CmaCh16G002260 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor
Location	Cma_Chr16 : 1037222 .. 1043046 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGATAATATATTAATTACAATAAAAGTAGGTTGCATAAGGAAGAAAGGAAGACAAAAAAAAAAAAAAAAAGAGTTTTTCTCTTCAGCGATTGGTAGCATAGGATCAAACAACTTTTCCTCCCTTTTCTTGTGTGCGCCCAATAACAGAGCTATTTTTTATGGGGGTCTGAGATTGTTACCGGGATTGTCTCAAGGGTTTATATGTTTTTTTTAATGCTTCTGTTTTCACCACATGTTATATGTGGTGTTTGCTCTCTTTCTTAATATATATACTAGATTATTTTTCATATGCATCTGCACATGACTTATTCAATTTTTTCCTTTCTTGTTTTCAATTCATATCAAATGAATATTATAATTTGAATAATTAAGCATCTACTCTCTAAACTTCTAGAGTAAGAATCGATTAACGTTTCAAGAGATATGAAATCACTTAGAAACGCTTCGTTAAACACTTGGAAAGTCGATCCAAACATACTCTAAATTCAGTCGATTAACAACGATTCAAACTTAACTTAGTAGTAAGACATTAGTTATCATGTCAAAGATGGATGTTCTATTCTCGTTCAGCTATTGTTGAACTCGAAAAGGAAAAAAAAATGCACAAATCAACTTAATTTATGTCGTACCTGAAGTACAATTTAAACATGGCTTGGATAGTCAAGCACTTGTCAGCTGAGAGATTAGATATCAGATACTTGAATTTCGACTCCTATATGCAATGTAGTATATACGCATAGATTATATAATTTTATCATGAGCAAGTGAATACAAAAGGCTTAGACAAAGTCAGATTCGAGAAAAGTCAAGTTAATTACCGATTGATGTGCTCGGCCATCAGTCAGGACATTTATCAAACAGATTAGTAGCAATTCTTCTTGCTTCGGCTACATTTTCTCCCTGCCGTTACCACCATATCTTGCGCACCGACACACTTTCAGTATCATTCTCTCCTCATCGCGAAAGAGAAATTTATAGAAAAGAGAAAAATGTACCGATCGACGAGCTGGAACCGTTCTCCAATGAATACTACTCGCATTCGGCCCCGTCCTCGAAGTCAGGGCAGGCGTCGCGATTGTGCTCGTCCTTTGACGGCAATGAGCTGCCAATGAATGATCCGGTCGCCGAGATGGTGAAGCGAGAGAAAGCGCGAGTCAAGTTCGCCGAATCTGCCGTTCATTTGATTCCGCTCGTTTTGCTTCTCTGCACCATTGTTTTCTGTTCATCTCAAATACAGGTAAGTGAAGATCCGCAGGTAGAATTCGAATTCTTCTCCTTGGAATCTTTCCTTCCCAGCATTGATTTTTCCTGTAAATGAAAGAAAATTTCCCTTTCTATAACTTAAAGCATTCCACTAATCCATCAAATTAATCTATTCCTTTCCTAAAGAAAAACAAATTGTTAATTTACACCGACTCCAAATTTTAAGAATTATAATTTTTTATTTTTATTTTTTACGTGTAAACTGAACTTGACAGATTTTTTAGTTCAATGAATCTCTTATTTAAAATATATATATATATACCAAAATTATGAGCTAAACCTCACAATAAAATGAATATTTTGAGATAGATTTAAAATAAAAAGATTATGAGTTAGATTTAAAATAAAAATAAATTTGAGATGGATTAAACTATACTATAAGCATTTTTATGAAAAACATTATAAATTTAGTTTTCTTTTTAACTTTAAATATTATTTTATGAGATAAATTCTTGACCATTTAAAATTTTTAAAATTAATTATTCTATTAAATATAAATATAAATATACATTTTATGTATAATGCGAAATTTTGAGTCCAAAATATCAAATGAATTATAGAAAATTTGATCGCTATAAGAAGTGGCAGCGGCGGCGATGGCGGTGATAGTCCAATTCAAAAATCGAATTCTCCACCTCGTGTCGGTGGTGGAAAATCTGATCCTCAGTTTGAAACTTTAGTTCGAGACATGTCATTAAAGTTCTTGAATAAGAAAGGATGGCACACTGACAGTCTCAGAATATAGAGAACGTGTGGGAAGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTACGCGAGCAAATCCATGAGGAGAAGGAGGCCAAGAGTTTCGTCTTCTCCAAGATCTGGCCGGCCTCGATTCGTATGTTTTATCTTCTATATTGTTGTTAACCGTTTTAATTATGCATTTGATTCATAGTCTATAAGTTTCAAACCCGATTCAATCTCTGAATAGATGAGGATTGAAAACGTTGCGTAGTGTTAAAGATATTTAGTAATAAATTATAGTGTACCATATATATTATATTTGATATTCTATTATAAGACAAATATTAGATATTTGCCTTATTAATATAGATATCTTTTCCTTTTATTGTTATTTTCATTTATTACTCTTCCCATATTCTTGTAATTTATTTGATTATAAATAAGATAACTTTCCTACCATTAATCAAACATTATTATGGTATCAGAGCGTTCTCGGTTTAACAACACAGATTCTTTCTTTTCAATAGCTTTTGAATCCTCTAATCTTCTTCTCATCCACCCCTACTTGGCTTTGACGCTTCTTCTCCACCACTCCTACTTGGCTTTGACACCGTAGGGGCAGTCTTCATGGCTGCCACAGGCGGAGCCGATTGATTACTCTTCGGCTCCACCCTATTGACCTCCAAATCACCTTTCGTCATACTCTGTACATACAACCTCATTTTTTCCAACACAAACGGTTTTCTCCTTGGCCAATATAGTCTCTCTCATTTTCTTCCCAATCAACCCTTCATCTTTCTCAGAAACCCTAATCTCAGAATCCTCATCCGTGTTATCTTCAGAAATATACGGAATCTCGACAAGTCCATCAACCTTTTGCAAATCTGGATGCCGCACTGGCCTCTTCGCCAACCAAGTTGCCATCGCCCTTCCTGCCAAAATTGGCTCCTTCACCCAACTAATGTGGCAACTCTTCCGACTGCCCATCTCGCCAAAATTAGCTCCTTTGCCCAATGTGGCGACTCTTCCGGCTTCAACATTGTCTTTGTCCCTTGCTCTAGGTTTTCCCCTTCTAGGGTTAAACATATTCTCACCAAAGCCAAGGCAGTATCGTTGCTAAGCGGGAATCCCTCTTCATGGGTTAGACATATTCTCGTCTAAGCCAAGGCAGCATCATCGCTAAGCGGCGATCCCTCTACAATTTTCAATGGCCAAAAAGGTGTTTCTCTACGCCTCCTCTAAACCAGGTTGTTGACATCTTCACGAAAAGTATTTCTCAACCTCTTTGAATTATTAAGATTCAAGTTTCACGTTCGTTTAAATCTGATGTTTAACTTGCGGTGGGGAGTTAAAAATATTTAGTAATAAATTATAGTTTACCATATATTATATTTAATATTTTATTATAAGACAAATATCTAATATTTACATTTTCTTCATATTTTTATAATTTATTTGATTATAAATAACATAATTTTCCTCCTGCGCTTTAAACATTTTTCCAGATTAGGGTTAGGACAAGACTATGTTGGTTTGAGCAATATTTAAATTCTGGACGATATGGCTTTTACAGGAAGCAGAAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACATCTACTGCTCCGGCTGCCACTGAACCATCTAGTTCCAAGGTACAGTTGCACTCGCTGTTAATTTGTGTGCTTTGGCTATCTCTTCGTGGTGCTCAATTATGACTTTTTTTGTTGCTTTCTTGTGTTGTTTCTGCAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATTATTCGGCAGCGTGAGCAACAAGCTCTTGCACGCGTAAAGAACAATCCTATTCCGATGGCTATGATTCGCAAGACTGTAAGTTCATTTTTTCCTTTGTGCTTTTTTTCCTCCTTACATCCCTTTAACCACTATCAAGTTCTAGAACTTTTACTGTTCTAACACGGGCTATGGAAATTATATTGAAATTTCCCTTTTCCATTCATTATTTTCTTGAGAAAATTTTTGAACGATGTTCATGAACACTTTGTGGTAAAGAAAGCTGGTGGCTTATCTTAATTCCAAGTTATCCTTTGAGTTGATGTAATGGATTTCTCTGCATTTCTCACCCTGTCGATAGGAGCTAGAGATGAATCTATGATCAGAAAGTTTCTTTCGGTATATCTTCATGACTAGTCAATCGTGGCAAAAGTGGCAGCTTGTTGATAAGAAATCAATCCAAGAGAAAGCTTTGATACCAAATGATAAGGAATCACTACAAGGGAAATAAGATTCGTATTACCTTGTTGATCGATACCAAATGATAAGGAATCACTACAAGGAAATAAGATTCGTATTACCTTGTCAATCGAATATCTCAAGGTAAGAACACTTATTTGAAATTCGAATCACTCTACAAGCAAGATGATCATGTCTAACTTAAATGATTCTAAACATGCAATCTAAACTATATAGAATTGCAAGGAAACTTAGTCATTTGCTAAAGGAAAGCACAAATGCTCATTTTCTGCATTTGTCAAGTCTCCTTACAAATACAACATACATCGTTCTATCTTGAGCCTAAAGCTCTGATACCAAATGATAAGGAATAAGAGATTTCCCTTGGGTTGATTCCTTATCACATGTTAAACAATTCCCCTGACAAATAATGAACTGCCATATCAAGAATGTTCCTGTACAATAATTTTCATTCTTGTAATAGAATCTCAGTTTATCTCATGATCGTATTATCTGCAAGCTCTTGTTTGACTTGAAAAATAGATCTGAGGTATTTTCTTCTTTAAAAATATATTAGGTTGAAGCGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGATGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGATTCTTCTCCAGAAAGGGAGTATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAATCATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAATCATGATCGTGACAAGAGTTCAAAACGTGATGTTCGTTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATATGAATGAGAGGGATCGTGATAGAGGCTCAAAATTTGATCAGTCAGATCGAAAGACGCCCAAAAGAAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTCAAAGAGAGACAGAGATTCTTATACTCGCAATGAAAAGGACAGTAGAAGAGTGGGGGAATCAAGAACTTATGAACCGAATGCTTCTAAAACTCCTTTCGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGAGCGTGCAGCCAGGCTGAGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGTGGATGATGCACTGGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGGAGGGCATACTGTTCACAGGGTAAATCTGAAATTGAAGCCAACGCTTTTAGAACGGTAATGCACATCACTTGTATACTTTGCTTGTGTTTATTGTTTAACAGCATCCAATGTGATCCAAGTCATGTTGATCACATTCATATATGGTTTGTTTAAATTAAATTGCTGATTTTTTTCTAATGATACTAAATTTAT

