Carg23816 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23816
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	outer envelope membrane protein 7-like
Location	Cucurbita_argyrosperma_scaffold_324 : 181994 .. 182622 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGTAAGAAATTCTGCAACCTAAACTAGTTTCGGTATAGGAGAAGAATCGTTCCACGGAACAAATCAGAAGCTAAACTAATGCAACAAAAAATTGAGAGTCGAAATTCAAATAGGATATAGAGAAAATTTTGAGCGTACCTTTCAGTTTTCGCCTTTCAAGGGAAGAAGAAGAAGAAGAAGAAGAAGACGAGGAAGAGGAAGAAGGAGCAGAAGAAAAGTGATTACATTAGGGAGGTGACGTGGCAAAAGTCAACAGTTCCACGTAGAGAGAGGTTTTGACTCAGCTAGGTCGACGTGTAGTTGTACGCTTGTTCCGTTCCTTCTTAGAAATTTCGACATGTCGTTCAACTCACATTTTTAAGTACAGTAAGGTAAAATCATAGATAAAACGAAATGATCTCGTTCGTTTAGGGACGGCGGCGAAGAGAACCGATGAAGGAAGCAGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

mRNA sequence

ATGGCAAATAAGAAGAAGAAGAAGAAGAAGACGAGGAAGAGGAAGAAGGAGCAGAAGAAAAGTGATTACATTAGGGAGGGACGGCGGCGAAGAGAACCGATGAAGGAAGCAGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Coding sequence (CDS)

ATGGCAAATAAGAAGAAGAAGAAGAAGAAGACGAGGAAGAGGAAGAAGGAGCAGAAGAAAAGTGATTACATTAGGGAGGGACGGCGGCGAAGAGAACCGATGAAGGAAGCAGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACACCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Protein sequence

MANKKKKKKKTRKRKKEQKKSDYIREGRRRREPMKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNRDD

Homology

[Close]

BLAST of Carg23816 vs. NCBI nr
Match: KGN57013.1 (hypothetical protein Csa_3G149930 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 5.8e-20
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNR 93
          MKE AKLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQSSLQHP+ EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 94 D 95
          D
Sbjct: 61 D 61

[Close]

BLAST of Carg23816 vs. NCBI nr
Match: EXB55018.1 (hypothetical protein L484_007349 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 32/51 (62.75%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 85
          M++  K+NA+RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of Carg23816 vs. NCBI nr
Match: PKI77164.1 (hypothetical protein CRG98_002446 [Punica granatum])

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHP-DSEPS 84
          M + AK+NA+RSG+VV+GALAFGYLS  L FKPYLE+A+++L+    S+PS
Sbjct: 1  MNQTAKMNAIRSGIVVVGALAFGYLSFRLGFKPYLERAEAALESAGPSQPS 51

[Close]

BLAST of Carg23816 vs. NCBI nr
Match: PON80154.1 (hypothetical protein PanWU01x14_006040 [Parasponia andersonii])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 85
          M    K+NA+RSGVVV+GALAFGYL+L L FKP+LEKAQ +L H +   S+
Sbjct: 1  MDHRTKMNAMRSGVVVVGALAFGYLTLQLGFKPFLEKAQVNLDHSEKPTSS 51

[Close]

BLAST of Carg23816 vs. NCBI nr
Match: KHN37581.1 (hypothetical protein glysoja_007284 [Glycine soja] >KRH20890.1 hypothetical protein GLYMA_13G207400 [Glycine max])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 39 KLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 85
          K+NA+RSG+VV+GALAFGYLS+ + FKPYLEKAQ+     +S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of Carg23816 vs. TAIR10
Match: AT5G19151.1 (unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQ 73
          MK     NA+RS VVV+G+LAFGYLSL L +KP+LEKA+
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAE 39

[Close]

BLAST of Carg23816 vs. TAIR10
Match: AT3G63160.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 44 RSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIP 87
          ++  VV+G LA G+L++ LVFKP  +K  SS    DS+ +T+P
Sbjct: 22 QTATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSDSDDATVP 64

[Close]

BLAST of Carg23816 vs. TrEMBL
Match: tr|A0A0A0L5N1|A0A0A0L5N1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-20
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNR 93
          MKE AKLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQSSLQHP+ EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 94 D 95
          D
Sbjct: 61 D 61

[Close]

BLAST of Carg23816 vs. TrEMBL
Match: tr|W9R337|W9R337_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 32/51 (62.75%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 85
          M++  K+NA+RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of Carg23816 vs. TrEMBL
Match: tr|A0A2I0L8Y5|A0A2I0L8Y5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_002446 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHP-DSEPS 84
          M + AK+NA+RSG+VV+GALAFGYLS  L FKPYLE+A+++L+    S+PS
Sbjct: 1  MNQTAKMNAIRSGIVVVGALAFGYLSFRLGFKPYLERAEAALESAGPSQPS 51

[Close]

