CmoCh14G017280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G017280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	outer envelope membrane protein 7
Location	Cmo_Chr14 : 13497033 .. 13497646 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGTAAGAAATTCTGCAACCTAAACTAGTTTCGGTATAGGAGAAGAATCGTTCCACGGAACAAATCAGAAGCTAAACTAATGCAACAAAAAATTGAGAGTCGAAATTCAAATAGGATATAGAGAAAATTTTGAGCGTACCTTTCAGTTTTCGCCTTTCAAGGGAAGGAGGAGAAGACGAAGAAGAGGAAGAAGGAGCAGAAGAAATGATTACATTAGGGAGGTGACGTGGCAAAAGTCAACAGTTCCACGTAGAGAGAGGTTTTGACTCAGCTAGGTCGACGTGTAGTTGTACGCTTGTTCCGTTCCTTCTTAGAAATTTCGACATGTCGTTCAACTCACATTTTTAAGTACAGTAGGTAAAATCATAGATAAAACCAAATGATCTCGTTCTTTTAGGGACGGCGGCGAAGAGATCCGATGAAGGAAGCGGCGAAGTTGAATGCGGCAAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACATCTTGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

mRNA sequence

ATGGCAAATGGACGGCGGCGAAGAGATCCGATGAAGGAAGCGGCGAAGTTGAATGCGGCAAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACATCTTGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Coding sequence (CDS)

ATGGCAAATGGACGGCGGCGAAGAGATCCGATGAAGGAAGCGGCGAAGTTGAATGCGGCAAGGTCCGGCGTGGTGGTGATCGGAGCTCTGGCCTTCGGGTATCTGAGCCTACATCTTGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGATGCTATTTCAAACCGCGATGATTGA

Homology

[Close]

BLAST of CmoCh14G017280 vs. TrEMBL
Match: A0A0A0L5N1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.3e-21
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNR 70
          MKE AKLNAARSG+VVIGALAFGYLSL LVFKPYLEKAQSSLQHP+ EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 71 D 72
          D
Sbjct: 61 D 61

[Close]

BLAST of CmoCh14G017280 vs. TrEMBL
Match: W9R337_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 62
          M++  K+NA RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of CmoCh14G017280 vs. TrEMBL
Match: A0A0B2RT40_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007284 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-07
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 16 KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 62
          K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ+     +S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of CmoCh14G017280 vs. TrEMBL
Match: A0A0R0GRJ1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G207400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-07
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 16 KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 62
          K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ+     +S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of CmoCh14G017280 vs. TrEMBL
Match: K7M0W7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-07
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 16  KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 62
           K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ+     +S+PS+
Sbjct: 87  KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 132

[Close]

BLAST of CmoCh14G017280 vs. TAIR10
Match: AT5G19151.1 (AT5G19151.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.8e-07
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKA-------QSSLQHPDSE 59
          MK     NA RS VVV+G+LAFGYLSL L +KP+LEKA       QSS QH   +
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAEQYERSLQSSQQHQQQD 55

[Close]

BLAST of CmoCh14G017280 vs. NCBI nr
Match: gi|700201880|gb|KGN57013.1| (hypothetical protein Csa_3G149930 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNR 70
          MKE AKLNAARSG+VVIGALAFGYLSL LVFKPYLEKAQSSLQHP+ EPSTIPKDAISN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 71 D 72
          D
Sbjct: 61 D 61

[Close]

BLAST of CmoCh14G017280 vs. NCBI nr
Match: gi|659076498|ref|XP_008438713.1| (PREDICTED: uncharacterized protein LOC103483737 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-17
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNR 70
          MKE AKLNAARSG+VVIGALAFGYLSL + FKPYLEKAQ+ LQHP+ EPSTI KDA+SN 
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQTYLQHPEPEPSTILKDAVSNP 60

Query: 71 D 72
          D
Sbjct: 61 D 61

[Close]

