Cla010700 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010700
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 28940200 .. 28940472 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCGATCGGCCAGCTGGAACCGATTCTCCGACGAATACTACTCCCATTCGTCCCCGTCCCCGGCCCCGTCCTCGAAGCCAGGGCAGTCGTTGCGATTGTCGTCCTCATTTGATCACGGGAATGAGCTCCCAACCAATGATCCGGTCGCCGAAATGGTGAAGCGAGAGAAAGCACGAGTCAAGTTCGCGGAAACTGCTGTTCATGTGATTCCGCTTGTTTTGCTTCTCTGCGCCGTTGTTCTGTGGTTCTTCTCCAATCCAGGTAAGTGA

mRNA sequence

ATGTACCGATCGGCCAGCTGGAACCGATTCTCCGACGAATACTACTCCCATTCGTCCCCGTCCCCGGCCCCGTCCTCGAAGCCAGGGCAGTCGTTGCGATTGTCGTCCTCATTTGATCACGGGAATGAGCTCCCAACCAATGATCCGGTCGCCGAAATGGTGAAGCGAGAGAAAGCACGAGTCAAGTTCGCGGAAACTGCTGTTCATGTGATTCCGCTTGTTTTGCTTCTCTGCGCCGTTGTTCTGTGGTTCTTCTCCAATCCAGGTAAGTGA

Coding sequence (CDS)

ATGTACCGATCGGCCAGCTGGAACCGATTCTCCGACGAATACTACTCCCATTCGTCCCCGTCCCCGGCCCCGTCCTCGAAGCCAGGGCAGTCGTTGCGATTGTCGTCCTCATTTGATCACGGGAATGAGCTCCCAACCAATGATCCGGTCGCCGAAATGGTGAAGCGAGAGAAAGCACGAGTCAAGTTCGCGGAAACTGCTGTTCATGTGATTCCGCTTGTTTTGCTTCTCTGCGCCGTTGTTCTGTGGTTCTTCTCCAATCCAGGTAAGTGA

Protein sequence

MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKARVKFAETAVHVIPLVLLLCAVVLWFFSNPGK

Homology

[Close]

BLAST of Cla010700 vs. TrEMBL
Match: A0A0A0KZ80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025085 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.4e-36
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGN-ELPTNDPVAEMVKREKA 60
          MYRS SWNRFSDEYYSHS    APSSKPGQSLRLSSSFDHGN ELPTNDPV+EMVKREKA
Sbjct: 1  MYRSVSWNRFSDEYYSHS----APSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60

Query: 61 RVKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          RVKFAETAVHVIP VLL+CA+VLWFFSNP
Sbjct: 61 RVKFAETAVHVIPFVLLICAIVLWFFSNP 85

[Close]

BLAST of Cla010700 vs. TrEMBL
Match: I1LCI6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G193700 PE=4 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKAR 60
          M+RSASWNRFSD+Y+ H     A +S P    R S S   GN LPT DP+AE+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 VKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          VKFAE AVHVIPLVL++CA++LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIICAIILWLFSNP 83

[Close]

BLAST of Cla010700 vs. TrEMBL
Match: A0A0B2RE95_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034027 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKAR 60
          M+RSASWNRFSD+Y+ H     A +S P    R S S   GN LPT DP+AE+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 VKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          VKFAE AVHVIPLVL++CA++LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIICAIILWLFSNP 83

[Close]

BLAST of Cla010700 vs. TrEMBL
Match: I1NHW0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G196700 PE=4 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKAR 60
          M+RSASWNRFSD+Y+ H     A +S P    R S S   GN LPT DP+AE+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 VKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          VKFAE AVHVIPLVL++CA++LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIVCAIILWLFSNP 83

[Close]

BLAST of Cla010700 vs. TrEMBL
Match: A0A0B2NV23_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000659 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKAR 60
          M+RSASWNRFSD+Y+ H     A +S P    R S S   GN LPT DP+AE+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 VKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          VKFAE AVHVIPLVL++CA++LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIVCAIILWLFSNP 83

[Close]

