CmoCh16G002910 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1330555 .. 1331645 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAATTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGTAATGGTCAAGAACTTTGGAAGAGGCCTATTTTTTTTGTACTAATTTTTAATTATACTCCTCAACATTTACAAATATCATTTTTAAAACTTTAAATTAACGCAACTTTTTTGTTAAATGAAGATGAAAAAACATGACAATGACCTATAAAATAATGGTACACGTTGACGTAATAAAGGTGACATGTTTTAATTATATCATTAAACTTTAAGATATGTTTCAATTATATCCTTAATGTTTCTAATTTTCATTTTAACCCTAAGTTATCGTCACGTTGGAATGAACATTTTTCGTTGCTGATCGTATCTATTATTTTTCGTAGTGTGAGAGAGAAATAGAAAAAGAAAGAGATCCCGTTGAATTGAAATTTAAAAGCTTGAACAATATAATAACGAGAATGAACTTCAATCTTACAAACCGACACGAATATTGAAAACACACAACAATTGTGATAATAATAAAACCTTAAACTCCACACACAAACTACCCAACAAGAATCATGGCTGCAAATAACCAACCAAGCTTAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGGCGGAGTAGTTTGCAAGAGATGGCGGGCAGCTTGA

mRNA sequence

ATGGGGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAATTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGGCGGAGTAGTTTGCAAGAGATGGCGGGCAGCTTGA

Coding sequence (CDS)

ATGGGGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAATTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGGCGGAGTAGTTTGCAAGAGATGGCGGGCAGCTTGA
Homology
[Close]
BLAST of CmoCh16G002910 vs. TrEMBL
Match: A0A0A0L0M4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374620 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPI 69
           +VG +GKFGS IVGSGG+ +P+G       SGG+L  GNVGCG FGRVGFGK GN G  +
Sbjct: 8   MVGIDGKFGSVIVGSGGNASPIG-------SGGKLIFGNVGCGNFGRVGFGKPGNGGIRV 67

Query: 70  GTTGKFGSVGEPIYKRWWAARPTSMLESVKATMK 104
           G  G+FG+ G  + +RW AA P  MLE  K  +K
Sbjct: 68  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVK 94

[Close]
BLAST of CmoCh16G002910 vs. TrEMBL
Match: A0A0A0KYM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G375140 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPI 69
           +VG +GKFGS IVGSGG+ +P+        SGG+LT GNVGCG FGRVGFGK GN G  +
Sbjct: 8   MVGIDGKFGSVIVGSGGNGSPIE-------SGGKLTFGNVGCGKFGRVGFGKPGNGGIRV 67

Query: 70  GTTGKFGSVGEPIYKRWWAARPTSMLESVKATMK 104
           G  G+FG+ G  + +RW  A P  MLE  K  +K
Sbjct: 68  GIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVK 94

[Close]
BLAST of CmoCh16G002910 vs. TrEMBL
Match: A0A0A0L399_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374640 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-16
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPI 69
           +VG  G FGS IVGSGG+ +P+G       SGG+L  GNVGCG FGRVGFGK GN G  +
Sbjct: 8   MVGIGGNFGSVIVGSGGNASPIG-------SGGKLIFGNVGCGNFGRVGFGKPGNGGIRV 67

Query: 70  GTTGKFGSVGEPIYKRWWAARPTSMLESVKATMK 104
           G  G+FG+ G  + +RW AA P  MLE  K  +K
Sbjct: 68  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVK 94

[Close]
BLAST of CmoCh16G002910 vs. TrEMBL
Match: A0A022RK91_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a020713mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 73/188 (38.83%), Postives = 90/188 (47.87%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLT------LGNVGCGIFGRVGFGKAG 69
           +VG EG  GS +  SGGS T +GM    +GSGG +       LGN G  + G+  FG AG
Sbjct: 18  VVGIEGIVGSGLAASGGSAT-LGMAGMLVGSGGSVAAGKFGMLGNGGSVVAGK--FGMAG 77

Query: 70  NDGNPIGTTGKFGSVGEPIYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEGNEAG 129
           N G+     GKFG+ G         +     + SV     G  E      + G EG   G
Sbjct: 78  NGGSV--AAGKFGTAG---------SGGNVAVGSVGIVGSGGREV---WSRKGKEGIVVG 137

Query: 130 M-VGIDAIVGSGGSAA--PLGMLTGKLGKGNVGCGRFGRAGNGG-IPVGTTGKFGTKGGV 188
           M VG   +VGSGGSAA    GML G    GNV  G+FG AGNGG +  G  G  G  G V
Sbjct: 138 MLVGSAGMVGSGGSAALGMAGMLVGS--GGNVAAGKFGMAGNGGSVAAGKFGMAGNGGSV 186

[Close]
BLAST of CmoCh16G002910 vs. NCBI nr
Match: gi|659125953|ref|XP_008462936.1| (PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPI 69
           +VG +GKFG A+ GSGG+ +P+GMFTG+LGSGGRLTLGNVGCG FGRVGF KAGN G P+
Sbjct: 33  MVGIDGKFGRAMFGSGGNASPLGMFTGELGSGGRLTLGNVGCGKFGRVGFDKAGNGGIPV 92

Query: 70  GTTGKFGSVGEPIYKRWWAARPTSMLE----SVKATMKGEEEA 109
           G TG+FG+ G  + KRW AA PTSMLE    ++KA +K  EEA
Sbjct: 93  GITGRFGTKGGAVCKRWRAAWPTSMLERAKVAIKAMIKNLEEA 135