mRNA sequence

ATGAAGTCAGGACATTTATCAAACAGATTAGTAGCAATTCTTCTTGCTTCGGCTACATTTTCTCCCTGCCGTTACCACCATATCTTGCGCACCGACACACTTTCAGTATCATTCTCTCCTCATCGCGAAAGAGAAATTTATAGAAAAGAGAAAAATGTACCGATCGACGAGCTGGAACCGTTCTCCAATGAATACTACTCGCATTCGGCCCCGTCCTCGAAGTCAGGGCAGGCGTCGCGATTGTGCTCGTCCTTTGACGGCAATGAGCTGCCAATGAATGATCCGGTCGCCGAGATGGTGAAGCGAGAGAAAGCGCGAGTCAAGTTCGCCGAATCTGCCGTTCATTTGATTCCGCTCGTTTTGCTTCTCTGCACCATTGTTTTCTGTTCATCTCAAATACAGGTAAGTGAAGATCCGCAGTCTCAGAATATAGAGAACGTGTGGGAAGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTACGCGAGCAAATCCATGAGGAGAAGGAGGCCAAGAGTTTCGTCTTCTCCAAGATCTGGCCGGCCTCGATTCGTATGAAGCAGAAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACATCTACTGCTCCGGCTGCCACTGAACCATCTAGTTCCAAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATTATTCGGCAGCGTGAGCAACAAGCTCTTGCACGCGTAAAGAACAATCCTATTCCGATGGCTATGATTCGCAAGACTGTTGAAGCGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGATGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGATTCTTCTCCAGAAAGGGAGTATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAATCATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAATCATGATCGTGACAAGAGTTCAAAACGTGATGTTCGTTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATATGAATGAGAGGGATCGTGATAGAGGCTCAAAATTTGATCAGTCAGATCGAAAGACGCCCAAAAGAAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTCAAAGAGAGACAGAGATTCTTATACTCGCAATGAAAAGGACAGTAGAAGAGTGGGGGAATCAAGAACTTATGAACCGAATGCTTCTAAAACTCCTTTCGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGAGCGTGCAGCCAGGCTGAGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGTGGATGATGCACTGGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGGAGGGCATACTGTTCACAGGGTAAATCTGAAATTGAAGCCAACGCTTTTAGAACGGTAATGCACATCACTTGTATACTTTGCTTGTGTTTATTGTTTAACAGCATCCAATGTGATCCAAGTCATGTTGATCACATTCATATATGGTTTGTTTAAATTAAATTGCTGATTTTTTTCTAATGATACTAAATTTAT

