Cp4.1LG01g03430 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03430
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEmb|CAB87938.1
LocationCp4.1LG01 : 1861668 .. 1861940 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCGATCGGTGAGCTGGAACCGATTCTCCGATGAATACTACTCGTCCTCCTCTCCGTCGCCGGCGCTGTCATCGACGCCAGGCCAGGCGTTGCGATTATCATTTGACGGAAATGAGCAGCCGACGAGTTATCCAGCGGATGAGATGGTGAAGCGAGAGAAGGCGCGATTCAAGTTCGCCGCAACTGCTGTTCATGTGATTCCTCTCGTTTTGGTGCTCTGCGCCATTCTTCTGTGGTTCTTCTCCAATCCAGGTAAGAGAAGATCGTAA

mRNA sequence

ATGCACCGATCGGTGAGCTGGAACCGATTCTCCGATGAATACTACTCGTCCTCCTCTCCGTCGCCGGCGCTGTCATCGACGCCAGGCCAGGCGTTGCGATTATCATTTGACGGAAATGAGCAGCCGACGAGTTATCCAGCGGATGAGATGGTGAAGCGAGAGAAGGCGCGATTCAAGTTCGCCGCAACTGCTGTTCATGTGATTCCTCTCGTTTTGGTGCTCTGCGCCATTCTTCTGTGGTTCTTCTCCAATCCAGGTAAGAGAAGATCGTAA

Coding sequence (CDS)

ATGCACCGATCGGTGAGCTGGAACCGATTCTCCGATGAATACTACTCGTCCTCCTCTCCGTCGCCGGCGCTGTCATCGACGCCAGGCCAGGCGTTGCGATTATCATTTGACGGAAATGAGCAGCCGACGAGTTATCCAGCGGATGAGATGGTGAAGCGAGAGAAGGCGCGATTCAAGTTCGCCGCAACTGCTGTTCATGTGATTCCTCTCGTTTTGGTGCTCTGCGCCATTCTTCTGTGGTTCTTCTCCAATCCAGGTAAGAGAAGATCGTAA

Protein sequence

MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLSFDGNEQPTSYPADEMVKREKARFKFAATAVHVIPLVLVLCAILLWFFSNPGKRRS
Homology
[Close]
BLAST of Cp4.1LG01g03430 vs. TrEMBL
Match: A0A0A0KZ80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025085 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRL--SFD--GNEQPTSYPADEMVKREKA 60
          M+RSVSWNRFSDEYYS S+P    SS PGQ+LRL  SFD   NE PT+ P  EMVKREKA
Sbjct: 1  MYRSVSWNRFSDEYYSHSAP----SSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60

Query: 61 RFKFAATAVHVIPLVLVLCAILLWFFSNP 86
          R KFA TAVHVIP VL++CAI+LWFFSNP
Sbjct: 61 RVKFAETAVHVIPFVLLICAIVLWFFSNP 85

[Close]
BLAST of Cp4.1LG01g03430 vs. TrEMBL
Match: A0A0B2RE95_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034027 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.0e-18
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLS---FDGNEQPTSYPADEMVKREKAR 60
          MHRS SWNRFSD+Y+       A +S+P    R S   FDGN  PT  P  E+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 FKFAATAVHVIPLVLVLCAILLWFFSNP 86
           KFA  AVHVIPLVL++CAI+LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIICAIILWLFSNP 83

[Close]
BLAST of Cp4.1LG01g03430 vs. TrEMBL
Match: I1LCI6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G193700 PE=4 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 7.0e-18
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLS---FDGNEQPTSYPADEMVKREKAR 60
          MHRS SWNRFSD+Y+       A +S+P    R S   FDGN  PT  P  E+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 FKFAATAVHVIPLVLVLCAILLWFFSNP 86
           KFA  AVHVIPLVL++CAI+LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIICAIILWLFSNP 83