[Close]
BLAST of CmoCh16G002910 vs. NCBI nr
Match: gi|700199436|gb|KGN54594.1| (hypothetical protein Csa_4G374620 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.1e-17
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPI 69
           +VG +GKFGS IVGSGG+ +P+G       SGG+L  GNVGCG FGRVGFGK GN G  +
Sbjct: 8   MVGIDGKFGSVIVGSGGNASPIG-------SGGKLIFGNVGCGNFGRVGFGKPGNGGIRV 67

Query: 70  GTTGKFGSVGEPIYKRWWAARPTSMLESVKATMK 104
           G  G+FG+ G  + +RW AA P  MLE  K  +K
Sbjct: 68  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVK 94

[Close]
BLAST of CmoCh16G002910 vs. NCBI nr
Match: gi|700199440|gb|KGN54598.1| (hypothetical protein Csa_4G375140 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPI 69
           +VG +GKFGS IVGSGG+ +P+        SGG+LT GNVGCG FGRVGFGK GN G  +
Sbjct: 8   MVGIDGKFGSVIVGSGGNGSPIE-------SGGKLTFGNVGCGKFGRVGFGKPGNGGIRV 67

Query: 70  GTTGKFGSVGEPIYKRWWAARPTSMLESVKATMK 104
           G  G+FG+ G  + +RW  A P  MLE  K  +K
Sbjct: 68  GIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVK 94

[Close]
BLAST of CmoCh16G002910 vs. NCBI nr
Match: gi|700199438|gb|KGN54596.1| (hypothetical protein Csa_4G374640 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 6.7e-16
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPI 69
           +VG  G FGS IVGSGG+ +P+G       SGG+L  GNVGCG FGRVGFGK GN G  +
Sbjct: 8   MVGIGGNFGSVIVGSGGNASPIG-------SGGKLIFGNVGCGNFGRVGFGKPGNGGIRV 67

Query: 70  GTTGKFGSVGEPIYKRWWAARPTSMLESVKATMK 104
           G  G+FG+ G  + +RW AA P  MLE  K  +K
Sbjct: 68  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVK 94

[Close]
BLAST of CmoCh16G002910 vs. NCBI nr
Match: gi|604335385|gb|EYU39310.1| (hypothetical protein MIMGU_mgv1a020713mg, partial [Erythranthe guttata])

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 73/188 (38.83%), Postives = 90/188 (47.87%), Query Frame = 1 

Query: 10  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLT------LGNVGCGIFGRVGFGKAG 69
           +VG EG  GS +  SGGS T +GM    +GSGG +       LGN G  + G+  FG AG
Sbjct: 18  VVGIEGIVGSGLAASGGSAT-LGMAGMLVGSGGSVAAGKFGMLGNGGSVVAGK--FGMAG 77

Query: 70  NDGNPIGTTGKFGSVGEPIYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEGNEAG 129
           N G+     GKFG+ G         +     + SV     G  E      + G EG   G
Sbjct: 78  NGGSV--AAGKFGTAG---------SGGNVAVGSVGIVGSGGREV---WSRKGKEGIVVG 137

Query: 130 M-VGIDAIVGSGGSAA--PLGMLTGKLGKGNVGCGRFGRAGNGG-IPVGTTGKFGTKGGV 188
           M VG   +VGSGGSAA    GML G    GNV  G+FG AGNGG +  G  G  G  G V
Sbjct: 138 MLVGSAGMVGSGGSAALGMAGMLVGS--GGNVAAGKFGMAGNGGSVAAGKFGMAGNGGSV 186

The following BLAST results are available for this feature:
BLAST of CmoCh16G002910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0M4_CUCSA4.2e-1754.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374620 PE=4 SV=1[more]
A0A0A0KYM4_CUCSA2.8e-1653.19Uncharacterized protein OS=Cucumis sativus GN=Csa_4G375140 PE=4 SV=1[more]
A0A0A0L399_CUCSA4.7e-1653.19Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374640 PE=4 SV=1[more]
A0A022RK91_ERYGU1.4e-0738.83Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a020713mg... [more]
BLAST of CmoCh16G002910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125953|ref|XP_008462936.1|1.4e-2665.05PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo][more]
gi|700199436|gb|KGN54594.1|6.1e-1754.26hypothetical protein Csa_4G374620 [Cucumis sativus][more]
gi|700199440|gb|KGN54598.1|4.0e-1653.19hypothetical protein Csa_4G375140 [Cucumis sativus][more]
gi|700199438|gb|KGN54596.1|6.7e-1653.19hypothetical protein Csa_4G374640 [Cucumis sativus][more]
gi|604335385|gb|EYU39310.1|2.0e-0738.83hypothetical protein MIMGU_mgv1a020713mg, partial [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002910.1CmoCh16G002910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 181..187
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002910CmaCh16G002710Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002910ClCG10G009580Watermelon (Charleston Gray)cmowcgB273
CmoCh16G002910Lsi03G009680Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G002910MELO3C032874.2Melon (DHL92) v3.6.1cmomedB342
CmoCh16G002910Bhi11G000863Wax gourdcmowgoB0405
CmoCh16G002910Carg19730Silver-seed gourdcarcmoB0402
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002910Cucurbita moschata (Rifu)cmocmoB096
CmoCh16G002910Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002910Cucurbita maxima (Rimu)cmacmoB133
CmoCh16G002910Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002910Watermelon (97103) v1cmowmB287
CmoCh16G002910Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002910Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002910Cucurbita pepo (Zucchini)cmocpeB321
CmoCh16G002910Melon (DHL92) v3.6.1cmomedB317
CmoCh16G002910Melon (DHL92) v3.6.1cmomedB339
CmoCh16G002910Silver-seed gourdcarcmoB0509
CmoCh16G002910Watermelon (97103) v2cmowmbB316