CmaCh14G016820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G016820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_3
Location	Cma_Chr14 : 12532033 .. 12532648 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGTAAGAAATTCTGCAACCTAAATTAGTTTCGGTATAGGAGAAGAATCGTTCCACGGAACAAATCAGAAGCTAAACTAATGCAACAAAAAATTGAGAGTCGAAATTCAAATAGGATATAGAGAAAATTTTGAGCGTACCTTTCAGTTTTCGCCTTTCAAGGGAAGGAGAAGAAGACGAAGAAGAGGAAGAAGGAGCAGAAGAAAAGTGGTTACATTGGGGAGGTGACGTGGCAAAAGTCAACAGTTCCACGTAGAGAGAGGTTTTGACTCAGCTAGGTCGACGTGTAGTTGTACGCTTGTTCCCTTCCTTCTTAGAAATTTCGACATGTCGTTCAACTCACATTTTTAAGTGCAGTAGGTAAAATCATAGATAAAACGAAATGATCTCGTTCTTTTAGGGACGGCGGCGAAGAGATCCGATGAAGGAAGCGGCGAAGTTGAATGCGGCAAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAGGTTCTTTTCAACATCCCAATTCTGAGCCGTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

mRNA sequence

ATGGCAAATGGACGGCGGCGAAGAGATCCGATGAAGGAAGCGGCGAAGTTGAATGCGGCAAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAGGTTCTTTTCAACATCCCAATTCTGAGCCGTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Coding sequence (CDS)

ATGGCAAATGGACGGCGGCGAAGAGATCCGATGAAGGAAGCGGCGAAGTTGAATGCGGCAAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAGGTTCTTTTCAACATCCCAATTCTGAGCCGTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Protein sequence

MANGRRRRDPMKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPSTIPKDAISNRDD

Homology

[Close]

BLAST of CmaCh14G016820 vs. TrEMBL
Match: A0A0A0L5N1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-20
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPSTIPKDAISNR 70
          MKE AKLNAARSG+VVIGALAFGYLSL LVFKPYLEKAQ S QHP  EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 71 D 72
          D
Sbjct: 61 D 61

[Close]

BLAST of CmaCh14G016820 vs. TrEMBL
Match: W9R337_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-09
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPST 62
          M++  K+NA RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S +H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of CmaCh14G016820 vs. TrEMBL
Match: K7M0W7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-06
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 16  KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPST 62
           K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ       S+PS+
Sbjct: 87  KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 132

[Close]

BLAST of CmaCh14G016820 vs. TrEMBL
Match: A0A0B2RT40_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007284 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-06
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 16 KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPST 62
          K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ       S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of CmaCh14G016820 vs. TrEMBL
Match: A0A0R0GRJ1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G207400 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-06
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 16 KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPST 62
          K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ       S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of CmaCh14G016820 vs. TAIR10
Match: AT5G19151.1 (AT5G19151.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.0e-07
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQ 50
          MK     NA RS VVV+G+LAFGYLSL L +KP+LEKA+
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAE 39

[Close]

BLAST of CmaCh14G016820 vs. NCBI nr
Match: gi|700201880|gb|KGN57013.1| (hypothetical protein Csa_3G149930 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPSTIPKDAISNR 70
          MKE AKLNAARSG+VVIGALAFGYLSL LVFKPYLEKAQ S QHP  EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 71 D 72
          D
Sbjct: 61 D 61

[Close]

BLAST of CmaCh14G016820 vs. NCBI nr
Match: gi|659076498|ref|XP_008438713.1| (PREDICTED: uncharacterized protein LOC103483737 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-16
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPSTIPKDAISNR 70
          MKE AKLNAARSG+VVIGALAFGYLSL + FKPYLEKAQ   QHP  EPSTI KDA+SN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQTYLQHPEPEPSTILKDAVSNP 60

Query: 71 D 72
          D
Sbjct: 61 D 61

[Close]

BLAST of CmaCh14G016820 vs. NCBI nr
Match: gi|703090156|ref|XP_010094003.1| (hypothetical protein L484_007349 [Morus notabilis])

