CmoCh04G003880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pre-mRNA splicing factor
Location	Cmo_Chr04 : 1913874 .. 1916809 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATTTAAACTATAATTTAATCATTTTCTACTTATCAGTTGGGTTTCTTTCAGATTACTAGTGGGTGAAAAATTCGCGGGCTAGGAGAGGCGGCGGCAGCGACGGGGACGATCCGATTCCCCAATCTGAATCTCGAACTTTTTCCTCACGAAACCACAGCGCTGGTGGCTAATAGTCCGATTCCTAAGTGAAACTCGGTTAGAGACATGGCGTTGAAGTTCTTGAACAAGAAAGGATGGCACACCGGTAGTCTCCGGAACATAGAGAACGTCTGGAAGGCGGAGCAGAAGCACGAGGCCGAGCAGAAGAAGTTGGAAGAGCTCCGTAAACAGATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTTCAAGAACAGGCCGGCCTCGTTCCGTATGTTTTTCCTTTTCTCTTTCTTCCATCTTGTTGTTTACGGATCGAATTGTATATTTTATAGGTAGTCTGTGAGTTTCAAATTCAATTCGATCTCTGAGTAGATAAGGATTGAAAATGTGTCCTCGGTTAGGATTAGGGTTAGGGTTAGGGTCTAATTTGTTCGATCGATTTGGCTAATATTCGGATTTTGGTCAATATGGCGTTTCAGGAAGCAGGAGAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGCCAGCGAGTCCGATGGATTTAAGAGTCTCGAAACCCTACCTAGTACATCTACTCCCGCGGCTTCCTCTGATCCATCTAGTTCCAAGGTACTGTTACTCGTTGTCTCTGTCCTGTTAATTTGTGTACTTTGGCTATGTCTTCGGTGCTCAATCATGATTTTGTTGCATTTTTGTGTTGTTTTACAGGAAGCCGCTGTCCCAGGAGCTCTGTTTGTGGATAAACTTCCTTCTGCTAATGACGCATGGAGGAAGCTTCATTCTGATCCTTTGCTTATCATTCGACAACGTGAGCAACAAGCTCTTGCACGCGTAAAAAACAATCCTATTCAGATGGCTATGATTCGCAAGACTGTAAGTTCCCATTTTTCTTTCTTCCCTGCTGTTTTATTTTCTCCTTTATCGCAAAACAATCCTACAATCCTATTAAGCATTGGCTGTGAAAATTATACGGAAATATTCTTCTTCCATTCATTCTTGTACAGTGAAACTCTCTAAACTTATATGTTAGCTTGTCTATGGACACTTGTTGGTCGTGTAATGAAACAGATTAAGCCCACTGTAAGCAAATATTGTCCGCTTTGACCTGTTACGTATCGTCGTCAGCCTCAAAGTTTTAAAACGCGTCCGCTAGGGAGAGATTTCCACACTCTTATGAAAAAATTACTTTGTTCCCTTTTCCAATCGATGTGAGATCTCAATCCACCCTCTTTCGGGGTCCAGTGCTCTCGTTGGCACTCGTTCCCCTAGCAGATGCGTTTTAAAACCGTGAGACTGACTGCGATACATAACGAGCTAAAGCGGATAATATCTGCTAGCGGTGGGCTTGAGCGGTTACATGCAAGATCTTTCCTCCTTGTTTGATTTGAAGAATTGATTTGAGGGTTTTTTTTTTCTCTCCATACATATTTATAGGTTGAAGGGGAAAAACACAAGGAAAAGAATCCCGATCACAAAAGAGATCGAAAGAAGCACCGACATAGCAAATCTAAACATTTTTCTCCAGAACGAGATCATGATTCTGAAGATGCCAGCCCTGAGAGGCAGAGAAGGAAACATGGTCACGACAAGACTTCAAAACATGATGATAATTCTTACTCCGAAGATAGGAGGAGAACTGATTATAAGAATGAGAGAGATCATAAAGATGATCGCGACAAGAGTTCAAGACATGATGATCATTCTTATCCCGAAGATAGGAGTAGAACTAATTATAAGAATGAGAGGGATCATAAAGACGATCGTGACAAGAGTTCAAGACATGATGATCATTCTTATTCCGAAGATAGGAGGAGAACTGATTATAAGAACGAGAGAGATCATAAAGATGATCGTGACAAGAGTTCAAGACATGATGATCACTCTTATTCAGAAGATAGAAGGAGAAGAAATGATTATAAGAACGAGAGGGACCATGACAGAGGCTCGAAATATGCTGCACAAACGACGTACGATCAGTCAGATCGAAAGTCATCCAAAACCCATTCTCATGATTCTGCAGAGAGATATCATGACAGATCAAAAAGAGAGAGAGATTCTTATGCTAACAACGAAAAGGTGAGCAGAAGAGTGGGGGAATCGAGATCTTATGAACCCAATGCTTCTGAAACTCCTCATGAGTCGCGCCATAAGCACCGTAGGCCTGCTACAAAGCTTTCAGAAGAAGAGCGTGCAGCTAGGCTGCGTGAGATGCAGCAGGATGCCGAGTTACATGAAGAGCAAAGATGGAGGCGTTTGAAGCAGGCAGCTGAGGATGATGCACTGGAAGCCAAACAAAATGCAGCAGTGCCCTCGAGCAAAAATTTCTTGGACGCTGCTCAGAAAAGCATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGTAGGACGTATTATTCACAGGGTAAATCTGATATTGAAGCCAATGCTTTTCGACGGTAATGCACATCACTTATACACTTTGCTTATGGTTATTGTATAACATCCTTTTTTAGTGGTACTGCTGCTGTTAACTCAATGAAGAATTGCTTCTTGAAAACATTTGGAGTTCATGTATTTGTATTATCTTTTCAATCCATTAGTATTACACTTATCTATAGTGAAATTTGTACTAAATTAATGGCAAATTCGTGACATTATGAAACAAAAGTCATTTCATATTACTTTTTGATCTCGTATACATAATTCTTGATGATTTTTTGTCCTATGTCTTTCAGCACCATTTCTCAAGGCTAAATATTCATGTTTTTTTTTTTTTCAAATATCAGAAGGATGGAGTGA

