Cp4.1LG14g05340 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g05340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor
Location	Cp4.1LG14 : 1056751 .. 1066441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGGTATCTTTCCATTTATTGTTATTTCCATTTATTACTATTTCCATATCCTTGTAATTTATTTGATTATAAATAAGATAACTTTCACACCATTTAGGTGTGGTGGATTAATCAAACATTCACGCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGTATGTTTTATCTTCTATATTGTTGTTAACAGTTTTAATTATGCATTTGATTCATAGTCTGTAAGTTTCAAATCGGATTCGATCTCTGAATAGATGAGGATTGGAAACGTTGCGTAGATTAGGGTTACCGCCAAGGCGATGGTTAGGGCTTAAGTAGTTCGATTGTTTTGAGGAATATTTAAATTTTGGACTATATGGCGTTCCAGGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCACTGAACCATCTAGTTCCAAGGTACTGTTCCACTCGCTGTTAATTTGTGTGCTTCGGCTATCTCTTCGTGGTGCTCAATTATGACTTTTTTTTGTTGCTTTCTTGTGTTGTTTCTGCAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACTCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAACAAGCTCTTGCCCGCGTAAAGAACAATCCTATTCAAATGGCTATGATTCGCAAGACTGTAAGTTCATTTTTTCCTTGATGTTTTTTCTTCTCCTTATATCGTTTTAACCCTATCAAGTTCTAGAACTTTTACTGTCCTAACATGGGCTTTGGAAATTATATTGAAATATCCTTTTTCCATTCATTATTCTCTTGAGAAGGTTTCTGAACTATGTCCATGGACACTTTGTGGTAGAGAAAGCTGGTGGCTTATCTTAATTCCAAGTTATCCTTTGAGTTGATGTAATGGATTTCTCTGCATTTCTCACCCTGTCGATAGGAACTAAAGATGAATCTATGATCAGAAAGTTCCTTTCGGTATATCTTCATGACTAGTCAATTGTGGCAAAAGTGGCAGCTTGTTGATAAGGAATCAACCCGAGAGAAAGCTTTGATACCAAATGATAAGGAATCATTACAAGGGAAGTAAGATTCGTATTACCTTGTTGATCGAATATCTCAAGGTAAGAATACTTGTTTGAGATTCGAATCACTCCACAAACAAGATCGATCATGTCTAACTTGAATGATTCTAAACATGCAATCTAAACTACATAGAATTGCAAGGAAACTTAGTCATTTGCTAAAGGAAAGCACAAATGCTCATTTTACTGCATTTGCTAAGTCTCCTTACAAATACAACACACATGGTTCTATATAACCTCAAAGGAAATATATATCTGATCTTGAGCCTAAAGCTCTTATACCAAATGATAAGGAATAAGAGATTTCCCTTGAGTTGATTCCTTATCACTTGTGTTAAACAATTCCCCCGACAAATAATGAACAGCCATATCAAGAATGTTCTGGTACAATAATTTTCATTCTTGTAATAGAATCTCTGTTTATCTCATGATCGTATTATCTGCAAGCTCTTTCCCTTGTTTGACTTGAAGAATAGATCTGAGGTGTTTTCTTCTTTAAAAAATATATTAGGTTGAAGTGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGAAGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGCTTCTTCTCCAGAAAGAGATTATGATTCTGAAAGTGTCAGCCCTGAGATGCAGAGAAGGAACCATGATCGTGACAAGAGTTCAAAACATGATGTTCATTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATGTGAACGAGAGGGATCGTGATAGAGGCTCGAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTGAAAGAGAGACAGAGATTCTTATACTCACAATGAAAAGGACAGTACAAAAGTGGGGGAATCAAGAACTCGTGAACCGAATGCTTCTAAATCTCCTTACGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGGGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTCGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTTGTTGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGGTAATGCACATCACTTGTATACTTTGCTTGTGGTTATTGTTTAACATCATCCAATGTGATCCAAGTCATGTTGATCACATTCATATATGGTTTGTTTAAATTAAATTGCTGATTTTTTTTCTAATGATATACTGAAATTATGAACCTGAATCACATTGGATGTATACATCTCTCAATGAACGAAATTTGCCTAAGGAAAGTGGTCTTAATATGTATACTCTATAGTCAAAGTCTGTCTTGTTTGGGCAACTTTTGAAGATGCCCAATTAATGTATTCAATGTTCAGCTTATTATTGTACTCTTTAGCTTAGTTTTATTCAGGTAGTTTAATGGTCAGAATTTTATGCAATGTTTAGTTTTATTAAATTAATACGTTACTTTAATTTTTAAATTTAAAATTATCTCACTCATTTAATATTAATATTAATGATGTGCTGTAGTTTAGTGGTGAGAATTTCACGTTGTGGACATGGAGACCTGGGCTCGAATCCCAGCAGCCACAATTTTACTTCTTAATCTTAATCTTCATGCCATATTTGATTTTAGTTAATTTATTTTATAAATTTTAGCCACAATCTTACTTTTTAATCTTAATCTTCCTGCCATATTTGGTTTTATTACTTTATTTTATAAAATTTAAATTAATCTCTAGTTAATTTATTTTATAAATTTTAGCCACAATCTTACTTTTTAATCTTAATCTTCCTGCCATATTTGGTTTTAATTACTTTATTTTATAATTTTTAAATTAATCTTGCTTATTTAGTCTTCATATTAATTGTGTGGCTGTAGTTTAGTGGTGAGAATTCCACGTTGTGGTTGTGGAGACCTGGGCTCGAATCCCAGCAGCCACAATCTTACGTTTTAGTTACTTTATTTTATAAATTTTAAATTAATCTCGCTCACTTAATCCTAATATTAATGGTTTTAGTTACTTTATTTTATAAATTTTAAATTAATCTCGCTCACTTAATCCTAATATTAATTGTGGCTGTAGTTTAATGGTGAGAATTCCACGTTGTGGTTGTGGAGACCTGGGCTCAAATCCCAGTTGCCACAACAATAGTAGTAACATGGAGACCCCGGCAGGGCACACCCACAATGATTTCTAATGCACCATTATTCTACGCATTAAAATTTCACTACACTATACTCTTCTAACTCGATGGTAATTAGCATATTCACAAGAATAAAGATTTATATTTTCTTTATGGTATACGGATTCAATTCACAATGGTCCGTTTGATTATAGCATTCAAAAGCAACAAATTCTCATGATATCATGTTATGTCTATGTATTCTTTATCTTTTCTTAAAGAAAGTTCGATTTTCATAAAATATGATCTTCCATGTCAAACTTTTAGCCTTCTCTTCTCGGTCAAGACCAAGCTTCAACATGGTATTTACCAGCCTTCTCCAACGCCCTTAGCCACCTTACAGCAGATTCCCGTGGAACCCGAGTTTCTTTCGATATAATTTCCTCGAAAGTTGACCATACATCTGCAGGCATTTTTGTGGAAGAGCCTGCAACATATACAGCAGCACCATCCTTGAGCATGTTCCAAATCCTTTGACTCTGTTCAAGCATCTTATGTTGCACGTAAACCTTCCGCGGTTGATCTCTGGAAAACGCGACATAAAAGCCTCCACCTTTCTCCTCTGATAGTACTCCGTGATGTTTCAAATGCGATAACCAGAAATCTCGATATAGGAAGTCGTTGTCCTCATTTCGACAACCGAAGAAAAACAAAACTGGAGCAGTTGACATGGAGGGATTCTCCATGGACCTTTCCTCTACAAATCCTCTGAAGGGTGCACAACCTGTTCCGGGTCCAACGAGAATCAAAGGAAGAGATGGGGATGGAGCGGGAAGCGAACCCTTATGGAACCACACCGGAATACGAACGCCTGTATCAAACATATCCATATATACATCAAGTAAATCAAATTCAGTGCTATGTAAATAACGAATGCCGAATTCTATTCTACGTACATTGTTCGGCATCAAGTCCAGCAAGCCAACTCGAGCAAAGACCCACCCGATTCCTTTTATATGGTGTCGTCCAAGATACTACGTTTACGGTTAAGTGCACCTGATTCGGGTGAGCTAAAGGGGAAGAAGATATGGAGAATGATCTTGTTTTCAATGGAGGAACCAACTGAACCAACCAATCAAATGGCATTTTCACAGAAGGGAAATCTTCTAATACCTGTAGTATTACCAAGACAAGTAAATGGGATAATTTCATCTTCTAGCTCTCTATTGGGTATTATATCTTAAGCTAAAAGAAAAATGTAGCACAAATATTTGGGGCAGCATGCATTTACTTAAATGTTTGGAATCACCTCAAGAACACTTCTTCGTTCCTTTTGATTGTACTGATATAAATCATCTCTTCCTTCAGGTGACGCAAAATATTGAAGTCTTTCCTTTTCATGTGGAGCTGTTGCATAGTAACTCATAACCTGCGAGAAAAATTATGTTTGGGAATATAAATGAATAAATAAAACAGAAGCAAGGTTGTAATTTCATCTGAACACCCTGAAAATAAAATGAGAGTAATGAAAAAATGAAGAGGTTCGAAGGACTTGCCTCGAAAAAATAGCGTCGAGGAGAAGCTGATGCAATATCCATTGTCAGTTCAATAAAAGTTTTCAATTTGATAGGAACCATTTGGGTAGCAGTTGGGATGGGATCCTGTTTGCGCCTATTTCTAGGAGAAATCTGAAATTAGAAGTGCTATTTGGTAAGTAGAAGATTTAATACAGCAACCTTCATATAATGATAAAGATTAATGTCGACAGAGTAGGCCTCATAGAAACGTAAACTTTCTTTGTTTATTGCACACATCGGTTGGGGAGGAGAGCGAAACATTCTTTATAAGGGTGTAAAAACCTCTCCCTTGCAAACGCGTTTTAAAAACCTTGAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAACCAGATACCGTGCGATGTGCCAGCGAGGAGGCTGAGCCCTGAAGGGGGGTGGACACGAGACAGTGTGCCATCAAGGATGCTGGGCCTTGAAGGTGGTAGATTGGGGGGTCCCACATCGATTGGAGAAGGGAACGAGTGCCAGCGAAGACGCTGGGCACCGAAGGGAGGTGGATTGTAAGATCCCACATCGGTTGGGGAGGATAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTATCTAGCAGACGCGTTTTAAAAACCTCGAGGGGAAGCCCAAAAGGGAAAGCCCAAAGAAGACAATATCTACTAGCGGTGGGCTTGGGTTTGAAAAAGATAACAGCTACAGATAAAACCGCAGTACAATGTGCTAACATCAAACACAATGAAAATATGAAACACTTGGCCCCTTAGCATTGTGTGATGTACTTGTGATAAAAAAACAACCAACCACTACCTATTTTCTAGCACAAGTACATCACAAACAATGAAAATAGAATCTTTGAGTATTTCCCAAAAAAAAAAAATTGAAATAAGATGATTCAAGAATTTACAAACTGATAAATCAAACTTACCGTAATAAATGATTCAGGGTCCAAATTGCAACGTTGTATGAAATCATTTACAGCAGCAGGGTTCTGACTGGGAAGAACCTCGAGGACATCACCAACTTCATATTCTATTACCTAAAATTAGTTCAAAATGCAATCACTGAGTTACATAGAAAAAAACAATGAAAAATAAGTAATGAAAATTTGGAAATTACCAACTTACAGAAGAAACAAATTCAAATTCAAAGTGGCGCACGTCCTTTCCAGAGCCTACTTTACTCAAACGCTCATTTTTTATCTACATGAAAAAAGAAAAATGAGAATTTAGAATATGAAAAGGAAATATTGCGAACAGCTCTCAAGATAAAAATGAAATTTCTATTCCAAAGAACTGAGACAAAGAAAGTACGAGATGTAACATTCTTTGGTTGGAGAGGCGAACGAAACATTTCTTATAAGGGTATGGAAACCTCTCCCTAGGAGAGGCATTTTAAAATCCTTGAGAGGAAGCCTGAAAGGGAAAGCCCAAAAAGGACAGTATCTGCTAGCGGTGAGCTTGGGCTGTTACAAATGGTATCAGAGTTAGACACCAGGCGATATGCCAGCGCCCCAAGGGTGTGGATTGTGAAATTCCACATCGGTTGGAGAGGCGAACGAAACATTTCTTATAAGGATGTGGAAACGTCTCCCTAGGAGACGCAGTTTAAGAACTTTGAGGGGAAGCTCAAAAGGAAAAATCCAAAGAGGAGAATATCTACTAGCAATGGGCTTGGACTTGCTGTTACATGTCTTCCCTAGCCTTCCAAGGAAGATGACCCGTATACCACTTTGTAAGGTTTCTCCTGCTGATTGTTCCAAAAGCACAATACACATAACCACCAATTTAAGAAGGGGTCTAATCCTCCTTACAACCATAGCTCCTAAGCTAATGACACAAAACATAACGTAACACAACATCAGACATCATATAACTAAATCCTAAACTCTAAAATCAAACATCACAAAATATATTTATACTTCCATACAACATTTAGAGACTAATGGCATAGCGAATTCCTTCTCTGCCCTTCATAACATAATATAAGTATTTACTATTGGGGTCTCACATTATGTACTTTACATTTTTTGTTTTCTTTGTCTAAGTGGTTGCCTTGTGAGAACCATTGAGGAGTACGCAAACTGAGCCAAATACTCCTAAATATAAAAGTTATGTTCAGTAAGATACTCACATGCATGATACTACAAAGCTAGCAAACTATATCTCAAATTCCCAATTCTGTTCAATTAATCAATCACACCACAAGACATGCCAAGTTTTTCCTCATCAAGAATTTTGTGGGTTTTGCAAAGAAGTTCAGACAATGCGAATTATGTTATCAGGAAGCTATCGACAATCACCTCGATAGGGGAAATGAAAAACTGGTTCACAAGGGTTCAAACCTGAATTCAGCTTCCATCCCATGATACCCATTGCTCTTGTATCACAACCATATACAAGAAAATCTATATATATATTGACTGATGTCAGAATTTGAGGTGAAATAATATGATCGATTAGCGAAGGTTTAATACCATATTAAGAAGGCAATCAGGTTTTTTCTTTCCATGAGAAAATTTTCCTGGAGACATCAAGCGAGCCCTCTCAATTTGCATCTCCATGTTCTTCAAATCTAAGAGACACAAGGAATATCAAGTGGTCAATAAATTGTATGAAGGCTACTAAAAGATAAATTAGTATCACATTAATTGTATAAACAATTAGAAGAATATCATTTACAGAATAAAAAGAAAAAATACACTTCTGTTCCCCAAGGTTTGATTTATATTGCATTTGGGTTTAAAGGCTTCAAATACCATTTTTGCTCCTCGTCGTCAACTTGACGTTAATTGATTGAAAGTTGACAACAAAAACCAAGAATGCTAACAACAAAACCCCAAAAAGAGATTATTCCAAATTTAAAAGGTTGAAATGTCGAGTTTGAAACCTATGAGATCCCATATTGGTTAGAGAGAGGAACGAAGCATTCCTTATAAGGATGTGGAAGCCTCTCCCTAGCAGACACATTTTAGAACTTTGAGGGGAAGCTCAGAAAGGAAAGCCCAAAGAGGACAATATTGACTAGCAGTGGGCTTGGGCTGTACAAATGGTATCAGAGCCAAGTTCCAGGCGGTGTGCTAACGAGGAGCTGGGACCTTAAGGGGGTGGATTGTGAGATCCCACATTGGTTAGAGAGGGGAACGAAACATTCTTTATGAGGGTGTGGAAACCCCTCCCTAGCAGACGCGTTTTAAAACCTAGAGGGGAAGCCCGGAAGGGAAAACCCAAAGAGAACAATATCTGCTAGCGGTGGGCTTGAGTTATTACAAAACCTCACGAACCCAAATATAATCTAAATCAAGTCTTAGGGACCAAAAGTGTATTTTATCTCAAAATAAACTAGAAACACAAGTAGATGCTGAACTGATCAAATATCAGTAGATTTTTGTTAGTGTAAACAAAGTCCAGAACCTATAGCCATCTTTTTACCCACTATTTGTTCGCTTAGTGAAATCTAAATCTGCCATTAAAGCCAACATCTGAATTCTCCATTTTTTACATGGTATGTTAACTGAACCAGGACAGAGGACCAGAAGTAGAAAATTCATCTTCATCAATTGTTATTCCATTGCATTACGCGTTTTGGATAAAAAAATCAAACTTTCATTAACAAAAATGAAAGGATACAATTGTCGTTTTATTGCACTCTTCATTATGAATATTCAAGAAACTAGCGTACCTGAGGTTAATTGTGAATTCAACTTCCCCACATTGTGATATGCAACTTGAATGCTTGATTGATCAATTAATGTGTCGCTCGAAAACATAAAATCAATGCCTTTCGGGAAAAACATTGGATTAGTATCACTCAACGAGCTCCACAATGATAACATCCAAGGATCTAGAGCAGCTTCATACCTGGCATAGAGCATTGATCTTTCAGATCAATTAACTTTCTATCGTTGAAAAATGCTAGCACAGAAAGACATAGAAAACATTCAAGTAACTACAGTTGTAAATGTATTCACTAACAAAATAAAACCAATCCCTAATGAAACTTCCTATCGGTTTGAAGATCATGGCTGGATTTACTTGAGGGGAAGGTAGATCAGACGGAAAGACACGGAAATAGCTTTTTCTAAGAATCATTCAACTAAATTAGTAGATTAAAGGAAGCCTACCCCGAATGGTGTTGATCATCACCTAAGCCTCTTTCCAGAATGGCCCTTGCTCCCAAATCAGAAAGTCTTTTGTCAAGCTTTTTTGCAACAAACTGTAGCGTACATTAGCAGGTACCTTAACATATCATACCTCAAAATTACAAGCCAATCAATTTCTAATCATAAAATTCTGGACTAGCACGTCTGAGATGCGTGAATGAAATAAACTTCGTAGTGTAGAAAAAAAAATGGGGAATGCATGAATTAATTTTACTTCCAAAGAAAAGGAGAAGAGATATTACATTATATTTTTGATAACTAGAATCACCTAATCCAAATACAGCATAAGGTACTCCTTTGAGCCAAGAATGATTTAAACTTCTTTGCAGAAGGAACCTCCAAAATCCCTGA