Coding sequence (CDS)

ATGAAGTCAGGACATTTATCAAACAGATTAGTAGCAATTCTTCTTGCTTCGGCTACATTTTCTCCCTGCCGTTACCACCATATCTTGCGCACCGACACACTTTCAGTATCATTCTCTCCTCATCGCGAAAGAGAAATTTATAGAAAAGAGAAAAATGTACCGATCGACGAGCTGGAACCGTTCTCCAATGAATACTACTCGCATTCGGCCCCGTCCTCGAAGTCAGGGCAGGCGTCGCGATTGTGCTCGTCCTTTGACGGCAATGAGCTGCCAATGAATGATCCGGTCGCCGAGATGGTGAAGCGAGAGAAAGCGCGAGTCAAGTTCGCCGAATCTGCCGTTCATTTGATTCCGCTCGTTTTGCTTCTCTGCACCATTGTTTTCTGTTCATCTCAAATACAGGTAAGTGAAGATCCGCAGTCTCAGAATATAGAGAACGTGTGGGAAGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTACGCGAGCAAATCCATGAGGAGAAGGAGGCCAAGAGTTTCGTCTTCTCCAAGATCTGGCCGGCCTCGATTCGTATGAAGCAGAAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACATCTACTGCTCCGGCTGCCACTGAACCATCTAGTTCCAAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATTATTCGGCAGCGTGAGCAACAAGCTCTTGCACGCGTAAAGAACAATCCTATTCCGATGGCTATGATTCGCAAGACTGTTGAAGCGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGATGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGATTCTTCTCCAGAAAGGGAGTATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAATCATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAATCATGATCGTGACAAGAGTTCAAAACGTGATGTTCGTTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATATGAATGAGAGGGATCGTGATAGAGGCTCAAAATTTGATCAGTCAGATCGAAAGACGCCCAAAAGAAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTCAAAGAGAGACAGAGATTCTTATACTCGCAATGAAAAGGACAGTAGAAGAGTGGGGGAATCAAGAACTTATGAACCGAATGCTTCTAAAACTCCTTTCGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGAGCGTGCAGCCAGGCTGAGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGTGGATGATGCACTGGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGGAGGGCATACTGTTCACAGGGTAAATCTGAAATTGAAGCCAACGCTTTTAGAACGGTAATGCACATCACTTGTATACTTTGCTTGTGTTTATTGTTTAACAGCATCCAATGTGATCCAAGTCATGTTGATCACATTCATATATGGTTTGTTTAA

Protein sequence

MKSGHLSNRLVAILLASATFSPCRYHHILRTDTLSVSFSPHREREIYRKEKNVPIDELEPFSNEYYSHSAPSSKSGQASRLCSSFDGNELPMNDPVAEMVKREKARVKFAESAVHLIPLVLLLCTIVFCSSQIQVSEDPQSQNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESGLAVGKGSNSDGFKSLETLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDSSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRVGESRTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFRTVMHITCILCLCLLFNSIQCDPSHVDHIHIWFV

Homology

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BLAST of CmaCh16G002260 vs. Swiss-Prot
Match: CWC25_MOUSE (Pre-mRNA-splicing factor CWC25 homolog OS=Mus musculus GN=Cwc25 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-10
Identity = 121/434 (27.88%), Postives = 203/434 (46.77%), Query Frame = 1


Query: 133 IQVSEDPQS-QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQ 192
           ++ S  PQ+ +N+E VW+AEQKHEAE+KK++EL+ ++ EE+  +          +++ K+
Sbjct: 8   LKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKE 67

Query: 193 KRLDFLYESGLAVGKGSNSDGFKSLETLPTTSTAPAATEP----SSSKEAAAPGALFEDK 252
           ++LD++Y+     G G   +  + L   P         E      SS+    PG++F   
Sbjct: 68  EKLDWMYQ-----GPGGMVNRDEYLLGRPIDKYVFEKMEEREAGCSSETGLLPGSIF--A 127

Query: 253 PHSAN---DAWRKLHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVE---AEKHKDKNP 312
           P  AN   D   K+  DPL IIR++E++    V NNP+ M  I++ ++    +K K K  
Sbjct: 128 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK 187

Query: 313 DDKRERMKHRHSKSKRRKDSSPEREYDSESASPERQRRNHDSESASP--ERQRRNHDRDK 372
           + K++  KH+H  S     SS + +  S++ S ++   +    S  P    Q R+ DR++
Sbjct: 188 EKKKKHRKHKHRSSSSGGSSSEDEQ--SQARSQKKMANSFPVLSKVPGYGLQVRDSDRNR 247

Query: 373 SSKRDVRSYSEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDSSKRDR 432
             +    S  E R  K    N R R        S + T +  P D     R    S+R R
Sbjct: 248 GLQ---GSLGEQRAIKN---NSRSRSSSPPRHASKKSTKEERPRD----RRSRSPSRRSR 307

Query: 433 DSYTRNEKDSRRVGESRTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFH 492
            S   ++  + +V       P+  K  ++ RH       KLS EE   +  EM ++A++ 
Sbjct: 308 -SPRPSKPHTSKVNRKERDSPSPKKEAYQRRHASGY-TRKLSAEELERKRQEMMENAKWR 367

Query: 493 EEQRWRRLKKAAVDDALEAEQNAVPS-SRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYC 552
           EE+R   LK+ A +D  E     + S S  FL   +      E   +S++E+ ++R  + 
Sbjct: 368 EEERLNTLKRHAREDEREHRLERLDSRSGKFLHRMK-----LESASTSSLEDRVKRNIHS 415

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BLAST of CmaCh16G002260 vs. Swiss-Prot
Match: CWC25_HUMAN (Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens GN=CWC25 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.5e-10
Identity = 121/431 (28.07%), Postives = 203/431 (47.10%), Query Frame = 1


Query: 133 IQVSEDPQS-QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQ 192
           ++ S  PQ+ +N+E VW+AEQKHEAE+KK++EL+ ++ EE+  +          +++ K+
Sbjct: 8   LKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKE 67

Query: 193 KRLDFLYESGLAVGKGSNSDGFKSLETLPTTSTAPAATEPS----SSKEAAAPGALFEDK 252
           ++LD++Y+     G G   +  + L   P         E      SS+    PG++F   
Sbjct: 68  EKLDWMYQ-----GPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIF--A 127

Query: 253 PHSAN---DAWRKLHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVE---AEKHKDKNP 312
           P  AN   D   K+  DPL IIR++E++    V NNP+ M  I++ ++    +K K K  
Sbjct: 128 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK 187