[Close]
BLAST of Cp4.1LG01g03430 vs. TrEMBL
Match: A0A0B2NV23_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000659 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-18
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLS---FDGNEQPTSYPADEMVKREKAR 60
          MHRS SWNRFSD+Y+       A +S+P    R S   FDGN  PT  P  E+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 FKFAATAVHVIPLVLVLCAILLWFFSNP 86
           KFA  AVHVIPLVL++CAI+LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIVCAIILWLFSNP 83

[Close]
BLAST of Cp4.1LG01g03430 vs. TrEMBL
Match: I1NHW0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G196700 PE=4 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-18
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLS---FDGNEQPTSYPADEMVKREKAR 60
          MHRS SWNRFSD+Y+       A +S+P    R S   FDGN  PT  P  E+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 FKFAATAVHVIPLVLVLCAILLWFFSNP 86
           KFA  AVHVIPLVL++CAI+LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIVCAIILWLFSNP 83

[Close]
BLAST of Cp4.1LG01g03430 vs. TAIR10
Match: AT5G61630.1 (AT5G61630.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-14
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLSFDGNEQPT-SYPADEMVKREKARFK 60
          M+RS SWNR  ++Y S+      + S  G       D NE P+ + P +EMVK+EK+R K
Sbjct: 1  MYRSASWNRVPEDYSSAPPKGLWMGSVIGP-----LDENELPSYNNPPEEMVKKEKSRAK 60

Query: 61 FAATAVHVIPLVLVLCAILLWFFSNP 86
          FA  A+H+IP VL+ CA++LW FSNP
Sbjct: 61 FAENAIHIIPFVLLACALVLWLFSNP 81

[Close]
BLAST of Cp4.1LG01g03430 vs. TAIR10
Match: AT5G07490.1 (AT5G07490.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLSFDGNEQPTSYPAD----EMVKREKA 60
          M+RS SWNR +++Y           S P  A +  + G ++    P D    EM K+EK+
Sbjct: 1  MYRSASWNRVTEDY-----------SVPWSAPKGLWKGLDEDEPAPYDPTGQEMTKKEKS 60

Query: 61 RFKFAATAVHVIPLVLVLCAILLWFFSNP 86
          R KFA  AVH+IP VL+ CA++LWFFSNP
Sbjct: 61 RTKFAENAVHIIPFVLLACALVLWFFSNP 78

[Close]
BLAST of Cp4.1LG01g03430 vs. TAIR10
Match: AT2G35658.2 (AT2G35658.2 unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLSFDGNEQ----PTSYPADEMVKREKA 60
          M RS S +  SD+  S++SPSP+ S      ++ S D ++     P   P     K+ K+
Sbjct: 1  MRRSASASIVSDQL-SANSPSPSPSPP---RIKTSADSDDSHLLLPRYDPNSHPGKKNKS 60

Query: 61 RFKFAATAVHVIPLVLVLCAILLWFFSNPGKR 89
          RF+ A  A+H IP+VL+LCA++LW FSNPG +
Sbjct: 61 RFRSAENAIHFIPIVLILCAVILWMFSNPGNQ 88

[Close]
BLAST of Cp4.1LG01g03430 vs. TAIR10
Match: AT4G16840.1 (AT4G16840.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.0e-07
Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLSFDGNEQ--PTSYPADEMVKREKARF 60
          M RS S +R  D + ++S   P       Q++    D  E   P   P  +  KREK+RF
Sbjct: 1  MRRSASGSRVLDHFPATSRSPPR-----SQSVTAMEDDVELLLPRYDPNSQAGKREKSRF 60

Query: 61 KFAATAVHVIPLVLVLCAILLWFFSNPGKRRS 91
          +F+   +H+IPL+L+LC  +LW  S     RS
Sbjct: 61 RFSENVIHLIPLILLLCVAILWLSSYSAALRS 87