mRNA sequence

ATAGGTATCTTTCCATTTATTGTTATTTCCATTTATTACTATTTCCATATCCTTGTAATTTATTTGATTATAAATAAGATAACTTTCACACCATTTAGGTGTGGTGGATTAATCAAACATTCACGCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCACTGAACCATCTAGTTCCAAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACTCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAACAAGCTCTTGCCCGCGTAAAGAACAATCCTATTCAAATGGCTATGATTCGCAAGACTGTTGAAGTGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGAAGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGCTTCTTCTCCAGAAAGAGATTATGATTCTGAAAGTGTCAGCCCTGAGATGCAGAGAAGGAACCATGATCGTGACAAGAGTTCAAAACATGATGTTCATTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATGTGAACGAGAGGGATCGTGATAGAGGCTCGAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAACAGAGATTCTTATACTCACAATGAAAAGGACAGTACAAAAGTGGGGGAATCAAGAACTCGTGAACCGAATGCTTCTAAATCTCCTTACGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGGGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTCGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTTGTTGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGAAGGAACCTCCAAAATCCCTGA

Coding sequence (CDS)

ATGGCTATGATTCGCAAGACTGTTGAAGTGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGAAGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGCTTCTTCTCCAGAAAGAGATTATGATTCTGAAAGTGTCAGCCCTGAGATGCAGAGAAGGAACCATGATCGTGACAAGAGTTCAAAACATGATGTTCATTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATGTGAACGAGAGGGATCGTGATAGAGGCTCGAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAACAGAGATTCTTATACTCACAATGAAAAGGACAGTACAAAAGTGGGGGAATCAAGAACTCGTGAACCGAATGCTTCTAAATCTCCTTACGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGGGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTCGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTTGTTGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGAAGGAACCTCCAAAATCCCTGA

Protein sequence

MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDRDKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDNRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWRTYYSQGKSEIEANAFRRRNLQNP

Homology

[Close]

BLAST of Cp4.1LG14g05340 vs. TrEMBL
Match: A0A0A0KU62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025080 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 9.4e-92
Identity = 204/261 (78.16%), Postives = 220/261 (84.29%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE VSPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDVSPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK +  NERDRDRGSKY      DQSDRKT KSNPHD  A +R+
Sbjct: 218 DKSSRHDGHSHSEDRRSKAETKNERDRDRGSKYAARTSYDQSDRKTFKSNPHDS-AADRY 277

Query: 121 HD----NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLRE 180
           HD    +RDSY  N++DS +VGE R  E NAS++P E RH+HRRP TKLSEE RAARLRE
Sbjct: 278 HDRSKRDRDSYATNDRDSRRVGELRYYESNASETPNESRHRHRRPTTKLSEEERAARLRE 337

Query: 181 MQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEES 240
           MQQDAE HEEQR++RLKKA EDDALEA+QNAVPSSRNFLD AQKRMY AEKGGSSTIEES
Sbjct: 338 MQQDAELHEEQRFKRLKKADEDDALEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTIEES 397

Query: 241 ICWRTYYSQGKSEIEANAFRR 252
           I  RTYYSQGKS+IEANAFRR
Sbjct: 398 IRRRTYYSQGKSQIEANAFRR 417

[Close]

BLAST of Cp4.1LG14g05340 vs. TrEMBL
Match: A0A0D2PL17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G008200 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.9e-32
Identity = 117/275 (42.55%), Postives = 153/275 (55.64%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRK+V  +K K+K+PD K  RKKH  S SK RK SS +R                  
Sbjct: 164 MAMIRKSVVEKKQKEKSPDHKEHRKKHHRSSSKHRKHSSSKR------------------ 223

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDN--R 120
                   HSYSED  SK D  ++    + S Y+   RKT   + H+    ER   +  R
Sbjct: 224 --------HSYSEDDTSKEDKKDKNHHRKRSDYEGHYRKTESDSEHELKETEREEKSHRR 283

Query: 121 DSYTHNEKDSTKVGESRT-REPNASKSP---------------YEPR------HKHRRPA 180
             Y ++++D  K    ++ R+  +S++P               Y+ R      +K R  +
Sbjct: 284 QKYGYDDQDVDKRSHDKSKRDKYSSQAPRSIDADKNQEKDRRSYDHRDTGPRDNKRRGVS 343

Query: 181 TKLSEEGRAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRM 240
            KLSEE RAARLREMQ+DAE HEEQRW+RLKKA E+DA EA  ++    +NFLD A + +
Sbjct: 344 HKLSEEERAARLREMQEDAELHEEQRWKRLKKAEENDAQEATLSSTSVGKNFLDAANRSI 403

Query: 241 YGAEKGGSSTIEESICWRTYYSQGKSEIEANAFRR 252
           YGAEKGGSSTIEES+  R +YSQG+ E E NAFRR
Sbjct: 404 YGAEKGGSSTIEESVRRRAHYSQGRYESEGNAFRR 412

[Close]

BLAST of Cp4.1LG14g05340 vs. TrEMBL
Match: A0A0B0PCG0_GOSAR (Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 116/261 (44.44%), Postives = 151/261 (57.85%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPER-DYDSESVSPEMQR-RNH 60
           MAMIRK+V  +K K+K+PD K  RKKH  S SK RK SS +R  Y  +  S E ++ +NH
Sbjct: 164 MAMIRKSVVEKKQKEKSPDHKEHRKKHHRSSSKHRKHSSSKRHSYSEDDTSKEDKKDKNH 223

Query: 61  DRDKSS----KHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERH 120
            R +S      H   S SE    +T+   +  R +   YD  D             ++R 
Sbjct: 224 HRKRSDYEGHYHRTESDSEHELKETEREEKSHRRQKYGYDDQD------------VDKRS 283

Query: 121 HD--NRDSYTHNEKDSTKVGESRTREPNA-SKSPYEPRHKHRRPAT-KLSEEGRAARLRE 180
           HD   RD Y+     S    +++ ++  +       PR   RR  + KLSEE RAARLRE
Sbjct: 284 HDKSKRDKYSSQAPRSIDADKNQEKDLRSYDHRDTGPRDNKRRGVSHKLSEEERAARLRE 343

Query: 181 MQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEES 240
           MQ+DAE HEEQRW+RLKKA E+DA EA  ++    +NFLD A + +YGAEKGGSSTIEES
Sbjct: 344 MQEDAELHEEQRWKRLKKAEENDAREATLSSTSVGKNFLDAANRSIYGAEKGGSSTIEES 403