Query: 313 DDKRERMKHRHSKSKRRKDSSPEREYDSESASPERQRRNHDSESASP----ERQRRNHDR 372
           + K++  KH+H  S   + SS     D  SA   +++  + S   S       Q RN DR
Sbjct: 188 EKKKKHKKHKHRSSSSDRSSSE----DEHSAGRSQKKMANSSPVLSKVPGYGLQVRNSDR 247

Query: 373 DKSSKRDVRSYSEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDS--- 432
           ++  +  +   +E +R     M    R R S      R   K++  +  + +R   S   
Sbjct: 248 NQGLQGPLT--AEQKRGHG--MKNHSRSRSSS-HSPPRHASKKSTREAGSRDRRSRSLGR 307

Query: 433 -SKRDRDSYTRNEKDSRR-VGESRTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEM 492
            S+  R S   N K +RR  G++R+  P+  K  ++ RH       KLS EE   +  EM
Sbjct: 308 RSRSPRPSKLHNSKVNRRETGQTRS--PSPKKEVYQRRHAPGY-TRKLSAEELERKRQEM 367

Query: 493 QQDAEFHEEQRWRRLKKAAVDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESI 544
            ++A++ EE+R   LK+ A D+  E     + S         K     E   +S++E+ +
Sbjct: 368 MENAKWREEERLNILKRHAKDEEREQRLEKLDSRDGKFIHRMK----LESASTSSLEDRV 415

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BLAST of CmaCh16G002260 vs. TrEMBL
Match: A0A0A0KU62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025080 PE=4 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 3.1e-151
Identity = 319/416 (76.68%), Postives = 344/416 (82.69%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKLDELR+QI EEKE + F   +   A +  KQ+RLDFLYESG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQE-QAGLVPKQERLDFLYESG 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSANDAWRKLHSD 261
           LAVGK S+SDGFKSLETLP++STA AATEPSSSKEAA PGALFEDKPHSAND WRKLHSD
Sbjct: 77  LAVGKASSSDGFKSLETLPSSSTAAAATEPSSSKEAAVPGALFEDKPHSANDTWRKLHSD 136

Query: 262 PLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDS 321
           PLLIIRQREQQALARVKNNPI MAMIRKTVE EKHKDKNPDDKRER KHRHSKSKR KDS
Sbjct: 137 PLLIIRQREQQALARVKNNPIQMAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDS 196

Query: 322 SPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNE 381
           SPER+Y              DSE  SPERQRR HD DKSS+ D  S+SEDRRSK +  NE
Sbjct: 197 SPERDY--------------DSEDVSPERQRRKHDHDKSSRHDGHSHSEDRRSKAETKNE 256

Query: 382 RDRDRGSK------FDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRVGES 441
           RDRDRGSK      +DQSDRKT K NPHD  A +R+HD SKRDRDSY  N++DSRRVGE 
Sbjct: 257 RDRDRGSKYAARTSYDQSDRKTFKSNPHD-SAADRYHDRSKRDRDSYATNDRDSRRVGEL 316

Query: 442 RTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVDDA 501
           R YE NAS+TP E RH+HRRP TKLSEEERAARL EMQQDAE HEEQR++RLKKA  DDA
Sbjct: 317 RYYESNASETPNESRHRHRRPTTKLSEEERAARLREMQQDAELHEEQRFKRLKKADEDDA 376

Query: 502 LEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFR 552
           LEA+QNAVPSSRNFLD AQKRMY AEKGGSSTIEESIRRR Y SQGKS+IEANAFR
Sbjct: 377 LEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTIEESIRRRTYYSQGKSQIEANAFR 416

[Close]

BLAST of CmaCh16G002260 vs. TrEMBL
Match: W9R253_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017969 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.1e-78
Identity = 210/414 (50.72%), Postives = 266/414 (64.25%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKL+ELR+QI EEKE   F   +   A +  KQ+RLDFLYESG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLEELRKQILEEKERAEFRQLQE-QAGLVPKQERLDFLYESG 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSSKEAAA----PGALFEDKPHSANDAWRK 261
           LAVGK S S+GFK+LE  P    AP+++  ++S +AA+    PGALFE+KP SANDAWRK
Sbjct: 77  LAVGKASASEGFKALEAFPKPGDAPSSSASAASNQAASSSAVPGALFEEKPQSANDAWRK 136

Query: 262 LHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKR 321
           LHSDPLL+IRQREQ ALAR+KNNP+ MA IRK+VE +  K +  D+K  R KHR S SK 
Sbjct: 137 LHSDPLLMIRQREQDALARIKNNPVQMARIRKSVEGKGKKSR--DEKEHRKKHRDSSSKH 196

Query: 322 RKDSSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTD 381
           +K SS  +E   E     R+  NHD  S S E +R++    KSS  D  S SED   +  
Sbjct: 197 QKHSSSGKE---EERRKSRKSANHDKHSDSEEERRKSR---KSSNHDKHSDSEDESRRKS 256

Query: 382 YMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRVGESRT 441
             +ER+  R SK+   +     ++  +   + RH      DR    +   + R       
Sbjct: 257 SRSERNGYRSSKY--KEHSLGGQSGPETVKDSRHFVKGNNDRSEKEKYPTEDRS------ 316

Query: 442 YEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVDDALE 501
                     E  ++ R  A KLSEEERAARL EMQ DAE HEEQRW+RLKKA VDDA +
Sbjct: 317 ----------ESHYRRRNVAPKLSEEERAARLREMQMDAEVHEEQRWKRLKKAEVDDARQ 376

Query: 502 AEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFR 552
           A ++A+   +NFLD AQK +YGAE+GGSS+I ES+RRR + SQG+SE + NAFR
Sbjct: 377 ASRDAISKGKNFLDAAQKNVYGAEEGGSSSIAESVRRRTHYSQGRSE-QGNAFR 402

[Close]

BLAST of CmaCh16G002260 vs. TrEMBL
Match: A0A0D2PL17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G008200 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.9e-78
Identity = 212/424 (50.00%), Postives = 271/424 (63.92%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKL+ELR+QIHEE+E   F   +   A +  KQ+RLDFLY+SG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLEELRKQIHEERERSEFRLLQE-QAGLVPKQERLDFLYDSG 76

Query: 202 LAVGKGSNSD--------GFKSLE-TLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSAN 261
           LAVGKG++S         GFK+LE  LP +    A T+ ++++ ++APGALFEDKPHSAN
Sbjct: 77  LAVGKGASSSAAGGSGGGGFKALEEALPGSK---AGTDGNANQSSSAPGALFEDKPHSAN 136

Query: 262 DAWRKLHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRH 321
           D WRKLHSDPLL+IRQREQ+ALAR+KNNP+ MAMIRK+V  +K K+K+PD K  R KH  
Sbjct: 137 DTWRKLHSDPLLMIRQREQEALARIKNNPVQMAMIRKSVVEKKQKEKSPDHKEHRKKHHR 196

