGTAGAGTTGGGAGCGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACCACTAGGACTCCATCAAGGTGAAGAGGTAGCGGCCGGGGGCGGTGTGAGGAAAGGGATCGACGGGAAAGTCATTGGGAAGGACGGTAGAGTCGGGAGTGGAGGCAATGTCACTCCGGTCGGGATGCTACCGGGGAAGCTAGGAAGAGGAGGCATCTTAGGGAGAGAAGGCTGTGGGAGATTAGGAATAGAGGGCATTCCCGGTACCGTCGGGAAGGGCGGTAGAGGCGGCAACGAGGGCAACCCTGGCACGCTCGGCTGA

Coding sequence (CDS)

ATGAAAACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATCGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGACGGTAACGGAGGCAAGGCTGCTCCGGCCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGGGCTTAGAGAGCGATGGAATACTCGATCCAGTTGTTGGGTTTGGCAATATGGGCGATGCAGGAAGAGGGGGTAGCGCACATGGGTTAGGAAGCAATGGCATTGGTGGTAGAGTTGGGAGCGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACCACTAGGACTCCATCAAGGTGAAGAGGTAGCGGCCGGGGGCGGTGTGAGGAAAGGGATCGACGGGAAAGTCATTGGGAAGGACGGTAGAGTCGGGAGTGGAGGCAATGTCACTCCGGTCGGGATGCTACCGGGGAAGCTAGGAAGAGGAGGCATCTTAGGGAGAGAAGGCTGTGGGAGATTAGGAATAGAGGGCATTCCCGGTACCGTCGGGAAGGGCGGTAGAGGCGGCAACGAGGGCAACCCTGGCACGCTCGGCTGA

Protein sequence

MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVGIDGRDGKVGSEDDGNGGKAAPAGMFIGELGSGGSVGLESDGILDPVVGFGNMGDAGRGGSAHGLGSNGIGGRVGSEGGAVCRRCRVARPLGLHQGEEVAAGGGVRKGIDGKVIGKDGRVGSGGNVTPVGMLPGKLGRGGILGREGCGRLGIEGIPGTVGKGGRGGNEGNPGTLG

Homology

[Close]

BLAST of Carg19730 vs. NCBI nr
Match: XP_022922561.1 (oleosin-B3 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 6.5e-16
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVGIDGRDGKVGXXXXXXXXXXXXXXXXXX 60
           MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVGIDGRDGKVGXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVGIDGRDGKVGXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRVGSEGGAVCRRCRVA 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RVGSEGGAVCRRCRVA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGSEGGAVCRRCRVA 120

Query: 121 R 122
           R
Sbjct: 121 R 121

[Close]

BLAST of Carg19730 vs. NCBI nr
Match: XP_022984242.1 (uncharacterized protein LOC111482613 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 116/122 (95.08%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVGIDGRDGKVGXXXXXXXXXXXXXXXXXX 60
           MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVG+DGRDGKVGXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVGMDGRDGKVGXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRVGSEGGAVCRRCRVA 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EGGAVCRRCRVA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGAVCRRCRVA 120

Query: 121 RP 123
           RP
Sbjct: 121 RP 122

The following BLAST results are available for this feature:

BLAST of Carg19730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922561.1	6.5e-16	99.17	oleosin-B3 [Cucurbita moschata]	[more]
XP_022984242.1	1.0e-13	95.08	uncharacterized protein LOC111482613 [Cucurbita maxima]	[more]

BLAST of Carg19730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19730 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19730-RA	Carg19730-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19730	ClCG10G009580	Watermelon (Charleston Gray)	carwcgB0287
Carg19730	CmaCh16G002710	Cucurbita maxima (Rimu)	carcmaB0406
Carg19730	CmoCh16G002910	Cucurbita moschata (Rifu)	carcmoB0402
Carg19730	Lsi03G009680	Bottle gourd (USVL1VR-Ls)	carlsiB269
Carg19730	MELO3C032874.2	Melon (DHL92) v3.6.1	carmedB0308
Carg19730	Cla97C10G192670	Watermelon (97103) v2	carwmbB0302

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19730	Wax gourd	carwgoB0381
Carg19730	Silver-seed gourd	carcarB324
Carg19730	Cucurbita maxima (Rimu)	carcmaB0405
Carg19730	Cucurbita maxima (Rimu)	carcmaB0408
Carg19730	Cucurbita moschata (Rifu)	carcmoB0401
Carg19730	Cucurbita moschata (Rifu)	carcmoB0403
Carg19730	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19730	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19730	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19730	Melon (DHL92) v3.6.1	carmedB0306
Carg19730	Watermelon (97103) v1	carwmB0287