Query: 241 ICWRTYYSQGKSEIEANAFRR 252
           +  R +YSQG+ E E NAFRR
Sbjct: 404 VRRRAHYSQGRYESEGNAFRR 412

[Close]

BLAST of Cp4.1LG14g05340 vs. TrEMBL
Match: A0A0B0P730_GOSAR (Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.6e-30
Identity = 115/260 (44.23%), Postives = 150/260 (57.69%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPER-DYDSESVSPEMQR-RNH 60
           MAMIRK+V  +K K+K+PD K  RKKH  S SK RK SS +R  Y  +  S E ++ +NH
Sbjct: 164 MAMIRKSVVEKKQKEKSPDHKEHRKKHHRSSSKHRKHSSSKRHSYSEDDTSKEDKKDKNH 223

Query: 61  DRDKSS----KHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERH 120
            R +S      H   S SE    +T+   +  R +   YD  D             ++R 
Sbjct: 224 HRKRSDYEGHYHRTESDSEHELKETEREEKSHRRQKYGYDDQD------------VDKRS 283

Query: 121 HD--NRDSYTHNEKDSTKVGESRTREPNA-SKSPYEPRHKHRRPAT-KLSEEGRAARLRE 180
           HD   RD Y+     S    +++ ++  +       PR   RR  + KLSEE RAARLRE
Sbjct: 284 HDKSKRDKYSSQAPRSIDADKNQEKDLRSYDHRDTGPRDNKRRGVSHKLSEEERAARLRE 343

Query: 181 MQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEES 240
           MQ+DAE HEEQRW+RLKKA E+DA EA  ++    +NFLD A + +YGAEKGGSSTIEES
Sbjct: 344 MQEDAELHEEQRWKRLKKAEENDAREATLSSTSVGKNFLDAANRSIYGAEKGGSSTIEES 403

Query: 241 ICWRTYYSQGKSEIEANAFR 251
           +  R +YSQG+ E E NAFR
Sbjct: 404 VRRRAHYSQGRYESEGNAFR 411

[Close]

BLAST of Cp4.1LG14g05340 vs. TrEMBL
Match: W9R253_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017969 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-30
Identity = 116/257 (45.14%), Postives = 154/257 (59.92%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MA IRK+VE +  K +  D+K  RKKHR S SK +K SS  ++        E +R++   
Sbjct: 162 MARIRKSVEGKGKKSR--DEKEHRKKHRDSSSKHQKHSSSGKE--------EERRKSR-- 221

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEE--RHHDNR 120
            KS+ HD HS SE+ R K+   +  D+   S+ D+S RK+ +S  + Y + +   H    
Sbjct: 222 -KSANHDKHSDSEEERRKSRKSSNHDKHSDSE-DESRRKSSRSERNGYRSSKYKEHSLGG 281

Query: 121 DSYTHNEKDSTKVGESRTREPNASKSPYEPR----HKHRRPATKLSEEGRAARLREMQQD 180
            S     KDS    +         K P E R    ++ R  A KLSEE RAARLREMQ D
Sbjct: 282 QSGPETVKDSRHFVKGNNDRSEKEKYPTEDRSESHYRRRNVAPKLSEEERAARLREMQMD 341

Query: 181 AEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWR 240
           AE HEEQRW+RLKKA  DDA +A ++A+   +NFLD AQK +YGAE+GGSS+I ES+  R
Sbjct: 342 AEVHEEQRWKRLKKAEVDDARQASRDAISKGKNFLDAAQKNVYGAEEGGSSSIAESVRRR 401

Query: 241 TYYSQGKSEIEANAFRR 252
           T+YSQG+SE + NAFRR
Sbjct: 402 THYSQGRSE-QGNAFRR 403

[Close]

BLAST of Cp4.1LG14g05340 vs. TAIR10
Match: AT2G44200.1 (AT2G44200.1 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-24
Identity = 97/254 (38.19%), Postives = 136/254 (53.54%), Query Frame = 1


Query: 11  EKHKDKNP---DDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDRDKSSK-- 70
           ++H +K     DD  +R++   +  +RR++   +     ES     +RR  D D  SK  
Sbjct: 247 DRHYEKRRSELDDGHKRRERHDTHYERRRSEMDDESKRRESRDNHYERRRSDLDDESKRR 306

Query: 71  --HDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDR-KTPKSNPHDYYAEER-----HHDN 130
             HD H   +      +Y     +D+  + D  D  K   + P++ Y           +N
Sbjct: 307 ESHDKHFERQRSDLDDEYKRRESQDKRRRSDIDDEPKRRDARPNEKYRNRSPKGGVEREN 366

Query: 131 RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQDAEF 190
             SY   +K        R  E   S  P E +++ R+  +KLSEE RAARL++MQ DAE 
Sbjct: 367 LKSYGQEDK-------KRKAEDLDSGKPNEYQNRRRKGGSKLSEEERAARLKQMQMDAEV 426