BLAST of CmoCh14G017280 vs. NCBI nr
Match: gi|703090156|ref|XP_010094003.1| (hypothetical protein L484_007349 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-09
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 62
          M++  K+NA RSGVVV+GA+AFGYL+L+L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of CmoCh14G017280 vs. NCBI nr
Match: gi|734415169|gb|KHN37581.1| (hypothetical protein glysoja_007284 [Glycine soja])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 16 KLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPST 62
          K+NA RSG+VV+GALAFGYLS+ + FKPYLEKAQ+     +S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of CmoCh14G017280 vs. NCBI nr
Match: gi|661897293|emb|CDO99005.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 11 MKEAAKLNAARSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQ 54
          M+  AK+NA RSGVVV+GALAFGYL+L L FKP+LEKAQ   Q
Sbjct: 1  MRGTAKMNAMRSGVVVLGALAFGYLTLQLGFKPFLEKAQKRQQ 43

The following BLAST results are available for this feature:

BLAST of CmoCh14G017280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G017280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5N1_CUCSA	9.3e-21	90.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149930 PE=4 SV=1	[more]
W9R337_9ROSA	1.6e-09	62.75	Uncharacterized protein OS=Morus notabilis GN=L484_007349 PE=4 SV=1	[more]
A0A0B2RT40_GLYSO	9.9e-07	63.04	Uncharacterized protein OS=Glycine soja GN=glysoja_007284 PE=4 SV=1	[more]
A0A0R0GRJ1_SOYBN	9.9e-07	63.04	Uncharacterized protein OS=Glycine max GN=GLYMA_13G207400 PE=4 SV=1	[more]
K7M0W7_SOYBN	9.9e-07	63.04	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmoCh14G017280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19151.1	1.8e-07	54.55	unknown protein	[more]

BLAST of CmoCh14G017280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201880\|gb\|KGN57013.1\|	1.3e-20	90.16	hypothetical protein Csa_3G149930 [Cucumis sativus]	[more]
gi\|659076498\|ref\|XP_008438713.1\|	4.0e-17	80.33	PREDICTED: uncharacterized protein LOC103483737 [Cucumis melo]	[more]
gi\|703090156\|ref\|XP_010094003.1\|	2.4e-09	62.75	hypothetical protein L484_007349 [Morus notabilis]	[more]
gi\|734415169\|gb\|KHN37581.1\|	1.4e-06	63.04	hypothetical protein glysoja_007284 [Glycine soja]	[more]
gi\|661897293\|emb\|CDO99005.1\|	1.4e-06	69.77	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G017280.1	CmoCh14G017280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 5..71 score: 1.5
None	No IPR available	PANTHER	PTHR33982:SF2	SUBFAMILY NOT NAMED	coord: 5..71 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G017280	CmaCh14G016820	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G017280	Cla021655	Watermelon (97103) v1	cmowmB231
CmoCh14G017280	Csa3G149930	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G017280	MELO3C006556	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G017280	CSPI03G13410	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G017280	Lsi05G014480	Bottle gourd (USVL1VR-Ls)	cmolsiB238
CmoCh14G017280	MELO3C006556.2	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G017280	Cla97C05G086690	Watermelon (97103) v2	cmowmbB243
CmoCh14G017280	Bhi01G000622	Wax gourd	cmowgoB0317
CmoCh14G017280	Carg23816	Silver-seed gourd	carcmoB0311

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G017280	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G017280	Melon (DHL92) v3.6.1	cmomedB225
CmoCh14G017280	Silver-seed gourd	carcmoB0096
CmoCh14G017280	Silver-seed gourd	carcmoB0444
CmoCh14G017280	Silver-seed gourd	carcmoB0823
CmoCh14G017280	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G017280	Watermelon (97103) v2	cmowmbB246
CmoCh14G017280	Watermelon (97103) v2	cmowmbB263
CmoCh14G017280	Wax gourd	cmowgoB0295
CmoCh14G017280	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh14G017280	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh14G017280	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh14G017280	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G017280	Cucurbita maxima (Rimu)	cmacmoB350
CmoCh14G017280	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G017280	Cucurbita maxima (Rimu)	cmacmoB883
CmoCh14G017280	Melon (DHL92) v3.5.1	cmomeB200
CmoCh14G017280	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G017280	Watermelon (Charleston Gray)	cmowcgB222
CmoCh14G017280	Watermelon (97103) v1	cmowmB239
CmoCh14G017280	Cucurbita pepo (Zucchini)	cmocpeB225
CmoCh14G017280	Cucurbita pepo (Zucchini)	cmocpeB230
CmoCh14G017280	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G017280	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G017280	Bottle gourd (USVL1VR-Ls)	cmolsiB213