mRNA sequence

ATGTCCGATTTAAACTATAATTTAATCATTTTCTACTTATCAGTTGGGTTTCTTTCAGATTACTAGTGGGTGAAAAATTCGCGGGCTAGGAGAGGCGGCGGCAGCGACGGGGACGATCCGATTCCCCAATCTGAATCTCGAACTTTTTCCTCACGAAACCACAGCGCTGGTGGCTAATAGTCCGATTCCTAAGTGAAACTCGGTTAGAGACATGGCGTTGAAGTTCTTGAACAAGAAAGGATGGCACACCGGTAGTCTCCGGAACATAGAGAACGTCTGGAAGGCGGAGCAGAAGCACGAGGCCGAGCAGAAGAAGTTGGAAGAGCTCCGTAAACAGATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTTCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAGAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGCCAGCGAGTCCGATGGATTTAAGAGTCTCGAAACCCTACCTAGTACATCTACTCCCGCGGCTTCCTCTGATCCATCTAGTTCCAAGGAAGCCGCTGTCCCAGGAGCTCTGTTTGTGGATAAACTTCCTTCTGCTAATGACGCATGGAGGAAGCTTCATTCTGATCCTTTGCTTATCATTCGACAACGTGAGCAACAAGCTCTTGCACGCGTAAAAAACAATCCTATTCAGATGGCTATGATTCGCAAGACTGTTGAAGGGGAAAAACACAAGGAAAAGAATCCCGATCACAAAAGAGATCGAAAGAAGCACCGACATAGCAAATCTAAACATTTTTCTCCAGAACGAGATCATGATTCTGAAGATGCCAGCCCTGAGAGGCAGAGAAGGAAACATGGTCACGACAAGACTTCAAAACATGATGATAATTCTTACTCCGAAGATAGGAGGAGAACTGATTATAAGAATGAGAGAGATCATAAAGATGATCGCGACAAGAGTTCAAGACATGATGATCATTCTTATCCCGAAGATAGGAGTAGAACTAATTATAAGAATGAGAGGGATCATAAAGACGATCGTGACAAGAGTTCAAGACATGATGATCATTCTTATTCCGAAGATAGGAGGAGAACTGATTATAAGAACGAGAGAGATCATAAAGATGATCGTGACAAGAGTTCAAGACATGATGATCACTCTTATTCAGAAGATAGAAGGAGAAGAAATGATTATAAGAACGAGAGGGACCATGACAGAGGCTCGAAATATGCTGCACAAACGACGTACGATCAGTCAGATCGAAAGTCATCCAAAACCCATTCTCATGATTCTGCAGAGAGATATCATGACAGATCAAAAAGAGAGAGAGATTCTTATGCTAACAACGAAAAGGTGAGCAGAAGAGTGGGGGAATCGAGATCTTATGAACCCAATGCTTCTGAAACTCCTCATGAGTCGCGCCATAAGCACCGTAGGCCTGCTACAAAGCTTTCAGAAGAAGAGCGTGCAGCTAGGCTGCGTGAGATGCAGCAGGATGCCGAGTTACATGAAGAGCAAAGATGGAGGCGTTTGAAGCAGGCAGCTGAGGATGATGCACTGGAAGCCAAACAAAATGCAGCAGTGCCCTCGAGCAAAAATTTCTTGGACGCTGCTCAGAAAAGCATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGTAGGACGTATTATTCACAGGGTAAATCTGATATTGAAGCCAATGCTTTTCGACGAAGGATGGAGTGA

Coding sequence (CDS)

ATGGCGTTGAAGTTCTTGAACAAGAAAGGATGGCACACCGGTAGTCTCCGGAACATAGAGAACGTCTGGAAGGCGGAGCAGAAGCACGAGGCCGAGCAGAAGAAGTTGGAAGAGCTCCGTAAACAGATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTTCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAGAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGCCAGCGAGTCCGATGGATTTAAGAGTCTCGAAACCCTACCTAGTACATCTACTCCCGCGGCTTCCTCTGATCCATCTAGTTCCAAGGAAGCCGCTGTCCCAGGAGCTCTGTTTGTGGATAAACTTCCTTCTGCTAATGACGCATGGAGGAAGCTTCATTCTGATCCTTTGCTTATCATTCGACAACGTGAGCAACAAGCTCTTGCACGCGTAAAAAACAATCCTATTCAGATGGCTATGATTCGCAAGACTGTTGAAGGGGAAAAACACAAGGAAAAGAATCCCGATCACAAAAGAGATCGAAAGAAGCACCGACATAGCAAATCTAAACATTTTTCTCCAGAACGAGATCATGATTCTGAAGATGCCAGCCCTGAGAGGCAGAGAAGGAAACATGGTCACGACAAGACTTCAAAACATGATGATAATTCTTACTCCGAAGATAGGAGGAGAACTGATTATAAGAATGAGAGAGATCATAAAGATGATCGCGACAAGAGTTCAAGACATGATGATCATTCTTATCCCGAAGATAGGAGTAGAACTAATTATAAGAATGAGAGGGATCATAAAGACGATCGTGACAAGAGTTCAAGACATGATGATCATTCTTATTCCGAAGATAGGAGGAGAACTGATTATAAGAACGAGAGAGATCATAAAGATGATCGTGACAAGAGTTCAAGACATGATGATCACTCTTATTCAGAAGATAGAAGGAGAAGAAATGATTATAAGAACGAGAGGGACCATGACAGAGGCTCGAAATATGCTGCACAAACGACGTACGATCAGTCAGATCGAAAGTCATCCAAAACCCATTCTCATGATTCTGCAGAGAGATATCATGACAGATCAAAAAGAGAGAGAGATTCTTATGCTAACAACGAAAAGGTGAGCAGAAGAGTGGGGGAATCGAGATCTTATGAACCCAATGCTTCTGAAACTCCTCATGAGTCGCGCCATAAGCACCGTAGGCCTGCTACAAAGCTTTCAGAAGAAGAGCGTGCAGCTAGGCTGCGTGAGATGCAGCAGGATGCCGAGTTACATGAAGAGCAAAGATGGAGGCGTTTGAAGCAGGCAGCTGAGGATGATGCACTGGAAGCCAAACAAAATGCAGCAGTGCCCTCGAGCAAAAATTTCTTGGACGCTGCTCAGAAAAGCATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGTAGGACGTATTATTCACAGGGTAAATCTGATATTGAAGCCAATGCTTTTCGACGAAGGATGGAGTGA

Homology

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BLAST of CmoCh04G003880 vs. Swiss-Prot
Match: CWC25_HUMAN (Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens GN=CWC25 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.8e-10
Identity = 92/324 (28.40%), Postives = 153/324 (47.22%), Query Frame = 1


Query: 8   KKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAGLVPK-QE 67
           KK WH  +LRN+E VWKAEQKHEAE+KK+EEL++++ EE+ R+E +   E  G V K +E
Sbjct: 9   KKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKEE 68

Query: 68  RLDFLYES--GLA------VGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALF 127
           +LD++Y+   G+       +G+  +   F+ +E   +           SS+   +PG++F
Sbjct: 69  KLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGC---------SSETGLLPGSIF 128

Query: 128 VDK-LPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDH 187
                 S  D   K+  DPL IIR++E++    V NNP++M  I++ ++    K++    
Sbjct: 129 APSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKK 188

Query: 188 KRDRKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTD---- 247
           K  +KKH+  K +  S +R    ++ S  R ++K  +          Y    R +D    
Sbjct: 189 KEKKKKHKKHKHRSSSSDRSSSEDEHSAGRSQKKMANSSPVLSKVPGYGLQVRNSDRNQG 248