BLAST of Cla010700 vs. NCBI nr
Match: gi|778690315|ref|XP_011653100.1| (PREDICTED: uncharacterized protein LOC105435175 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.8e-36
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGN-ELPTNDPVAEMVKREKA 60
          MYRS SWNRFSDEYYSHS    APSSKPGQSLRLSSSFDHGN ELPTNDPV+EMVKREKA
Sbjct: 1  MYRSVSWNRFSDEYYSHS----APSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60

Query: 61 RVKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          RVKFAETAVHVIP VLL+CA+VLWFFSNP
Sbjct: 61 RVKFAETAVHVIPFVLLICAIVLWFFSNP 85

[Close]

BLAST of Cla010700 vs. NCBI nr
Match: gi|659107769|ref|XP_008453849.1| (PREDICTED: uncharacterized protein LOC103494452 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-33
Identity = 76/89 (85.39%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGN-ELPTNDPVAEMVKREKA 60
          MYRSASWNRFSDEYYSHS    APSSKPGQSLRLSSSFD GN ELP NDPV EMVKREKA
Sbjct: 1  MYRSASWNRFSDEYYSHS----APSSKPGQSLRLSSSFDQGNNELPMNDPVTEMVKREKA 60

Query: 61 RVKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          RVKFAE AVHVIP VLL+C +VLWFFSNP
Sbjct: 61 RVKFAENAVHVIPFVLLICGIVLWFFSNP 85

[Close]

BLAST of Cla010700 vs. NCBI nr
Match: gi|694389786|ref|XP_009370500.1| (PREDICTED: uncharacterized protein LOC103959855 [Pyrus x bretschneideri])

HSP 1 Score: 118.2 bits (295), Expect = 7.2e-24
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKAR 60
          M+RSASW+R +DEY+ HS+ SP+    P   LR+S SFD G +LP  DP+AE+ K+E++R
Sbjct: 1  MHRSASWSRVADEYFMHSTSSPSAGKGPS-GLRVSVSFDQGGDLPMYDPIAELAKKERSR 60

Query: 61 VKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          VKFAE AVHVIP VLL CA VLWFFSNP
Sbjct: 61 VKFAENAVHVIPFVLLFCAFVLWFFSNP 87

[Close]

BLAST of Cla010700 vs. NCBI nr
Match: gi|356533848|ref|XP_003535470.1| (PREDICTED: uncharacterized protein LOC100813926 [Glycine max])

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKAR 60
          M+RSASWNRFSD+Y+ H     A +S P    R S S   GN LPT DP+AE+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 VKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          VKFAE AVHVIPLVL++CA++LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIICAIILWLFSNP 83

[Close]

BLAST of Cla010700 vs. NCBI nr
Match: gi|657969296|ref|XP_008376365.1| (PREDICTED: uncharacterized protein LOC103439581 [Malus domestica])

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1  MYRSASWNRFSDEYYSHSSPSPAPSSKPGQSLRLSSSFDHGNELPTNDPVAEMVKREKAR 60
          M+RSASW+R +DEY+ HS+ SP+    P   LR+S SFD G +LP  DP+AE+ K+E++R
Sbjct: 1  MHRSASWSRVADEYFMHSTSSPSAGKGPS-GLRVSVSFDQGGDLPMYDPIAELAKKERSR 60

Query: 61 VKFAETAVHVIPLVLLLCAVVLWFFSNP 89
          VKFAE AVHVIP VLL CA V WFFSNP
Sbjct: 61 VKFAENAVHVIPFVLLFCAFVXWFFSNP 87

The following BLAST results are available for this feature:

BLAST of Cla010700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ80_CUCSA	3.4e-36	88.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025085 PE=4 SV=1	[more]
I1LCI6_SOYBN	1.9e-23	62.50	Uncharacterized protein OS=Glycine max GN=GLYMA_10G193700 PE=4 SV=2	[more]
A0A0B2RE95_GLYSO	1.9e-23	62.50	Uncharacterized protein OS=Glycine soja GN=glysoja_034027 PE=4 SV=1	[more]
I1NHW0_SOYBN	2.5e-23	62.50	Uncharacterized protein OS=Glycine max GN=GLYMA_20G196700 PE=4 SV=2	[more]
A0A0B2NV23_GLYSO	2.5e-23	62.50	Uncharacterized protein OS=Glycine soja GN=glysoja_000659 PE=4 SV=1	[more]