Query: 322 SKSKRRKDSSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSS----KRDVRSY 381
           S SK RK SS +R   SE             +++  +++ +NH R +S      R   S 
Sbjct: 197 SSSKHRKHSSSKRHSYSE------------DDTSKEDKKDKNHHRKRSDYEGHYRKTESD 256

Query: 382 SEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKD 441
           SE    +T+   E    R  K+   D+   KR+ HD    +++   + R  D+    EKD
Sbjct: 257 SEHELKETE--REEKSHRRQKYGYDDQDVDKRS-HDKSKRDKYSSQAPRSIDADKNQEKD 316

Query: 442 SRRVGESRTYEPNASKTPFEPRHKHRRPAT-KLSEEERAARLSEMQQDAEFHEEQRWRRL 501
            R      T           PR   RR  + KLSEEERAARL EMQ+DAE HEEQRW+RL
Sbjct: 317 RRSYDHRDT----------GPRDNKRRGVSHKLSEEERAARLREMQEDAELHEEQRWKRL 376

Query: 502 KKAAVDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEA 552
           KKA  +DA EA  ++    +NFLD A + +YGAEKGGSSTIEES+RRRA+ SQG+ E E 
Sbjct: 377 KKAEENDAQEATLSSTSVGKNFLDAANRSIYGAEKGGSSTIEESVRRRAHYSQGRYESEG 411

[Close]

BLAST of CmaCh16G002260 vs. TrEMBL
Match: A0A0B0P730_GOSAR (Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 206/425 (48.47%), Postives = 272/425 (64.00%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKL+ELR+QIHEE+E   F   +   A +  KQ+RLDFLY+SG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLEELRKQIHEERERSEFRLLQE-QAGLVPKQERLDFLYDSG 76

Query: 202 LAVGKGSNSD--------GFKSLE-TLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSAN 261
           LAVGKG++S         GFK+LE  LP +    A T+ ++++ ++APGALFEDKPHSAN
Sbjct: 77  LAVGKGASSSAAGGSGGGGFKALEEALPGSK---AGTDGNANQSSSAPGALFEDKPHSAN 136

Query: 262 DAWRKLHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRH 321
           DAWRKLHSDPLL+IRQREQ+ALAR+KNNP+ MAMIRK+V  +K K+K+PD K  R KH  
Sbjct: 137 DAWRKLHSDPLLMIRQREQEALARIKNNPVQMAMIRKSVVEKKQKEKSPDHKEHRKKHHR 196

Query: 322 SKSKRRKDSSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDR 381
           S SK RK SS +R   SE  + +  +++ +      + +   H  +  S+ +++    + 
Sbjct: 197 SSSKHRKHSSSKRHSYSEDDTSKEDKKDKNHHRKRSDYEGHYHRTESDSEHELKETEREE 256

Query: 382 RSKTDYMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRV 441
           +S           R  K+   D+   KR+ HD    +++   + R  D+    EKD R  
Sbjct: 257 KS----------HRRQKYGYDDQDVDKRS-HDKSKRDKYSSQAPRSIDADKNQEKDLRSY 316

Query: 442 GESRTYEPNASKTPFEPRHKHRRPAT-KLSEEERAARLSEMQQDAEFHEEQRWRRLKKAA 501
               T           PR   RR  + KLSEEERAARL EMQ+DAE HEEQRW+RLKKA 
Sbjct: 317 DHRDT----------GPRDNKRRGVSHKLSEEERAARLREMQEDAELHEEQRWKRLKKAE 376

Query: 502 VDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFR 557
            +DA EA  ++    +NFLD A + +YGAEKGGSSTIEES+RRRA+ SQG+ E E NAFR
Sbjct: 377 ENDAREATLSSTSVGKNFLDAANRSIYGAEKGGSSTIEESVRRRAHYSQGRYESEGNAFR 416

[Close]

BLAST of CmaCh16G002260 vs. TrEMBL
Match: A0A0B0PCG0_GOSAR (Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 206/420 (49.05%), Postives = 270/420 (64.29%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKL+ELR+QIHEE+E   F   +   A +  KQ+RLDFLY+SG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLEELRKQIHEERERSEFRLLQE-QAGLVPKQERLDFLYDSG 76

Query: 202 LAVGKGSNSD--------GFKSLE-TLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSAN 261
           LAVGKG++S         GFK+LE  LP +    A T+ ++++ ++APGALFEDKPHSAN
Sbjct: 77  LAVGKGASSSAAGGSGGGGFKALEEALPGSK---AGTDGNANQSSSAPGALFEDKPHSAN 136

Query: 262 DAWRKLHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRH 321
           DAWRKLHSDPLL+IRQREQ+ALAR+KNNP+ MAMIRK+V  +K K+K+PD K  R KH  
Sbjct: 137 DAWRKLHSDPLLMIRQREQEALARIKNNPVQMAMIRKSVVEKKQKEKSPDHKEHRKKHHR 196

Query: 322 SKSKRRKDSSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDR 381
           S SK RK SS +R   SE  + +  +++ +      + +   H  +  S+ +++    + 
Sbjct: 197 SSSKHRKHSSSKRHSYSEDDTSKEDKKDKNHHRKRSDYEGHYHRTESDSEHELKETEREE 256

Query: 382 RSKTDYMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRV 441
           +S           R  K+   D+   KR+ HD    +++   + R  D+    EKD R  
Sbjct: 257 KS----------HRRQKYGYDDQDVDKRS-HDKSKRDKYSSQAPRSIDADKNQEKDLRSY 316

Query: 442 GESRTYEPNASKTPFEPRHKHRRPAT-KLSEEERAARLSEMQQDAEFHEEQRWRRLKKAA 501
               T           PR   RR  + KLSEEERAARL EMQ+DAE HEEQRW+RLKKA 
Sbjct: 317 DHRDT----------GPRDNKRRGVSHKLSEEERAARLREMQEDAELHEEQRWKRLKKAE 376

Query: 502 VDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFR 552
            +DA EA  ++    +NFLD A + +YGAEKGGSSTIEES+RRRA+ SQG+ E E NAFR
Sbjct: 377 ENDAREATLSSTSVGKNFLDAANRSIYGAEKGGSSTIEESVRRRAHYSQGRYESEGNAFR 411

[Close]

BLAST of CmaCh16G002260 vs. TAIR10
Match: AT2G44200.1 (AT2G44200.1 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-34
Identity = 154/419 (36.75%), Postives = 217/419 (51.79%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIE VW+AEQK EAEQKKL+ELR QI +E+E   F   +   A +  +Q+RL+FLY+SG
Sbjct: 17  RNIETVWKAEQKQEAEQKKLEELRLQILQERERSEFRALQE-QAGLIPRQERLEFLYDSG 76