Query: 248 ------YKNERDHKDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSE 307
                  + +R H       SR   HS P   S+ + + E   +D R +S      S   
Sbjct: 249 LQGPLTAEQKRGHGMKNHSRSRSSSHSPPRHASKKSTR-EAGSRDRRSRSLGRRSRSPRP 308

Query: 308 DRRRTDYKNERDHKDDRDKSSRHD 312
            +      N R+    R  S + +
Sbjct: 309 SKLHNSKVNRRETGQTRSPSPKKE 322

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BLAST of CmoCh04G003880 vs. Swiss-Prot
Match: CWC25_ASPFU (Pre-mRNA-splicing factor cwc25 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc25 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-07
Identity = 137/460 (29.78%), Postives = 208/460 (45.22%), Query Frame = 1


Query: 8   KKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAGLVPKQER 67
           KK WH   LRN E VW  E++   E+K++E+LR++  EE++ QE + LQE +G   +  R
Sbjct: 8   KKSWHPSLLRNQERVWAEEKRALEERKRIEQLRREREEERQIQELQRLQEASGKGRQLNR 67

Query: 68  LDFLYES-GLAVGK-ASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGA-LFVDKLPS 127
           +D++Y++   A G  A E +G+   +                 K   V GA      + +
Sbjct: 68  VDWMYQAPSSATGHYAEEMEGYLLGKRRIDGILLKNDESKKLEKGTDVVGANAAPPPVNN 127

Query: 128 ANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRDRKKH 187
             D   K+ +DPLL I++REQ A      N ++ ++ R     +K ++++ + +RDR   
Sbjct: 128 PRDTMAKVMADPLLEIKKREQAAY----ENMVKESVRRSQHIRDKDRDRDRERRRDRGDR 187

Query: 188 RHSKSKHFSPERD-HDSEDASPERQRRKHGHDKTS----KHDDNSYSEDRRRTDYKNERD 247
             S+ +  S  R  H+ EDA    + R H H   S       D    +DR   DY++ERD
Sbjct: 188 DRSRDRDRSHRRSRHEDEDAHRSHRHRSHRHRSRSPLSPDRSDRKRGDDR---DYRDERD 247

Query: 248 HKDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERD 307
            +DDR     H  H   +DR     ++ERD + DR    RH    Y +   R D+   R 
Sbjct: 248 RRDDR--RDEHRGHDRRDDR-----RSERDRRADRGDEDRHSSR-YKDRDDRYDHSTRRR 307

Query: 308 HKDDRDKSSRHDDHSYSEDRRRRND-----YKNERDHDRGSKYAAQTTYDQSDRKSSKTH 367
              DR  S R  +H Y  DRRR  D     +++ R+HDR   Y        +DRK +K  
Sbjct: 308 SYADRSPSPRRGNHYY--DRRRTEDRSDGYHRDSRNHDRPEFYRG------NDRKVNK-E 367

Query: 368 SHDSAERYHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEE 427
             DS  R  +RS   RD  A N++                               K+ EE
Sbjct: 368 PRDSNLR--ERSSNTRDEVAGNKE-------------------------------KVLEE 407

Query: 428 ERAARLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAA 455
           ER  +L EM  +A   +E   +RL++ AE  A+E K+  A
Sbjct: 428 ERKKKLAEMMSNA---DELEQKRLQRIAEVTAMEEKEREA 407

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BLAST of CmoCh04G003880 vs. TrEMBL
Match: A0A103XTQ7_CYNCS (CBF1-interacting co-repressor CIR, N-terminal domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_001213 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-92
Identity = 262/506 (51.78%), Postives = 327/506 (64.62%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKH+AEQKKLEELRKQIHEE+ER EFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHDAEQKKLEELRKQIHEERERSEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERLDFLY+SGLAVGK + SDGFK+LE+ P+ + P     PSS+ +A+ PGALF D
Sbjct: 61  LVPKQERLDFLYDSGLAVGKGN-SDGFKALESFPAKAEP---EQPSSANKASTPGALFED 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180
           K  SANDAWRKLHSDPLL+I+QREQ+ALARVKNNP+QMAMI K+VE +KHKEK  D ++ 
Sbjct: 121 KPQSANDAWRKLHSDPLLLIKQREQEALARVKNNPVQMAMIHKSVEAKKHKEKTSDGEKH 180

Query: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240
           ++KH   K KH      H S          KH     +  DD    E +R T   +   H
Sbjct: 181 KEKHHRKKLKH----EKHTSS---------KH---HINSDDDVGQGEGQRSTSSSHYSKH 240

Query: 241 KDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           K +       D   Y  +R      + +DH   +      +DH  S+  +R     + DH
Sbjct: 241 KRNIQTERVRDGDRYQHERY-----HGKDHFGPQSTKRDREDHFSSQSAKR----EKEDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAAQTTY-DQSDRKSSKTHSHDSA 360
              +      +DHS S+  +R          DR   Y++Q+   D+ D   S++   D A
Sbjct: 301 FGSQSTKRDREDHSGSQSTKR----------DREGHYSSQSAKRDKEDHFGSQSAKRDEA 360

Query: 361 ERYHDRS-KRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAA 420
           +    +S KR+R+ +  ++   +R GE R + P       E  H  R  + KLSEEERAA
Sbjct: 361 DHSGSQSAKRDREDHIGSQS-GKRDGEDRKHLPPRHHKVGE--HNRRNSSMKLSEEERAA 420

Query: 421 RLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSS 480
           +L+EMQ DAE+HEEQRW+RLKQAA+DDA EA +  A  S +NFLDAA KS++GAEKGGSS
Sbjct: 421 KLKEMQMDAEVHEEQRWKRLKQAADDDAKEATR--ASSSGRNFLDAAHKSVFGAEKGGSS 460

Query: 481 TIEESIRRRTYYSQGKSDIEANAFRR 505
           TIEES+RRRT+YSQ +S  E NAFRR
Sbjct: 481 TIEESVRRRTHYSQRRS--EENAFRR 460

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BLAST of CmoCh04G003880 vs. TrEMBL
Match: A0A0B2S6B4_GLYSO (Pre-mRNA-splicing factor CWC25 like OS=Glycine soja GN=glysoja_015117 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 3.7e-92
Identity = 264/549 (48.09%), Postives = 357/549 (65.03%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKL+ELRKQI EE+ER EFRLLQE+AG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIQEERERTEFRLLQEKAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLP---STSTPAASSDPSSSKE-AAVPGA 120
           LVP QERL+FLY+SGL+VGK+S S+GFK+LE LP   +T    +S+  S+SKE A+VPGA
Sbjct: 61  LVPHQERLEFLYDSGLSVGKSSNSEGFKALEQLPKSDATDAAGSSASASASKEGASVPGA 120

Query: 121 LFVDKLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPD 180
           LF +K  SANDAWRKLHSDPLL+IRQREQ+ALA++KNNP++MAMI+K++EG ++KEK   
Sbjct: 121 LFEEKPQSANDAWRKLHSDPLLMIRQREQEALAKIKNNPVKMAMIKKSIEGTENKEKA-- 180