[Close]
BLAST of Cp4.1LG01g03430 vs. NCBI nr
Match: gi|778690315|ref|XP_011653100.1| (PREDICTED: uncharacterized protein LOC105435175 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRL--SFD--GNEQPTSYPADEMVKREKA 60
          M+RSVSWNRFSDEYYS S+P    SS PGQ+LRL  SFD   NE PT+ P  EMVKREKA
Sbjct: 1  MYRSVSWNRFSDEYYSHSAP----SSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60

Query: 61 RFKFAATAVHVIPLVLVLCAILLWFFSNP 86
          R KFA TAVHVIP VL++CAI+LWFFSNP
Sbjct: 61 RVKFAETAVHVIPFVLLICAIVLWFFSNP 85

[Close]
BLAST of Cp4.1LG01g03430 vs. NCBI nr
Match: gi|659107769|ref|XP_008453849.1| (PREDICTED: uncharacterized protein LOC103494452 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRL--SFD--GNEQPTSYPADEMVKREKA 60
          M+RS SWNRFSDEYYS S+P    SS PGQ+LRL  SFD   NE P + P  EMVKREKA
Sbjct: 1  MYRSASWNRFSDEYYSHSAP----SSKPGQSLRLSSSFDQGNNELPMNDPVTEMVKREKA 60

Query: 61 RFKFAATAVHVIPLVLVLCAILLWFFSNP 86
          R KFA  AVHVIP VL++C I+LWFFSNP
Sbjct: 61 RVKFAENAVHVIPFVLLICGIVLWFFSNP 85

[Close]
BLAST of Cp4.1LG01g03430 vs. NCBI nr
Match: gi|356533848|ref|XP_003535470.1| (PREDICTED: uncharacterized protein LOC100813926 [Glycine max])

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLS---FDGNEQPTSYPADEMVKREKAR 60
          MHRS SWNRFSD+Y+       A +S+P    R S   FDGN  PT  P  E+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 FKFAATAVHVIPLVLVLCAILLWFFSNP 86
           KFA  AVHVIPLVL++CAI+LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIICAIILWLFSNP 83

[Close]
BLAST of Cp4.1LG01g03430 vs. NCBI nr
Match: gi|356574708|ref|XP_003555487.1| (PREDICTED: uncharacterized protein LOC100805238 [Glycine max])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYSSSSPSPALSSTPGQALRLS---FDGNEQPTSYPADEMVKREKAR 60
          MHRS SWNRFSD+Y+       A +S+P    R S   FDGN  PT  P  E+ KRE+AR
Sbjct: 1  MHRSASWNRFSDDYFKH-----ATTSSPSSGHRSSYSMFDGNNLPTYDPIAELAKRERAR 60

Query: 61 FKFAATAVHVIPLVLVLCAILLWFFSNP 86
           KFA  AVHVIPLVL++CAI+LW FSNP
Sbjct: 61 VKFAENAVHVIPLVLIVCAIILWLFSNP 83

[Close]
BLAST of Cp4.1LG01g03430 vs. NCBI nr
Match: gi|1012349525|gb|KYP60715.1| (hypothetical protein KK1_023127 [Cajanus cajan])

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-17
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 1 

Query: 1  MHRSVSWNRFSDEYYS-SSSPSPALSSTPGQALRLSFDGNEQPTSYPADEMVKREKARFK 60
          MHRS SWNRFSD+Y+  ++S SPA       ++   FDGN  PT  P  E+ K+E+AR K
Sbjct: 1  MHRSASWNRFSDDYFKHATSSSPATGHRSSYSM---FDGNNLPTYDPIAELAKKERARVK 60