Query: 202 LAVGKGSNS-DGFKSLETLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSANDAWRKLHS 261
           LAVGKGS S  G    +     + + A +  S   + +APGALFE+K  SAND+WRKLHS
Sbjct: 77  LAVGKGSASGSGVSFQKEEQPLAKSEAGSSASEKPDQSAPGALFEEKAQSANDSWRKLHS 136

Query: 262 DPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKD 321
           DPLL+IRQREQ+ALA++KNNP+ MA+IRK+VE EK K K+ D K  + KH+    K +K 
Sbjct: 137 DPLLLIRQREQEALAKIKNNPVKMALIRKSVE-EKGKGKDGDTKEHKKKHKRKSGKHQKQ 196

Query: 322 SSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMN 381
           SS  +  DSE  S E           +     R+++R +S   D+   S+ R S      
Sbjct: 197 SSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHYERPRS---DLEDESKGRES------ 256

Query: 382 ERDRDRGSKFDQSDRKTPKRNPHDYYAEERH---HDSSKR--DRDS-YTRNEKD-----S 441
            RDR    +  + D    +R  HD + E R     D SKR   RD+ Y R   D      
Sbjct: 257 -RDRHYEKRRSELDDGHKRRERHDTHYERRRSEMDDESKRRESRDNHYERRRSDLDDESK 316

Query: 442 RRVGESRTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKK 501
           RR    + +E   S    E + +  +   + S+ +   +    ++DA  +E+ R R  K 
Sbjct: 317 RRESHDKHFERQRSDLDDEYKRRESQDKRRRSDIDDEPK----RRDARPNEKYRNRSPKG 376

Query: 502 AAVDDALEA-EQNAVPSSRNFLDTAQKRMY--GAEKGGSSTIEESIRRRAYCSQGKSEI 546
               + L++  Q         LD+ +   Y     KGGS   EE    R    Q  +E+
Sbjct: 377 GVERENLKSYGQEDKKRKAEDLDSGKPNEYQNRRRKGGSKLSEEERAARLKQMQMDAEV 419

[Close]

BLAST of CmaCh16G002260 vs. TAIR10
Match: AT2G44195.1 (AT2G44195.1 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor)

HSP 1 Score: 80.1 bits (196), Expect = 5.0e-15
Identity = 53/133 (39.85%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +N+E VW+AEQKHEAEQ+K++E  E    +++A            +  + +RL+FLY+  
Sbjct: 17  RNVEKVWKAEQKHEAEQEKIEERSEFRAIQEQA----------GLVPRRPERLEFLYDPE 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSSKEAAAPGALFED--KPHSANDAWRKLH 261
           LAV K          + + ++              A  PGALF+D  K HSAND+WRK H
Sbjct: 77  LAVAK----------QNVSSSRHGVLFQNQDQRARATIPGALFDDDDKRHSANDSWRKFH 129

Query: 262 SDPLLIIRQREQQ 273
           SDPLL+IRQ+EQ+
Sbjct: 137 SDPLLLIRQKEQE 129

[Close]

BLAST of CmaCh16G002260 vs. TAIR10
Match: AT5G61630.1 (AT5G61630.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-07
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 64  EYYSHSAPSSKSGQASRLCSSFDGNELPM-NDPVAEMVKREKARVKFAESAVHLIPLVLL 123
           E YS + P  K      +    D NELP  N+P  EMVK+EK+R KFAE+A+H+IP VLL
Sbjct: 12  EDYSSAPP--KGLWMGSVIGPLDENELPSYNNPPEEMVKKEKSRAKFAENAIHIIPFVLL 71

Query: 124 LCTIV 128
            C +V
Sbjct: 72  ACALV 74

[Close]

BLAST of CmaCh16G002260 vs. NCBI nr
Match: gi|659107773|ref|XP_008453851.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo])

HSP 1 Score: 555.1 bits (1429), Expect = 1.5e-154
Identity = 327/418 (78.23%), Postives = 349/418 (83.49%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKLDELR+QI EEKE + F   +   A +  KQ+RLDFLYESG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQE-QAGLVPKQERLDFLYESG 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSANDAWRKLHSD 261
           LAVGK S+SDGFKSLETLP++STA AATEPSSSKEAAAPGALFEDKPHSANDAWRKLHSD
Sbjct: 77  LAVGKASSSDGFKSLETLPSSSTAAAATEPSSSKEAAAPGALFEDKPHSANDAWRKLHSD 136

Query: 262 PLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDS 321
           PLLIIRQREQQALARVKNNPI MAMIRKTVE EKHKDKNPDDKRER KHRHSKSKR KDS
Sbjct: 137 PLLIIRQREQQALARVKNNPIQMAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDS 196

Query: 322 SPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNE 381
           SPER+Y              DSE ASPERQRR HD DKSS+ D  S+SEDRRSK D  NE
Sbjct: 197 SPERDY--------------DSEDASPERQRRKHDHDKSSRHDGHSHSEDRRSKADSKNE 256

Query: 382 RDRDRGSK------FDQSDRKTPKRNPHDYYAEERHHDSSK--RDRDSYTRNEKDSRRVG 441
           RDRDRGSK      +DQSDRKT K NP D  A +RHHD SK  RDRDS+  N+KDSRRVG
Sbjct: 257 RDRDRGSKYAARTSYDQSDRKTSKSNPRD-SAADRHHDRSKRDRDRDSHANNDKDSRRVG 316

Query: 442 ESRTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVD 501
           E R YE +AS+TP E RH+HRRP TKLSEEERAARL EMQQDAE HEEQRW+RLKKAA D
Sbjct: 317 EPRYYESHASETPNESRHRHRRPTTKLSEEERAARLREMQQDAELHEEQRWKRLKKAAED 376

Query: 502 DALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFR 552
           DALEA+QNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRR Y SQGKSEIEANAFR
Sbjct: 377 DALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRTYYSQGKSEIEANAFR 418

[Close]

BLAST of CmaCh16G002260 vs. NCBI nr
Match: gi|449458323|ref|XP_004146897.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus])

HSP 1 Score: 543.5 bits (1399), Expect = 4.5e-151
Identity = 319/416 (76.68%), Postives = 344/416 (82.69%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKLDELR+QI EEKE + F   +   A +  KQ+RLDFLYESG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQE-QAGLVPKQERLDFLYESG 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSSKEAAAPGALFEDKPHSANDAWRKLHSD 261
           LAVGK S+SDGFKSLETLP++STA AATEPSSSKEAA PGALFEDKPHSAND WRKLHSD
Sbjct: 77  LAVGKASSSDGFKSLETLPSSSTAAAATEPSSSKEAAVPGALFEDKPHSANDTWRKLHSD 136

Query: 262 PLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDS 321
           PLLIIRQREQQALARVKNNPI MAMIRKTVE EKHKDKNPDDKRER KHRHSKSKR KDS
Sbjct: 137 PLLIIRQREQQALARVKNNPIQMAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDS 196