Query: 191 HEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWRTYY 250
           HEEQRW RLKKA E DA+EA++N V + ++FLD A K +YG EKGGSSTIEES+  R+YY
Sbjct: 427 HEEQRWTRLKKADETDAVEADKNKVSTGKSFLDDANKSVYGVEKGGSSTIEESVRRRSYY 486

Query: 251 SQGKSEIEANAFRR 252
           SQ  +  E NAFRR
Sbjct: 487 SQRGTAAEGNAFRR 493

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: gi|659107773|ref|XP_008453851.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 1.0e-94
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE  SPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDASPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK D  NERDRDRGSKY      DQSDRKT KSNP D  A +RH
Sbjct: 218 DKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRDS-AADRH 277

Query: 121 HD------NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARL 180
           HD      +RDS+ +N+KDS +VGE R  E +AS++P E RH+HRRP TKLSEE RAARL
Sbjct: 278 HDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERAARL 337

Query: 181 REMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 240
           REMQQDAE HEEQRW+RLKKAAEDDALEA+QNAVPSSRNFLDTAQKRMYGAEKGGSSTIE
Sbjct: 338 REMQQDAELHEEQRWKRLKKAAEDDALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 397

Query: 241 ESICWRTYYSQGKSEIEANAFRR 252
           ESI  RTYYSQGKSEIEANAFRR
Sbjct: 398 ESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: gi|449458323|ref|XP_004146897.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 1.4e-91
Identity = 204/261 (78.16%), Postives = 220/261 (84.29%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE VSPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDVSPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK +  NERDRDRGSKY      DQSDRKT KSNPHD  A +R+
Sbjct: 218 DKSSRHDGHSHSEDRRSKAETKNERDRDRGSKYAARTSYDQSDRKTFKSNPHDS-AADRY 277

Query: 121 HD----NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLRE 180
           HD    +RDSY  N++DS +VGE R  E NAS++P E RH+HRRP TKLSEE RAARLRE
Sbjct: 278 HDRSKRDRDSYATNDRDSRRVGELRYYESNASETPNESRHRHRRPTTKLSEEERAARLRE 337

Query: 181 MQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEES 240
           MQQDAE HEEQR++RLKKA EDDALEA+QNAVPSSRNFLD AQKRMY AEKGGSSTIEES
Sbjct: 338 MQQDAELHEEQRFKRLKKADEDDALEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTIEES 397

Query: 241 ICWRTYYSQGKSEIEANAFRR 252
           I  RTYYSQGKS+IEANAFRR
Sbjct: 398 IRRRTYYSQGKSQIEANAFRR 417

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: gi|1009111497|ref|XP_015901238.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba])

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 123/258 (47.67%), Postives = 151/258 (58.53%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MA+IRK+V+ +KHK K+ D K  RKKH HS SK  + SS        S + E++RR  D 
Sbjct: 159 MAIIRKSVDEKKHKGKSHDKKEHRKKHHHSSSKHERHSS--------SHTIEVERRKPDH 218

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
            K S +D HS SED   K     ER+  R  KY       QSD +T KS   D  A +R 
Sbjct: 219 RKGSNYDKHSDSEDESHKKRSRGERNSYRDLKYRERSPGGQSDPETVKSGRQD--AVKRS 278

Query: 121 HDNRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQD 180
           H+  +      +      ES+           E  HK R  A KLSEE RAA+LREMQ+D
Sbjct: 279 HERSEQGQCPSEQGRYTVESQR----------ESHHKRRYVAPKLSEEERAAKLREMQED 338

Query: 181 AEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWR 240
           AE HEEQRW+RLKKA EDDA EA ++ + S +NFL  A + +YGAEKGGSSTIEES+  R
Sbjct: 339 AELHEEQRWKRLKKAEEDDAREATRDGLSSGKNFLHAAHRSVYGAEKGGSSTIEESVRRR 396

Query: 241 TYYSQGKSEI-EANAFRR 252
            YYSQG+S   E NAFRR
Sbjct: 399 AYYSQGRSSASEGNAFRR 396

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: gi|1009172647|ref|XP_015867386.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba])

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 121/258 (46.90%), Postives = 150/258 (58.14%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MA+IRK+V+ +KHK K+ D K  RKKH HS SK  + SS        S + E++RR  D 
Sbjct: 159 MAIIRKSVDEKKHKGKSHDKKEHRKKHHHSSSKHERHSS--------SHTIEVERRKPDH 218

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
            K S +D HS SED   K     ER+  R  KY       QSD +T K+   D  A +R 
Sbjct: 219 RKGSNYDKHSDSEDESHKKRSRGERNSYRDLKYRERSPGGQSDPETVKNGRQD--AVKRS 278

Query: 121 HDNRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQD 180
           H+  +      +      ES+           E  HK R  A KLSEE RAA+LREMQ+D
Sbjct: 279 HERSEQGKCPSEQGRYTVESQR----------ELHHKRRYVAPKLSEEERAAKLREMQED 338

Query: 181 AEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWR 240
           AE HEEQRW+RLKKA EDDA EA ++ +   +NFL  A + +YGAEKGGSSTIEES+  R
Sbjct: 339 AELHEEQRWKRLKKAEEDDAREATRDGLSGGKNFLHAAHRSVYGAEKGGSSTIEESVRRR 396