Query: 61 FAATAVHVIPLVLVLCAILLWFFSNP 86
          FA  AVHVIP VL++CAI+LW FSNP
Sbjct: 61 FAENAVHVIPFVLIICAIILWLFSNP 83

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ80_CUCSA1.1e-2371.91Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025085 PE=4 SV=1[more]
A0A0B2RE95_GLYSO7.0e-1857.95Uncharacterized protein OS=Glycine soja GN=glysoja_034027 PE=4 SV=1[more]
I1LCI6_SOYBN7.0e-1857.95Uncharacterized protein OS=Glycine max GN=GLYMA_10G193700 PE=4 SV=2[more]
A0A0B2NV23_GLYSO9.2e-1857.95Uncharacterized protein OS=Glycine soja GN=glysoja_000659 PE=4 SV=1[more]
I1NHW0_SOYBN9.2e-1857.95Uncharacterized protein OS=Glycine max GN=GLYMA_20G196700 PE=4 SV=2[more]
BLAST of Cp4.1LG01g03430 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61630.12.5e-1446.51 unknown protein[more]
AT5G07490.13.6e-1343.82 unknown protein[more]
AT2G35658.21.7e-1040.22 unknown protein[more]
AT4G16840.15.0e-0734.78 unknown protein[more]
BLAST of Cp4.1LG01g03430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778690315|ref|XP_011653100.1|1.6e-2371.91PREDICTED: uncharacterized protein LOC105435175 [Cucumis sativus][more]
gi|659107769|ref|XP_008453849.1|3.3e-2167.42PREDICTED: uncharacterized protein LOC103494452 [Cucumis melo][more]
gi|356533848|ref|XP_003535470.1|1.0e-1757.95PREDICTED: uncharacterized protein LOC100813926 [Glycine max][more]
gi|356574708|ref|XP_003555487.1|1.3e-1757.95PREDICTED: uncharacterized protein LOC100805238 [Glycine max][more]
gi|1012349525|gb|KYP60715.1|5.0e-1755.81hypothetical protein KK1_023127 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03430.1Cp4.1LG01g03430.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34189FAMILY NOT NAMEDcoord: 2..85
score: 3.5
NoneNo IPR availablePANTHERPTHR34189:SF4SUBFAMILY NOT NAMEDcoord: 2..85
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03430Cucsa.094000Cucumber (Gy14) v1cgycpeB0191
Cp4.1LG01g03430CmaCh04G003690Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03430Cla010700Watermelon (97103) v1cpewmB421
Cp4.1LG01g03430MELO3C017634Melon (DHL92) v3.5.1cpemeB425
Cp4.1LG01g03430ClCG07G017110Watermelon (Charleston Gray)cpewcgB403
Cp4.1LG01g03430CSPI04G04230Wild cucumber (PI 183967)cpecpiB398
Cp4.1LG01g03430Lsi07G001290Bottle gourd (USVL1VR-Ls)cpelsiB374
Cp4.1LG01g03430MELO3C017634.2Melon (DHL92) v3.6.1cpemedB497
Cp4.1LG01g03430CsaV3_4G004320Cucumber (Chinese Long) v3cpecucB0498
Cp4.1LG01g03430Bhi01G001995Wax gourdcpewgoB0519
Cp4.1LG01g03430Carg08042Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03430Cucumber (Chinese Long) v3cpecucB0540
Cp4.1LG01g03430Wax gourdcpewgoB0477
Cp4.1LG01g03430Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03430Cucurbita pepo (Zucchini)cpecpeB403
Cp4.1LG01g03430Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03430Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03430Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03430Cucumber (Chinese Long) v2cpecuB401
Cp4.1LG01g03430Bottle gourd (USVL1VR-Ls)cpelsiB314
Cp4.1LG01g03430Bottle gourd (USVL1VR-Ls)cpelsiB340
Cp4.1LG01g03430Watermelon (Charleston Gray)cpewcgB372
Cp4.1LG01g03430Cucumber (Gy14) v2cgybcpeB503
Cp4.1LG01g03430Silver-seed gourdcarcpeB1001
Cp4.1LG01g03430Silver-seed gourdcarcpeB1216