Query: 181 HKRD-RKKHRHSKSKHF--------------------SPERDH-----DSEDASPERQ-R 240
           HK++ RKKHR SKSKH                       +R H     DSE  S E + R
Sbjct: 181 HKKEKRKKHRSSKSKHKKLSDSEDDTTERRKRKTGNEDSDRKHHKAQSDSEYQSSEGEMR 240

Query: 241 RKHGHDKTSKHDDNSYSEDRRRTDYKNERDHKDDRDKSSRHDDHSYPEDRSRTNY----- 300
           R+    +  K+ + S +  +R+ + K+ ++   DR+ +    + S  + +  + Y     
Sbjct: 241 RRKDRIEDQKYRERSPNHQQRQRNGKDYKEDAGDRNYNRSKSERSVQKGQLDSGYESSEG 300

Query: 301 -KNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDHKDDRDKSSRHDDHSYSEDRRRRN 360
            K  ++H +D+    R  +H   +       +N RD+K+D  +  +H + S +  +R+RN
Sbjct: 301 EKRRKNHYEDKKYRERSPNHQQRQ-------RNGRDYKEDTGEDKKHRERSPNHQQRQRN 360

Query: 361 --DYKNERDHDRGSKYAAQTTYDQSDRKSSKTHSHDSAERYHDRSKRERDSYANNEKVSR 420
             DYK     D+  KY  ++   Q  +++S+ +  D+ +R ++ SK ER +      +  
Sbjct: 361 GRDYKEGTGEDK--KYRERSPEHQHRQRNSRDYKEDTGDRNYNTSKSERYASEGRSNIDA 420

Query: 421 ------RVGESRSYEPNASETPHESRHKHRRPATKLSEEERAARLREMQQDAELHEEQRW 480
                 R+ E+ S   +AS     S +K R  A KLSEEERAA+L++MQ  AELHEEQRW
Sbjct: 421 PKSGGGRISEASSNRYSASSPERRSHYKRRNMAPKLSEEERAAKLKQMQLAAELHEEQRW 480

Query: 481 RRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSSTIEESIRRRTYYSQGKS 505
           +R+K+A E DA EA QN      KNFLD AQKS+YGA +GGS++I ES+RRRTYYSQG+S
Sbjct: 481 KRIKKAEESDAKEAIQNDNA-GGKNFLDTAQKSVYGAAEGGSASIAESVRRRTYYSQGRS 537

[Close]

BLAST of CmoCh04G003880 vs. TrEMBL
Match: A0A0S3S470_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G101000 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 4.9e-92
Identity = 264/514 (51.36%), Postives = 341/514 (66.34%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQI EE+ER EFRLLQE+AG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIQEERERTEFRLLQEKAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120
           LVP QERL+FLY+SGL+VGK+S S+GFK+LE LP +    A S  +S + A+VPGALF +
Sbjct: 61  LVPHQERLEFLYDSGLSVGKSSNSEGFKALEQLPKSDGTDAPSSSASKEGASVPGALFEE 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180
           K  SANDAWRKLHSDPLL+IRQREQ+ALA++KNNP++MAMI+K++EG  HKEK   HK++
Sbjct: 121 KPQSANDAWRKLHSDPLLMIRQREQEALAKIKNNPVKMAMIKKSIEGTDHKEKA--HKKE 180

Query: 181 -RKKHRHSKSKHFSPERDHDSEDASPE-RQRRKHGHDKTSKHDDNSYSEDRRRTDYKNER 240
            RKKHR SKSKH   ++  DSED   E R+RR    D   KH+       + ++D   E 
Sbjct: 181 KRKKHRSSKSKH---KKHSDSEDDPTEGRKRRTDNEDIDKKHN-------KAQSDSGYES 240

Query: 241 DHKDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNER 300
             +++R K  R++D  Y E RS ++ + +R  KD  + +         +DR     K+ER
Sbjct: 241 GERENRRKD-RYEDKKYRE-RSPSHQQRQRKGKDYEEGA---------DDRNHGRSKSER 300

Query: 301 DHKDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAAQTTYDQSDRKSSKTHSHDS 360
              D +       D      +RRRN Y++        KY  ++   Q  +++ K +  D 
Sbjct: 301 SVYDAQSNPGYESDGG----KRRRNHYEDR-------KYRERSPGHQQRQRNGKDYKEDG 360

Query: 361 AERYHDRSKRERDSYANNEKVS--------RRVGESRSYEPNASETPHESRHKHRRPATK 420
            +R ++RSK ER  YA+ +K +         R  E+ S   +AS   HE  +K R  A K
Sbjct: 361 GDRNYNRSKSER--YASEDKSNIDAPKSGGERFSETSSNRYSASS--HERGYKRRNVAPK 420

Query: 421 LSEEERAARLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMY 480
           LSEEERA +LR+MQ  AE+HEEQRW+R+K+A E DA E  Q+      KNFLD+ QKS+Y
Sbjct: 421 LSEEERAEKLRQMQLAAEVHEEQRWKRIKKAEESDAREVVQSNNA-GGKNFLDSTQKSVY 475

Query: 481 GAEKGGSSTIEESIRRRTYYSQGKSDIEANAFRR 505
           GA +GGS++I ES+RRRTYYSQG+S  E NAFRR
Sbjct: 481 GAGEGGSASIAESVRRRTYYSQGRSGGEGNAFRR 475

[Close]

BLAST of CmoCh04G003880 vs. TrEMBL
Match: I1L084_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G018000 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 6.4e-92
Identity = 264/549 (48.09%), Postives = 357/549 (65.03%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKL+ELRKQI EE+ER EFRLLQE+AG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIQEERERTEFRLLQEKAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLP---STSTPAASSDPSSSKE-AAVPGA 120
           LVP QERL+FLY+SGL+VGK+S S+GFK+LE LP   +T    +S+  S+SKE A+VPGA
Sbjct: 61  LVPHQERLEFLYDSGLSVGKSSNSEGFKALEQLPKSDATDAAGSSASASASKEGASVPGA 120

Query: 121 LFVDKLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPD 180
           LF +K  SANDAWRKLHSDPLL+IRQREQ+ALA++KNNP++MAMI+K++EG ++KEK   
Sbjct: 121 LFEEKPQSANDAWRKLHSDPLLMIRQREQEALAKIKNNPVKMAMIKKSIEGTENKEKA-- 180

Query: 181 HKRD-RKKHRHSKSKHF--------------------SPERDH-----DSEDASPERQ-R 240
           HK++ RKKHR SKSKH                       +R H     DSE  S E + R
Sbjct: 181 HKKEKRKKHRSSKSKHKKLSDSEDDTTERRKRKTGNEDSDRKHHKAQSDSEYQSSEGEMR 240