Query: 241 TYYSQGKSEI-EANAFRR 252
            YYSQG+S   E NAFRR
Sbjct: 399 AYYSQGRSSASEGNAFRR 396

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: gi|823162973|ref|XP_012481416.1| (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Gossypium raimondii])

HSP 1 Score: 146.4 bits (368), Expect = 7.1e-32
Identity = 117/275 (42.55%), Postives = 153/275 (55.64%), Query Frame = 1


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRK+V  +K K+K+PD K  RKKH  S SK RK SS +R                  
Sbjct: 164 MAMIRKSVVEKKQKEKSPDHKEHRKKHHRSSSKHRKHSSSKR------------------ 223

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDN--R 120
                   HSYSED  SK D  ++    + S Y+   RKT   + H+    ER   +  R
Sbjct: 224 --------HSYSEDDTSKEDKKDKNHHRKRSDYEGHYRKTESDSEHELKETEREEKSHRR 283

Query: 121 DSYTHNEKDSTKVGESRT-REPNASKSP---------------YEPR------HKHRRPA 180
             Y ++++D  K    ++ R+  +S++P               Y+ R      +K R  +
Sbjct: 284 QKYGYDDQDVDKRSHDKSKRDKYSSQAPRSIDADKNQEKDRRSYDHRDTGPRDNKRRGVS 343

Query: 181 TKLSEEGRAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRM 240
            KLSEE RAARLREMQ+DAE HEEQRW+RLKKA E+DA EA  ++    +NFLD A + +
Sbjct: 344 HKLSEEERAARLREMQEDAELHEEQRWKRLKKAEENDAQEATLSSTSVGKNFLDAANRSI 403

Query: 241 YGAEKGGSSTIEESICWRTYYSQGKSEIEANAFRR 252
           YGAEKGGSSTIEES+  R +YSQG+ E E NAFRR
Sbjct: 404 YGAEKGGSSTIEESVRRRAHYSQGRYESEGNAFRR 412

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU62_CUCSA	9.4e-92	78.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025080 PE=4 SV=1	[more]
A0A0D2PL17_GOSRA	4.9e-32	42.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G008200 PE=4 SV=1	[more]
A0A0B0PCG0_GOSAR	1.6e-30	44.44	Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1	[more]
A0A0B0P730_GOSAR	4.6e-30	44.23	Cwf25 OS=Gossypium arboreum GN=F383_08496 PE=4 SV=1	[more]
W9R253_9ROSA	6.0e-30	45.14	Uncharacterized protein OS=Morus notabilis GN=L484_017969 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g05340 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44200.1	1.5e-24	38.19	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing fact...	[more]

BLAST of Cp4.1LG14g05340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107773\|ref\|XP_008453851.1\|	1.0e-94	79.09	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo]	[more]
gi\|449458323\|ref\|XP_004146897.1\|	1.4e-91	78.16	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus]	[more]
gi\|1009111497\|ref\|XP_015901238.1\|	1.5e-34	47.67	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba]	[more]
gi\|1009172647\|ref\|XP_015867386.1\|	1.7e-33	46.90	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ziziphus jujuba]	[more]
gi\|823162973\|ref\|XP_012481416.1\|	7.1e-32	42.55	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05340.1	Cp4.1LG14g05340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 180..200 scor
None	No IPR available	PANTHER	PTHR16196	CELL CYCLE CONTROL PROTEIN CWF25	coord: 11..251 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g05340	Cucsa.094010	Cucumber (Gy14) v1	cgycpeB0187
Cp4.1LG14g05340	CmaCh16G002260	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g05340	CmaCh04G003680	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g05340	CmoCh04G003880	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g05340	CmoCh16G002450	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g05340	Cla010701	Watermelon (97103) v1	cpewmB224
Cp4.1LG14g05340	Csa4G025080	Cucumber (Chinese Long) v2	cpecuB218
Cp4.1LG14g05340	MELO3C017635	Melon (DHL92) v3.5.1	cpemeB202
Cp4.1LG14g05340	ClCG07G017100	Watermelon (Charleston Gray)	cpewcgB211
Cp4.1LG14g05340	CSPI04G04220	Wild cucumber (PI 183967)	cpecpiB220
Cp4.1LG14g05340	Lsi07G001280	Bottle gourd (USVL1VR-Ls)	cpelsiB182
Cp4.1LG14g05340	MELO3C017635.2	Melon (DHL92) v3.6.1	cpemedB244
Cp4.1LG14g05340	CsaV3_4G004310	Cucumber (Chinese Long) v3	cpecucB0262
Cp4.1LG14g05340	Bhi01G001996	Wax gourd	cpewgoB0299
Cp4.1LG14g05340	CsGy4G004150	Cucumber (Gy14) v2	cgybcpeB484
Cp4.1LG14g05340	Carg16767	Silver-seed gourd	carcpeB1215
Cp4.1LG14g05340	Carg08041	Silver-seed gourd	carcpeB0523

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g05340	Cp4.1LG01g03440	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:

None