BLAST of Carg23816 vs. TrEMBL
Match: tr|A0A2P5E3N7|A0A2P5E3N7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_006040 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 85
          M    K+NA+RSGVVV+GALAFGYL+L L FKP+LEKAQ +L H +   S+
Sbjct: 1  MDHRTKMNAMRSGVVVVGALAFGYLTLQLGFKPFLEKAQVNLDHSEKPTSS 51

[Close]

BLAST of Carg23816 vs. TrEMBL
Match: tr|A0A0R0GRJ1|A0A0R0GRJ1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G207400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.3e-07
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 39 KLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 85
          K+NA+RSG+VV+GALAFGYLS+ + FKPYLEKAQ+     +S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

The following BLAST results are available for this feature:

BLAST of Carg23816 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57013.1	5.8e-20	88.52	hypothetical protein Csa_3G149930 [Cucumis sativus]	[more]
EXB55018.1	2.1e-09	62.75	hypothetical protein L484_007349 [Morus notabilis]	[more]
PKI77164.1	2.5e-07	60.78	hypothetical protein CRG98_002446 [Punica granatum]	[more]
PON80154.1	3.3e-07	60.78	hypothetical protein PanWU01x14_006040 [Parasponia andersonii]	[more]
KHN37581.1	1.3e-06	63.04	hypothetical protein glysoja_007284 [Glycine soja] >KRH20890.1 hypothetical prot...	[more]

BLAST of Carg23816 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19151.1	1.4e-07	64.10	unknown protein	[more]
AT3G63160.1	1.9e-04	44.19	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg23816 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23816 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5N1\|A0A0A0L5N1_CUCSA	3.9e-20	88.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1	[more]
tr\|W9R337\|W9R337_9ROSA	1.4e-09	62.75	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1	[more]
tr\|A0A2I0L8Y5\|A0A2I0L8Y5_PUNGR	1.7e-07	60.78	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_002446 PE=4 SV=1	[more]
tr\|A0A2P5E3N7\|A0A2P5E3N7_PARAD	2.2e-07	60.78	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_006040 PE...	[more]
tr\|A0A0R0GRJ1\|A0A0R0GRJ1_SOYBN	8.3e-07	63.04	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G207400 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038944	OEP7-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23816-RA	Carg23816-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..95
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR33982:SF2	SUBFAMILY NOT NAMED	coord: 11..83
IPR038944	Outer envelope membrane protein 7-like	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 11..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23816	Cla021655	Watermelon (97103) v1	carwmB0211
Carg23816	Csa3G149930	Cucumber (Chinese Long) v2	carcuB0250
Carg23816	MELO3C006556	Melon (DHL92) v3.5.1	carmeB0228
Carg23816	CSPI03G13410	Wild cucumber (PI 183967)	carcpiB0255
Carg23816	CmaCh14G016820	Cucurbita maxima (Rimu)	carcmaB0307
Carg23816	CmoCh14G017280	Cucurbita moschata (Rifu)	carcmoB0311
Carg23816	Lsi05G014480	Bottle gourd (USVL1VR-Ls)	carlsiB200
Carg23816	MELO3C006556.2	Melon (DHL92) v3.6.1	carmedB0235
Carg23816	Cla97C05G086690	Watermelon (97103) v2	carwmbB0225
Carg23816	Bhi01G000622	Wax gourd	carwgoB0277

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23816	Wax gourd	carwgoB0276
Carg23816	Silver-seed gourd	carcarB078
Carg23816	Silver-seed gourd	carcarB257
Carg23816	Silver-seed gourd	carcarB258
Carg23816	Cucumber (Gy14) v2	carcgybB0239
Carg23816	Cucumber (Gy14) v1	carcgyB0265
Carg23816	Cucurbita maxima (Rimu)	carcmaB0308
Carg23816	Cucurbita maxima (Rimu)	carcmaB0309
Carg23816	Cucurbita maxima (Rimu)	carcmaB0310
Carg23816	Cucurbita moschata (Rifu)	carcmoB0312
Carg23816	Cucurbita moschata (Rifu)	carcmoB0313
Carg23816	Cucurbita moschata (Rifu)	carcmoB0314
Carg23816	Cucurbita pepo (Zucchini)	carcpeB0315
Carg23816	Cucurbita pepo (Zucchini)	carcpeB0316
Carg23816	Cucurbita pepo (Zucchini)	carcpeB0317
Carg23816	Cucurbita pepo (Zucchini)	carcpeB0318
Carg23816	Cucumber (Chinese Long) v3	carcucB0254
Carg23816	Bottle gourd (USVL1VR-Ls)	carlsiB198
Carg23816	Melon (DHL92) v3.5.1	carmeB0227
Carg23816	Melon (DHL92) v3.6.1	carmedB0234
Carg23816	Watermelon (Charleston Gray)	carwcgB0216
Carg23816	Watermelon (Charleston Gray)	carwcgB0217
Carg23816	Watermelon (97103) v1	carwmB0212
Carg23816	Watermelon (97103) v2	carwmbB0226