Query: 241 RKHGHDKTSKHDDNSYSEDRRRTDYKNERDHKDDRDKSSRHDDHSYPEDRSRTNY----- 300
           R+    +  K+ + S +  +R+ + K+ ++   DR+ +    + S  + +  + Y     
Sbjct: 241 RRKDRIEDQKYRERSPNHQQRQRNGKDYKEDAGDRNYNRSKSERSVQKGQLDSGYESSEG 300

Query: 301 -KNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDHKDDRDKSSRHDDHSYSEDRRRRN 360
            K  ++H +D+    R  +H   +       +N RD+K+D  +  +H + S +  +R+RN
Sbjct: 301 EKRRKNHYEDKKYRERSPNHQQRQ-------RNGRDYKEDTGEDKKHRERSPNHQQRQRN 360

Query: 361 --DYKNERDHDRGSKYAAQTTYDQSDRKSSKTHSHDSAERYHDRSKRERDSYANNEKVSR 420
             DYK     D+  KY  ++   Q  +++S+ +  D+ +R ++ SK ER +      +  
Sbjct: 361 GRDYKEGTGEDK--KYRERSPEHQHRQRNSRDYKEDTGDRNYNTSKSERYASEGRSNIDA 420

Query: 421 ------RVGESRSYEPNASETPHESRHKHRRPATKLSEEERAARLREMQQDAELHEEQRW 480
                 R+ E+ S   +AS     S +K R  A KLSEEERAA+L++MQ  AELHEEQRW
Sbjct: 421 PKSGGGRISEASSNRYSASSPERGSHYKRRNMAPKLSEEERAAKLKQMQLAAELHEEQRW 480

Query: 481 RRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSSTIEESIRRRTYYSQGKS 505
           +R+K+A E DA EA QN      KNFLD AQKS+YGA +GGS++I ES+RRRTYYSQG+S
Sbjct: 481 KRIKKAEESDAKEAIQNDNA-GGKNFLDTAQKSVYGAAEGGSASIAESVRRRTYYSQGRS 537

[Close]

BLAST of CmoCh04G003880 vs. TrEMBL
Match: V7BR99_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G134100g PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 2.4e-91
Identity = 251/512 (49.02%), Postives = 326/512 (63.67%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQI EE++R EFRLLQE+AG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIQEERDRTEFRLLQEKAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120
           LVP QERL+FLY+SGL+VGK+S S+GFK LE LP +    A    +S + A+VPGALF +
Sbjct: 61  LVPHQERLEFLYDSGLSVGKSSNSEGFKVLEQLPKSDAADAPGSSASKEGASVPGALFEE 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180
           K  SAND WRKLHSDPLL+IRQREQ+ LA++KNNP++MAMI+K++EG + KEK   HK++
Sbjct: 121 KPQSANDTWRKLHSDPLLMIRQREQEELAKIKNNPVKMAMIKKSIEGTEDKEKA--HKKE 180

Query: 181 -RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHD----DNSYSEDRRRTDYK 240
            RKKHR SKSKH   ++  DSED   E ++R    +    H+    D+ Y  D R    K
Sbjct: 181 KRKKHRSSKSKH---KKQSDSEDDPTEGRKRSDNGNIYKNHNKAQSDSGYQSDERENTRK 240

Query: 241 NERDHKDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYK 300
           +  + K  R++S  H              + +R  KD            Y+E     +Y 
Sbjct: 241 DHYEDKKYRERSPGHQ-------------QRQRKGKD------------YNEGADDRNYS 300

Query: 301 NERDHKDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAAQTTYDQSDRKSSKTHS 360
             +  +  R+  S     S   ++RR N Y++        KY  ++   Q  +++ K + 
Sbjct: 301 RSKSERSVRNSQSNPGYESTEVEKRRMNHYEDR-------KYRERSPSHQQRQRNDKDYK 360

Query: 361 HDSAERYHDRSKRER---DSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLS 420
            D+ +R ++RSK ER   +  +N +      G       N   + HE  +K R  A KLS
Sbjct: 361 EDAGDRNYNRSKSERYGSEDQSNIDAPKSGGGRFSETSSNRYSSSHEHGYKRRNVAPKLS 420

Query: 421 EEERAARLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGA 480
           EEERAA+LR+MQ  AE+HEEQRW+R+K+A E DA EA QN    S  NFLD+ QKS+YGA
Sbjct: 421 EEERAAKLRQMQLAAEVHEEQRWKRIKKAEESDAREAVQNNNA-SGNNFLDSTQKSVYGA 474

Query: 481 EKGGSSTIEESIRRRTYYSQGKSDIEANAFRR 505
           +KGGS++I ES+RRRTYYSQG+S  E NAFRR
Sbjct: 481 DKGGSASIAESVRRRTYYSQGRSGGEGNAFRR 474

[Close]

BLAST of CmoCh04G003880 vs. TAIR10
Match: AT2G44200.1 (AT2G44200.1 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor)

HSP 1 Score: 317.0 bits (811), Expect = 2.1e-86
Identity = 250/518 (48.26%), Postives = 323/518 (62.36%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           M +KFLNKKGWHTGSLRNIE VWKAEQK EAEQKKLEELR QI +E+ER EFR LQEQAG
Sbjct: 1   MGMKFLNKKGWHTGSLRNIETVWKAEQKQEAEQKKLEELRLQILQERERSEFRALQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSL--ETLPSTSTPAASSDPSSSKEAAVPGALF 120
           L+P+QERL+FLY+SGLAVGK S S    S   E  P   + A SS  S   + + PGALF
Sbjct: 61  LIPRQERLEFLYDSGLAVGKGSASGSGVSFQKEEQPLAKSEAGSS-ASEKPDQSAPGALF 120

Query: 121 VDKLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHK 180
            +K  SAND+WRKLHSDPLL+IRQREQ+ALA++KNNP++MA+IRK+VE EK K K+ D K
Sbjct: 121 EEKAQSANDSWRKLHSDPLLLIRQREQEALAKIKNNPVKMALIRKSVE-EKGKGKDGDTK 180

Query: 181 RDRKKHRHSKSKH----FSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDY 240
             +KKH+    KH     S +R    ED+  E   RK  H KTS   D  Y  +R R+D 
Sbjct: 181 EHKKKHKRKSGKHQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHY--ERPRSDL 240

Query: 241 KNERDHKDDRD-----KSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDR 300
           ++E   ++ RD     + S  DD     +R  T+Y+  R   DD  K     D+ Y  +R
Sbjct: 241 EDESKGRESRDRHYEKRRSELDDGHKRRERHDTHYERRRSEMDDESKRRESRDNHY--ER 300

Query: 301 RRTDYKNERDHKDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAAQTTYDQSDRK 360
           RR+D  +E   ++  DK          ++ +RR      R  D           D+  R+
Sbjct: 301 RRSDLDDESKRRESHDKHFERQRSDLDDEYKRRESQDKRRRSD---------IDDEPKRR 360

Query: 361 SSKTHSHDSAERYHDRSKR---ERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRR 420
            ++ +     E+Y +RS +   ER+    N K   +  + R  E   S  P+E +++ R+
Sbjct: 361 DARPN-----EKYRNRSPKGGVERE----NLKSYGQEDKKRKAEDLDSGKPNEYQNRRRK 420