Query: 322 SPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNE 381
           SPER+Y              DSE  SPERQRR HD DKSS+ D  S+SEDRRSK +  NE
Sbjct: 197 SPERDY--------------DSEDVSPERQRRKHDHDKSSRHDGHSHSEDRRSKAETKNE 256

Query: 382 RDRDRGSK------FDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRVGES 441
           RDRDRGSK      +DQSDRKT K NPHD  A +R+HD SKRDRDSY  N++DSRRVGE 
Sbjct: 257 RDRDRGSKYAARTSYDQSDRKTFKSNPHD-SAADRYHDRSKRDRDSYATNDRDSRRVGEL 316

Query: 442 RTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVDDA 501
           R YE NAS+TP E RH+HRRP TKLSEEERAARL EMQQDAE HEEQR++RLKKA  DDA
Sbjct: 317 RYYESNASETPNESRHRHRRPTTKLSEEERAARLREMQQDAELHEEQRFKRLKKADEDDA 376

Query: 502 LEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFR 552
           LEA+QNAVPSSRNFLD AQKRMY AEKGGSSTIEESIRRR Y SQGKS+IEANAFR
Sbjct: 377 LEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTIEESIRRRTYYSQGKSQIEANAFR 416

[Close]

BLAST of CmaCh16G002260 vs. NCBI nr
Match: gi|1009111497|ref|XP_015901238.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba])

HSP 1 Score: 301.6 bits (771), Expect = 3.0e-78
Identity = 211/418 (50.48%), Postives = 265/418 (63.40%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKH+AEQKKL+ELR+QI EE+E   F   +   A +  KQ+RL+FLYESG
Sbjct: 17  RNIENVWKAEQKHDAEQKKLEELRKQIQEERERSEFRLLQE-QAGLVPKQERLEFLYESG 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSS-KEAAAPGALFEDKPHSANDAWRKLHS 261
           LAVGKG  S+GFK+LE  P    AP+ +  S+S ++++ PGALFEDKP SAND+WRKLHS
Sbjct: 77  LAVGKGGASEGFKALEAFPKNDDAPSTSSASASMQQSSVPGALFEDKPQSANDSWRKLHS 136

Query: 262 DPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKD 321
           DPLL+IRQREQ+AL+R+KNNP+ MA+IRK+V+ +KHK K+ D K  R KH HS SK  + 
Sbjct: 137 DPLLMIRQREQEALSRIKNNPVQMAIIRKSVDEKKHKGKSHDKKEHRKKHHHSSSKHERH 196

Query: 322 SSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMN 381
           SS                      S + E +RR  D  K S  D  S SED   K     
Sbjct: 197 SS----------------------SHTIEVERRKPDHRKGSNYDKHSDSEDESHKKRSRG 256

Query: 382 ERDRDRGSKF------DQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRVGE 441
           ER+  R  K+       QSD +T K    D  A +R H+ S++ +       +  R   E
Sbjct: 257 ERNSYRDLKYRERSPGGQSDPETVKSGRQD--AVKRSHERSEQGQCP----SEQGRYTVE 316

Query: 442 SRTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVDD 501
           S+           E  HK R  A KLSEEERAA+L EMQ+DAE HEEQRW+RLKKA  DD
Sbjct: 317 SQR----------ESHHKRRYVAPKLSEEERAAKLREMQEDAELHEEQRWKRLKKAEEDD 376

Query: 502 ALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEI-EANAFR 552
           A EA ++ + S +NFL  A + +YGAEKGGSSTIEES+RRRAY SQG+S   E NAFR
Sbjct: 377 AREATRDGLSSGKNFLHAAHRSVYGAEKGGSSTIEESVRRRAYYSQGRSSASEGNAFR 395

[Close]

BLAST of CmaCh16G002260 vs. NCBI nr
Match: gi|703098936|ref|XP_010096517.1| (hypothetical protein L484_017969 [Morus notabilis])

HSP 1 Score: 300.1 bits (767), Expect = 8.7e-78
Identity = 210/414 (50.72%), Postives = 266/414 (64.25%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKHEAEQKKL+ELR+QI EEKE   F   +   A +  KQ+RLDFLYESG
Sbjct: 17  RNIENVWKAEQKHEAEQKKLEELRKQILEEKERAEFRQLQE-QAGLVPKQERLDFLYESG 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSSKEAAA----PGALFEDKPHSANDAWRK 261
           LAVGK S S+GFK+LE  P    AP+++  ++S +AA+    PGALFE+KP SANDAWRK
Sbjct: 77  LAVGKASASEGFKALEAFPKPGDAPSSSASAASNQAASSSAVPGALFEEKPQSANDAWRK 136

Query: 262 LHSDPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKR 321
           LHSDPLL+IRQREQ ALAR+KNNP+ MA IRK+VE +  K +  D+K  R KHR S SK 
Sbjct: 137 LHSDPLLMIRQREQDALARIKNNPVQMARIRKSVEGKGKKSR--DEKEHRKKHRDSSSKH 196

Query: 322 RKDSSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTD 381
           +K SS  +E   E     R+  NHD  S S E +R++    KSS  D  S SED   +  
Sbjct: 197 QKHSSSGKE---EERRKSRKSANHDKHSDSEEERRKSR---KSSNHDKHSDSEDESRRKS 256

Query: 382 YMNERDRDRGSKFDQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRVGESRT 441
             +ER+  R SK+   +     ++  +   + RH      DR    +   + R       
Sbjct: 257 SRSERNGYRSSKY--KEHSLGGQSGPETVKDSRHFVKGNNDRSEKEKYPTEDRS------ 316

Query: 442 YEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVDDALE 501
                     E  ++ R  A KLSEEERAARL EMQ DAE HEEQRW+RLKKA VDDA +
Sbjct: 317 ----------ESHYRRRNVAPKLSEEERAARLREMQMDAEVHEEQRWKRLKKAEVDDARQ 376

Query: 502 AEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEIEANAFR 552
           A ++A+   +NFLD AQK +YGAE+GGSS+I ES+RRR + SQG+SE + NAFR
Sbjct: 377 ASRDAISKGKNFLDAAQKNVYGAEEGGSSSIAESVRRRTHYSQGRSE-QGNAFR 402

[Close]

BLAST of CmaCh16G002260 vs. NCBI nr
Match: gi|1009172647|ref|XP_015867386.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba])

HSP 1 Score: 300.1 bits (767), Expect = 8.7e-78
Identity = 210/418 (50.24%), Postives = 264/418 (63.16%), Query Frame = 1