BLAST of Cla010700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690315\|ref\|XP_011653100.1\|	4.8e-36	88.76	PREDICTED: uncharacterized protein LOC105435175 [Cucumis sativus]	[more]
gi\|659107769\|ref\|XP_008453849.1\|	1.0e-33	85.39	PREDICTED: uncharacterized protein LOC103494452 [Cucumis melo]	[more]
gi\|694389786\|ref\|XP_009370500.1\|	7.2e-24	62.50	PREDICTED: uncharacterized protein LOC103959855 [Pyrus x bretschneideri]	[more]
gi\|356533848\|ref\|XP_003535470.1\|	2.7e-23	62.50	PREDICTED: uncharacterized protein LOC100813926 [Glycine max]	[more]
gi\|657969296\|ref\|XP_008376365.1\|	2.7e-23	61.36	PREDICTED: uncharacterized protein LOC103439581 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010700	Cla010700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189	FAMILY NOT NAMED	coord: 2..88 score: 5.9
None	No IPR available	PANTHER	PTHR34189:SF4	SUBFAMILY NOT NAMED	coord: 2..88 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010700	Cla97C07G144140	Watermelon (97103) v2	wmwmbB174
Cla010700	MELO3C017634	Melon (DHL92) v3.5.1	mewmB506
Cla010700	ClCG07G017110	Watermelon (Charleston Gray)	wcgwmB372
Cla010700	CSPI04G04230	Wild cucumber (PI 183967)	cpiwmB315
Cla010700	Cucsa.094000	Cucumber (Gy14) v1	cgywmB117
Cla010700	CmaCh04G003690	Cucurbita maxima (Rimu)	cmawmB693
Cla010700	CmaCh16G002260	Cucurbita maxima (Rimu)	cmawmB313
Cla010700	Lsi07G001290	Bottle gourd (USVL1VR-Ls)	lsiwmB441
Cla010700	Cp4.1LG01g03430	Cucurbita pepo (Zucchini)	cpewmB421
Cla010700	MELO3C017634.2	Melon (DHL92) v3.6.1	medwmB493
Cla010700	Carg08042	Silver-seed gourd	carwmB0369
Cla010700	Carg16767	Silver-seed gourd	carwmB0873
Cla010700	CsaV3_4G004320	Cucumber (Chinese Long) v3	cucwmB324
Cla010700	Bhi01G001995	Wax gourd	wgowmB176

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010700	Melon (DHL92) v3.6.1	medwmB012
Cla010700	Silver-seed gourd	carwmB0707
Cla010700	Cucumber (Chinese Long) v3	cucwmB420
Cla010700	Watermelon (97103) v2	wmwmbB144
Cla010700	Watermelon (97103) v1	wmwmB104
Cla010700	Cucumber (Gy14) v1	cgywmB215
Cla010700	Cucurbita moschata (Rifu)	cmowmB307
Cla010700	Cucurbita moschata (Rifu)	cmowmB557
Cla010700	Cucurbita moschata (Rifu)	cmowmB687
Cla010700	Melon (DHL92) v3.5.1	mewmB015
Cla010700	Watermelon (Charleston Gray)	wcgwmB128
Cla010700	Cucumber (Chinese Long) v2	cuwmB312
Cla010700	Cucumber (Chinese Long) v2	cuwmB395
Cla010700	Cucurbita pepo (Zucchini)	cpewmB224
Cla010700	Cucurbita pepo (Zucchini)	cpewmB699
Cla010700	Bottle gourd (USVL1VR-Ls)	lsiwmB016
Cla010700	Cucumber (Gy14) v2	cgybwmB290
Cla010700	Cucumber (Gy14) v2	cgybwmB368