Query: 421 PATKLSEEERAARLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQ 480
             +KLSEEERAARL++MQ DAE+HEEQRW RLK+A E DA+EA +N  V + K+FLD A 
Sbjct: 421 GGSKLSEEERAARLKQMQMDAEVHEEQRWTRLKKADETDAVEADKN-KVSTGKSFLDDAN 480

Query: 481 KSMYGAEKGGSSTIEESIRRRTYYSQGKSDIEANAFRR 505
           KS+YG EKGGSSTIEES+RRR+YYSQ  +  E NAFRR
Sbjct: 481 KSVYGVEKGGSSTIEESVRRRSYYSQRGTAAEGNAFRR 493

[Close]

BLAST of CmoCh04G003880 vs. TAIR10
Match: AT2G44195.1 (AT2G44195.1 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-32
Identity = 82/149 (55.03%), Postives = 100/149 (67.11%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGS+RN+E VWKAEQKHEAEQ+K+E          ER EFR +QEQAG
Sbjct: 1   MALKFLNKKGWHTGSIRNVEKVWKAEQKHEAEQEKIE----------ERSEFRAIQEQAG 60

Query: 61  LVPKQ-ERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALF- 120
           LVP++ ERL+FLY+  LAV K          + + S+       +      A +PGALF 
Sbjct: 61  LVPRRPERLEFLYDPELAVAK----------QNVSSSRHGVLFQNQDQRARATIPGALFD 120

Query: 121 -VDKLPSANDAWRKLHSDPLLIIRQREQQ 147
             DK  SAND+WRK HSDPLL+IRQ+EQ+
Sbjct: 121 DDDKRHSANDSWRKFHSDPLLLIRQKEQE 129

[Close]

BLAST of CmoCh04G003880 vs. NCBI nr
Match: gi|659107773|ref|XP_008453851.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo])

HSP 1 Score: 546.6 bits (1407), Expect = 4.6e-152
Identity = 349/507 (68.84%), Postives = 381/507 (75.15%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKL+ELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERLDFLYESGLAVGKAS SDGFKSLETLPS+ST AA+++PSSSKEAA PGALF D
Sbjct: 61  LVPKQERLDFLYESGLAVGKASSSDGFKSLETLPSSSTAAAATEPSSSKEAAAPGALFED 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180
           K  SANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVE EKHK+KNPD KR 
Sbjct: 121 KPHSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEVEKHKDKNPDDKR- 180

Query: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240
                                      +R+KH H K+ +H D+S            ERD+
Sbjct: 181 ---------------------------ERKKHRHSKSKRHKDSS-----------PERDY 240

Query: 241 KDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
            D  D S        PE + R         K D DKSSR                     
Sbjct: 241 -DSEDAS--------PERQRR---------KHDHDKSSR--------------------- 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAAQTTYDQSDRKSSKTHSHDS-A 360
                    HD HS+SEDRR + D KNERD DRGSKYAA+T+YDQSDRK+SK++  DS A
Sbjct: 301 ---------HDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRDSAA 360

Query: 361 ERYHDRSK--RERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERA 420
           +R+HDRSK  R+RDS+ANN+K SRRVGE R YE +ASETP+ESRH+HRRP TKLSEEERA
Sbjct: 361 DRHHDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERA 419

Query: 421 ARLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGS 480
           ARLREMQQDAELHEEQRW+RLK+AAEDDALEAKQN AVPSS+NFLD AQK MYGAEKGGS
Sbjct: 421 ARLREMQQDAELHEEQRWKRLKKAAEDDALEAKQN-AVPSSRNFLDTAQKRMYGAEKGGS 419

Query: 481 STIEESIRRRTYYSQGKSDIEANAFRR 505
           STIEESIRRRTYYSQGKS+IEANAFRR
Sbjct: 481 STIEESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of CmoCh04G003880 vs. NCBI nr
Match: gi|747095900|ref|XP_011095849.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Sesamum indicum])

HSP 1 Score: 355.9 bits (912), Expect = 1.2e-94
Identity = 267/510 (52.35%), Postives = 337/510 (66.08%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEE+ER EFR LQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEERERAEFRQLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERLDFLY+SGLAVGK     GFK+LE+LP T     +S  +S+K++  PGALF D
Sbjct: 61  LVPKQERLDFLYDSGLAVGKGGS--GFKALESLPKTDPETTASTSTSAKQSEAPGALFED 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEG--EKHKEKNPDHK 180
           K  SANDAWRKLHSDPLL+IRQREQ+ALARVKNNPIQMAMIRK+V+   +K K+++ D +
Sbjct: 121 KPQSANDAWRKLHSDPLLLIRQREQEALARVKNNPIQMAMIRKSVQAKNDKDKDQDKDER 180

Query: 181 RDRKKHRHSKSKH---FSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYK 240
           + RKKH   KSKH    S E D DSED            D  +        EDR +   K
Sbjct: 181 KHRKKHHRKKSKHRKHSSSENDSDSED------------DVVTV----GKQEDRHQ---K 240

Query: 241 NERDHKDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYK 300
             +  K  R  +   D     ED  R  Y  ++++KD R   + +  +  S+D++++   
Sbjct: 241 GSKTDKHSRMAAHTSDKELSEEDARRKKYY-DKEYKDRRPSGTHNPKYDKSDDQQKS--- 300

Query: 301 NERDHKDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGS-KYAAQTTYDQSDRKSSKTH 360
             R++KD R   + +  +  S D+++R +YK+ R     S KY  +      D++ +K  
Sbjct: 301 --REYKDRRPSGTHNPINDKSNDQQKR-EYKDRRPSGSHSPKYNKR-----DDQQKNKRS 360

Query: 361 SHDSAERYHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEE 420
            HDS           R+ Y++  +V  R  + RS+  ++ + P    +  RR   KLSEE
Sbjct: 361 YHDS----------RREEYSSERQVESR-HDKRSHFNSSDKPPMHDSNNRRRNTVKLSEE 420

Query: 421 ERAARLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEK 480
           ERAARLREMQ DAE HEEQRW+RLK+AA+ DA EA  + A PS +NFLDAAQKS+YGAEK
Sbjct: 421 ERAARLREMQMDAERHEEQRWKRLKKAADSDAQEAIHDNA-PSGRNFLDAAQKSIYGAEK 465

Query: 481 GGSSTIEESIRRRTYYSQGKSDIEANAFRR 505
           GGSSTIEES+RRRT+Y QG+S  ++NAFRR
Sbjct: 481 GGSSTIEESVRRRTHYLQGRSASDSNAFRR 465

[Close]