Query: 142 QNIENVWEAEQKHEAEQKKLDELREQIHEEKEAKSFVFSKIWPASIRMKQKRLDFLYESG 201
           +NIENVW+AEQKH+AEQKKL+ELR+QI EE+E   F   +   A +  KQ+RL+FLYESG
Sbjct: 17  RNIENVWKAEQKHDAEQKKLEELRKQIQEERERSEFRLLQE-QAGLVPKQERLEFLYESG 76

Query: 202 LAVGKGSNSDGFKSLETLPTTSTAPAATEPSSS-KEAAAPGALFEDKPHSANDAWRKLHS 261
           LAVGKG  S+GFK+LE  P    AP+ +  S+S ++++ PGALFEDKP SAND+WRKLHS
Sbjct: 77  LAVGKGGASEGFKALEAFPKNDDAPSTSSASASMQQSSVPGALFEDKPQSANDSWRKLHS 136

Query: 262 DPLLIIRQREQQALARVKNNPIPMAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKD 321
           DPLL+IRQREQ+AL+R+KNNP+ MA+IRK+V+ +KHK K+ D K  R KH HS SK  + 
Sbjct: 137 DPLLMIRQREQEALSRIKNNPVQMAIIRKSVDEKKHKGKSHDKKEHRKKHHHSSSKHERH 196

Query: 322 SSPEREYDSESASPERQRRNHDSESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMN 381
           SS                      S + E +RR  D  K S  D  S SED   K     
Sbjct: 197 SS----------------------SHTIEVERRKPDHRKGSNYDKHSDSEDESHKKRSRG 256

Query: 382 ERDRDRGSKF------DQSDRKTPKRNPHDYYAEERHHDSSKRDRDSYTRNEKDSRRVGE 441
           ER+  R  K+       QSD +T K    D  A +R H+ S++ +       +  R   E
Sbjct: 257 ERNSYRDLKYRERSPGGQSDPETVKNGRQD--AVKRSHERSEQGKCP----SEQGRYTVE 316

Query: 442 SRTYEPNASKTPFEPRHKHRRPATKLSEEERAARLSEMQQDAEFHEEQRWRRLKKAAVDD 501
           S+           E  HK R  A KLSEEERAA+L EMQ+DAE HEEQRW+RLKKA  DD
Sbjct: 317 SQR----------ELHHKRRYVAPKLSEEERAAKLREMQEDAELHEEQRWKRLKKAEEDD 376

Query: 502 ALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESIRRRAYCSQGKSEI-EANAFR 552
           A EA ++ +   +NFL  A + +YGAEKGGSSTIEES+RRRAY SQG+S   E NAFR
Sbjct: 377 AREATRDGLSGGKNFLHAAHRSVYGAEKGGSSTIEESVRRRAYYSQGRSSASEGNAFR 395

The following BLAST results are available for this feature:

BLAST of CmaCh16G002260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CWC25_MOUSE	2.0e-10	27.88	Pre-mRNA-splicing factor CWC25 homolog OS=Mus musculus GN=Cwc25 PE=2 SV=2	[more]
CWC25_HUMAN	3.5e-10	28.07	Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens GN=CWC25 PE=1 SV=1	[more]

BLAST of CmaCh16G002260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU62_CUCSA	3.1e-151	76.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025080 PE=4 SV=1	[more]
W9R253_9ROSA	6.1e-78	50.72	Uncharacterized protein OS=Morus notabilis GN=L484_017969 PE=4 SV=1	[more]
A0A0D2PL17_GOSRA	7.9e-78	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G008200 PE=4 SV=1	[more]
A0A0B0P730_GOSAR	1.3e-77	48.47	Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1	[more]
A0A0B0PCG0_GOSAR	1.8e-77	49.05	Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1	[more]

BLAST of CmaCh16G002260 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44200.1	2.2e-34	36.75	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing fact...	[more]
AT2G44195.1	5.0e-15	39.85	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing fact...	[more]
AT5G61630.1	1.7e-07	49.23	unknown protein	[more]

BLAST of CmaCh16G002260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107773\|ref\|XP_008453851.1\|	1.5e-154	78.23	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo]	[more]
gi\|449458323\|ref\|XP_004146897.1\|	4.5e-151	76.68	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus]	[more]
gi\|1009111497\|ref\|XP_015901238.1\|	3.0e-78	50.48	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba]	[more]
gi\|703098936\|ref\|XP_010096517.1\|	8.7e-78	50.72	hypothetical protein L484_017969 [Morus notabilis]	[more]
gi\|1009172647\|ref\|XP_015867386.1\|	8.7e-78	50.24	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019339	CIR_N_dom
IPR022209	CWC25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002260.1	CmaCh16G002260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain	PFAM	PF10197	Cir_N	coord: 142..171 score: 1.
IPR022209	Pre-mRNA splicing factor	PFAM	PF12542	CWC25	coord: 190..281 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 147..174 scor
None	No IPR available	PANTHER	PTHR16196	CELL CYCLE CONTROL PROTEIN CWF25	coord: 142..552 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002260	Cucsa.094000	Cucumber (Gy14) v1	cgycmaB0196
CmaCh16G002260	Cla010700	Watermelon (97103) v1	cmawmB313
CmaCh16G002260	Csa4G025080	Cucumber (Chinese Long) v2	cmacuB332
CmaCh16G002260	MELO3C017634	Melon (DHL92) v3.5.1	cmameB304
CmaCh16G002260	ClCG07G017100	Watermelon (Charleston Gray)	cmawcgB302
CmaCh16G002260	CSPI04G04220	Wild cucumber (PI 183967)	cmacpiB337
CmaCh16G002260	CmoCh04G003880	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002260	CmoCh16G002450	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002260	Lsi07G001280	Bottle gourd (USVL1VR-Ls)	cmalsiB323
CmaCh16G002260	Cp4.1LG14g05340	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002260	Cp4.1LG01g03440	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002260	MELO3C017634.2	Melon (DHL92) v3.6.1	cmamedB355
CmaCh16G002260	CsaV3_4G004310	Cucumber (Chinese Long) v3	cmacucB0387
CmaCh16G002260	Cla97C07G144130	Watermelon (97103) v2	cmawmbB352
CmaCh16G002260	Bhi01G001995	Wax gourd	cmawgoB0440
CmaCh16G002260	CsGy4G004150	Cucumber (Gy14) v2	cgybcmaB493
CmaCh16G002260	Carg16767	Silver-seed gourd	carcmaB1206
CmaCh16G002260	Carg08041	Silver-seed gourd	carcmaB0526

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G002260	CmaCh04G003680	Cucurbita maxima (Rimu)	cmacmaB351

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002260	Wax gourd	cmawgoB0410
CmaCh16G002260	Bottle gourd (USVL1VR-Ls)	cmalsiB301
CmaCh16G002260	Silver-seed gourd	carcmaB0995
CmaCh16G002260	Cucumber (Chinese Long) v3	cmacucB0405
CmaCh16G002260	Watermelon (97103) v2	cmawmbB329