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-09
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPST 62
          M++  K+NA RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S +H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of CmaCh14G016820 vs. NCBI nr
Match: gi|734415169|gb|KHN37581.1| (hypothetical protein glysoja_007284 [Glycine soja])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 16 KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQGSFQHPNSEPST 62
          K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ       S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of CmaCh14G016820 vs. NCBI nr
Match: gi|661897293|emb|CDO99005.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQ 50
          M+  AK+NA RSGVVV+GALAFGYL+L L FKP+LEKAQ
Sbjct: 1  MRGTAKMNAMRSGVVVLGALAFGYLTLQLGFKPFLEKAQ 39

The following BLAST results are available for this feature:

BLAST of CmaCh14G016820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G016820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5N1_CUCSA	7.8e-20	86.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149930 PE=4 SV=1	[more]
W9R337_9ROSA	2.8e-09	62.75	Uncharacterized protein OS=Morus notabilis GN=L484_007349 PE=4 SV=1	[more]
K7M0W7_SOYBN	1.7e-06	63.04	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2RT40_GLYSO	1.7e-06	63.04	Uncharacterized protein OS=Glycine soja GN=glysoja_007284 PE=4 SV=1	[more]
A0A0R0GRJ1_SOYBN	1.7e-06	63.04	Uncharacterized protein OS=Glycine max GN=GLYMA_13G207400 PE=4 SV=1	[more]

BLAST of CmaCh14G016820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19151.1	4.0e-07	64.10	unknown protein	[more]

BLAST of CmaCh14G016820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201880\|gb\|KGN57013.1\|	1.1e-19	86.89	hypothetical protein Csa_3G149930 [Cucumis sativus]	[more]
gi\|659076498\|ref\|XP_008438713.1\|	2.6e-16	78.69	PREDICTED: uncharacterized protein LOC103483737 [Cucumis melo]	[more]
gi\|703090156\|ref\|XP_010094003.1\|	4.0e-09	62.75	hypothetical protein L484_007349 [Morus notabilis]	[more]
gi\|734415169\|gb\|KHN37581.1\|	2.4e-06	63.04	hypothetical protein glysoja_007284 [Glycine soja]	[more]
gi\|661897293\|emb\|CDO99005.1\|	2.4e-06	74.36	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G016820.1	CmaCh14G016820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 5..49 score: 6.8
None	No IPR available	PANTHER	PTHR33982:SF2	SUBFAMILY NOT NAMED	coord: 5..49 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G016820	Cla021655	Watermelon (97103) v1	cmawmB242
CmaCh14G016820	Csa3G149930	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G016820	MELO3C006556	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G016820	ClCG05G005370	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G016820	CSPI03G13410	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G016820	CmoCh14G017280	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G016820	Lsi05G014480	Bottle gourd (USVL1VR-Ls)	cmalsiB250
CmaCh14G016820	MELO3C006556.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G016820	CsaV3_3G013620	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G016820	Cla97C05G086690	Watermelon (97103) v2	cmawmbB263
CmaCh14G016820	Bhi01G000622	Wax gourd	cmawgoB0328
CmaCh14G016820	Carg23816	Silver-seed gourd	carcmaB0307

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G016820	Melon (DHL92) v3.5.1	cmameB215
CmaCh14G016820	Watermelon (Charleston Gray)	cmawcgB215
CmaCh14G016820	Watermelon (Charleston Gray)	cmawcgB236
CmaCh14G016820	Watermelon (97103) v1	cmawmB250
CmaCh14G016820	Cucurbita pepo (Zucchini)	cmacpeB262
CmaCh14G016820	Cucurbita pepo (Zucchini)	cmacpeB268
CmaCh14G016820	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G016820	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G016820	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G016820	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G016820	Melon (DHL92) v3.6.1	cmamedB242
CmaCh14G016820	Silver-seed gourd	carcmaB0090
CmaCh14G016820	Silver-seed gourd	carcmaB0453
CmaCh14G016820	Silver-seed gourd	carcmaB0847
CmaCh14G016820	Watermelon (97103) v2	cmawmbB266
CmaCh14G016820	Watermelon (97103) v2	cmawmbB280
CmaCh14G016820	Wax gourd	cmawgoB0306
CmaCh14G016820	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G016820	Cucurbita maxima (Rimu)	cmacmaB284
CmaCh14G016820	Cucurbita maxima (Rimu)	cmacmaB298
CmaCh14G016820	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G016820	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G016820	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G016820	Cucurbita moschata (Rifu)	cmacmoB279