BLAST of CmoCh04G003880 vs. NCBI nr
Match: gi|976909598|gb|KVH96690.1| (CBF1-interacting co-repressor CIR, N-terminal domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 262/506 (51.78%), Postives = 327/506 (64.62%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKH+AEQKKLEELRKQIHEE+ER EFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHDAEQKKLEELRKQIHEERERSEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERLDFLY+SGLAVGK + SDGFK+LE+ P+ + P     PSS+ +A+ PGALF D
Sbjct: 61  LVPKQERLDFLYDSGLAVGKGN-SDGFKALESFPAKAEP---EQPSSANKASTPGALFED 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180
           K  SANDAWRKLHSDPLL+I+QREQ+ALARVKNNP+QMAMI K+VE +KHKEK  D ++ 
Sbjct: 121 KPQSANDAWRKLHSDPLLLIKQREQEALARVKNNPVQMAMIHKSVEAKKHKEKTSDGEKH 180

Query: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240
           ++KH   K KH      H S          KH     +  DD    E +R T   +   H
Sbjct: 181 KEKHHRKKLKH----EKHTSS---------KH---HINSDDDVGQGEGQRSTSSSHYSKH 240

Query: 241 KDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           K +       D   Y  +R      + +DH   +      +DH  S+  +R     + DH
Sbjct: 241 KRNIQTERVRDGDRYQHERY-----HGKDHFGPQSTKRDREDHFSSQSAKR----EKEDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAAQTTY-DQSDRKSSKTHSHDSA 360
              +      +DHS S+  +R          DR   Y++Q+   D+ D   S++   D A
Sbjct: 301 FGSQSTKRDREDHSGSQSTKR----------DREGHYSSQSAKRDKEDHFGSQSAKRDEA 360

Query: 361 ERYHDRS-KRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAA 420
           +    +S KR+R+ +  ++   +R GE R + P       E  H  R  + KLSEEERAA
Sbjct: 361 DHSGSQSAKRDREDHIGSQS-GKRDGEDRKHLPPRHHKVGE--HNRRNSSMKLSEEERAA 420

Query: 421 RLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSS 480
           +L+EMQ DAE+HEEQRW+RLKQAA+DDA EA +  A  S +NFLDAA KS++GAEKGGSS
Sbjct: 421 KLKEMQMDAEVHEEQRWKRLKQAADDDAKEATR--ASSSGRNFLDAAHKSVFGAEKGGSS 460

Query: 481 TIEESIRRRTYYSQGKSDIEANAFRR 505
           TIEES+RRRT+YSQ +S  E NAFRR
Sbjct: 481 TIEESVRRRTHYSQRRS--EENAFRR 460

[Close]

BLAST of CmoCh04G003880 vs. NCBI nr
Match: gi|734420363|gb|KHN40750.1| (Pre-mRNA-splicing factor CWC25 like [Glycine soja])

HSP 1 Score: 347.1 bits (889), Expect = 5.4e-92
Identity = 264/549 (48.09%), Postives = 357/549 (65.03%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKL+ELRKQI EE+ER EFRLLQE+AG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIQEERERTEFRLLQEKAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLP---STSTPAASSDPSSSKE-AAVPGA 120
           LVP QERL+FLY+SGL+VGK+S S+GFK+LE LP   +T    +S+  S+SKE A+VPGA
Sbjct: 61  LVPHQERLEFLYDSGLSVGKSSNSEGFKALEQLPKSDATDAAGSSASASASKEGASVPGA 120

Query: 121 LFVDKLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPD 180
           LF +K  SANDAWRKLHSDPLL+IRQREQ+ALA++KNNP++MAMI+K++EG ++KEK   
Sbjct: 121 LFEEKPQSANDAWRKLHSDPLLMIRQREQEALAKIKNNPVKMAMIKKSIEGTENKEKA-- 180

Query: 181 HKRD-RKKHRHSKSKHF--------------------SPERDH-----DSEDASPERQ-R 240
           HK++ RKKHR SKSKH                       +R H     DSE  S E + R
Sbjct: 181 HKKEKRKKHRSSKSKHKKLSDSEDDTTERRKRKTGNEDSDRKHHKAQSDSEYQSSEGEMR 240

Query: 241 RKHGHDKTSKHDDNSYSEDRRRTDYKNERDHKDDRDKSSRHDDHSYPEDRSRTNY----- 300
           R+    +  K+ + S +  +R+ + K+ ++   DR+ +    + S  + +  + Y     
Sbjct: 241 RRKDRIEDQKYRERSPNHQQRQRNGKDYKEDAGDRNYNRSKSERSVQKGQLDSGYESSEG 300

Query: 301 -KNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDHKDDRDKSSRHDDHSYSEDRRRRN 360
            K  ++H +D+    R  +H   +       +N RD+K+D  +  +H + S +  +R+RN
Sbjct: 301 EKRRKNHYEDKKYRERSPNHQQRQ-------RNGRDYKEDTGEDKKHRERSPNHQQRQRN 360

Query: 361 --DYKNERDHDRGSKYAAQTTYDQSDRKSSKTHSHDSAERYHDRSKRERDSYANNEKVSR 420
             DYK     D+  KY  ++   Q  +++S+ +  D+ +R ++ SK ER +      +  
Sbjct: 361 GRDYKEGTGEDK--KYRERSPEHQHRQRNSRDYKEDTGDRNYNTSKSERYASEGRSNIDA 420

Query: 421 ------RVGESRSYEPNASETPHESRHKHRRPATKLSEEERAARLREMQQDAELHEEQRW 480
                 R+ E+ S   +AS     S +K R  A KLSEEERAA+L++MQ  AELHEEQRW
Sbjct: 421 PKSGGGRISEASSNRYSASSPERRSHYKRRNMAPKLSEEERAAKLKQMQLAAELHEEQRW 480

Query: 481 RRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSSTIEESIRRRTYYSQGKS 505
           +R+K+A E DA EA QN      KNFLD AQKS+YGA +GGS++I ES+RRRTYYSQG+S
Sbjct: 481 KRIKKAEESDAKEAIQNDNA-GGKNFLDTAQKSVYGAAEGGSASIAESVRRRTYYSQGRS 537

[Close]

BLAST of CmoCh04G003880 vs. NCBI nr
Match: gi|965600443|dbj|BAT87621.1| (hypothetical protein VIGAN_05101000 [Vigna angularis var. angularis])

HSP 1 Score: 346.7 bits (888), Expect = 7.0e-92
Identity = 264/514 (51.36%), Postives = 341/514 (66.34%), Query Frame = 1


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQI EE+ER EFRLLQE+AG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIQEERERTEFRLLQEKAG 60

Query: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120
           LVP QERL+FLY+SGL+VGK+S S+GFK+LE LP +    A S  +S + A+VPGALF +
Sbjct: 61  LVPHQERLEFLYDSGLSVGKSSNSEGFKALEQLPKSDGTDAPSSSASKEGASVPGALFEE 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180
           K  SANDAWRKLHSDPLL+IRQREQ+ALA++KNNP++MAMI+K++EG  HKEK   HK++
Sbjct: 121 KPQSANDAWRKLHSDPLLMIRQREQEALAKIKNNPVKMAMIKKSIEGTDHKEKA--HKKE 180

Query: 181 -RKKHRHSKSKHFSPERDHDSEDASPE-RQRRKHGHDKTSKHDDNSYSEDRRRTDYKNER 240
            RKKHR SKSKH   ++  DSED   E R+RR    D   KH+       + ++D   E 
Sbjct: 181 KRKKHRSSKSKH---KKHSDSEDDPTEGRKRRTDNEDIDKKHN-------KAQSDSGYES 240

Query: 241 DHKDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNER 300
             +++R K  R++D  Y E RS ++ + +R  KD  + +         +DR     K+ER
Sbjct: 241 GERENRRKD-RYEDKKYRE-RSPSHQQRQRKGKDYEEGA---------DDRNHGRSKSER 300

Query: 301 DHKDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAAQTTYDQSDRKSSKTHSHDS 360
              D +       D      +RRRN Y++        KY  ++   Q  +++ K +  D 
Sbjct: 301 SVYDAQSNPGYESDGG----KRRRNHYEDR-------KYRERSPGHQQRQRNGKDYKEDG 360

Query: 361 AERYHDRSKRERDSYANNEKVS--------RRVGESRSYEPNASETPHESRHKHRRPATK 420
            +R ++RSK ER  YA+ +K +         R  E+ S   +AS   HE  +K R  A K
Sbjct: 361 GDRNYNRSKSER--YASEDKSNIDAPKSGGERFSETSSNRYSASS--HERGYKRRNVAPK 420

Query: 421 LSEEERAARLREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMY 480
           LSEEERA +LR+MQ  AE+HEEQRW+R+K+A E DA E  Q+      KNFLD+ QKS+Y
Sbjct: 421 LSEEERAEKLRQMQLAAEVHEEQRWKRIKKAEESDAREVVQSNNA-GGKNFLDSTQKSVY 475

Query: 481 GAEKGGSSTIEESIRRRTYYSQGKSDIEANAFRR 505
           GA +GGS++I ES+RRRTYYSQG+S  E NAFRR
Sbjct: 481 GAGEGGSASIAESVRRRTYYSQGRSGGEGNAFRR 475

The following BLAST results are available for this feature:

BLAST of CmoCh04G003880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CWC25_HUMAN	8.8e-10	28.40	Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens GN=CWC25 PE=1 SV=1	[more]
CWC25_ASPFU	1.1e-07	29.78	Pre-mRNA-splicing factor cwc25 OS=Neosartorya fumigata (strain ATCC MYA-4609 / A...	[more]

BLAST of CmoCh04G003880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103XTQ7_CYNCS	1.3e-92	51.78	CBF1-interacting co-repressor CIR, N-terminal domain-containing protein OS=Cynar...	[more]
A0A0B2S6B4_GLYSO	3.7e-92	48.09	Pre-mRNA-splicing factor CWC25 like OS=Glycine soja GN=glysoja_015117 PE=4 SV=1	[more]
A0A0S3S470_PHAAN	4.9e-92	51.36	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G101000 PE=...	[more]
I1L084_SOYBN	6.4e-92	48.09	Uncharacterized protein OS=Glycine max GN=GLYMA_09G018000 PE=4 SV=1	[more]
V7BR99_PHAVU	2.4e-91	49.02	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G134100g PE=4 SV=1	[more]

BLAST of CmoCh04G003880 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44200.1	2.1e-86	48.26	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing fact...	[more]
AT2G44195.1	1.7e-32	55.03	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing fact...	[more]

BLAST of CmoCh04G003880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107773\|ref\|XP_008453851.1\|	4.6e-152	68.84	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo]	[more]
gi\|747095900\|ref\|XP_011095849.1\|	1.2e-94	52.35	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Sesamum indicum]	[more]
gi\|976909598\|gb\|KVH96690.1\|	1.8e-92	51.78	CBF1-interacting co-repressor CIR, N-terminal domain-containing protein [Cynara ...	[more]
gi\|734420363\|gb\|KHN40750.1\|	5.4e-92	48.09	Pre-mRNA-splicing factor CWC25 like [Glycine soja]	[more]
gi\|965600443\|dbj\|BAT87621.1\|	7.0e-92	51.36	hypothetical protein VIGAN_05101000 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019339	CIR_N_dom
IPR022209	CWC25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003880.1	CmoCh04G003880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain	PFAM	PF10197	Cir_N	coord: 11..46 score: 5.2
IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain	SMART	SM01083	Cir_N_3	coord: 10..46 score: 9.9
IPR022209	Pre-mRNA splicing factor	PFAM	PF12542	CWC25	coord: 64..155 score: 3.0
None	No IPR available	unknown	Coil	Coil	coord: 22..49 scor
None	No IPR available	PANTHER	PTHR16196	CELL CYCLE CONTROL PROTEIN CWF25	coord: 2..504 score: 2.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003880	Cucsa.094010	Cucumber (Gy14) v1	cgycmoB0197
CmoCh04G003880	CmaCh16G002260	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G003880	CmaCh04G003680	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003880	Cla010701	Watermelon (97103) v1	cmowmB687
CmoCh04G003880	Csa4G025080	Cucumber (Chinese Long) v2	cmocuB700
CmoCh04G003880	MELO3C017635	Melon (DHL92) v3.5.1	cmomeB694
CmoCh04G003880	ClCG07G017100	Watermelon (Charleston Gray)	cmowcgB671
CmoCh04G003880	CSPI04G04220	Wild cucumber (PI 183967)	cmocpiB708
CmoCh04G003880	Lsi07G001280	Bottle gourd (USVL1VR-Ls)	cmolsiB690
CmoCh04G003880	Cp4.1LG14g05340	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G003880	Cp4.1LG01g03440	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003880	MELO3C017635.2	Melon (DHL92) v3.6.1	cmomedB788
CmoCh04G003880	CsaV3_4G004310	Cucumber (Chinese Long) v3	cmocucB0828
CmoCh04G003880	Cla97C07G144130	Watermelon (97103) v2	cmowmbB749
CmoCh04G003880	Bhi01G001996	Wax gourd	cmowgoB0851
CmoCh04G003880	CsGy4G004150	Cucumber (Gy14) v2	cgybcmoB516
CmoCh04G003880	Carg16767	Silver-seed gourd	carcmoB1177

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G003880	CmoCh16G002450	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003880	Wax gourd	cmowgoB0810
CmoCh04G003880	Cucurbita moschata (Rifu)	cmocmoB435
CmoCh04G003880	Watermelon (Charleston Gray)	cmowcgB639
CmoCh04G003880	Cucurbita pepo (Zucchini)	cmocpeB707
CmoCh04G003880	Bottle gourd (USVL1VR-Ls)	cmolsiB614
CmoCh04G003880	Silver-seed gourd	carcmoB0514
CmoCh04G003880	Silver-seed gourd	carcmoB0972
CmoCh04G003880	Cucumber (Chinese Long) v3	cmocucB0871
CmoCh04G003880	Watermelon (97103) v2	cmowmbB678