ClCG05G005370 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G005370
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 5228457 .. 5230114 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGAATTCCACGAGGAAGTGTGATGTGGCAAAAGTCAACAATTCCACGTGGAGAGGGCTTTTGACTCAGCTAGGTCGACATGTAGTCGTACGCTTGTTCCGTCGTTGTAGAAATATCGACATGTCGTTTAACTCACACTTTTAAGTACAGTGGAGTGAAATCATAGACACAACGAAATTGTCTCGGTTTTTTAGGGACGGCGGCGAAGAGAACCGATGAAGGAAACGGCGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGCTCACAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGCTCTCTTCAACATCCCGATTCCGAACCCTCTGCAATTCCAAAAGACGCCATTTCAAACCGCGATGATTAAGCTTATTCTTCGTATTTTGACTCGGTATGTATAAATTTAGCTTAGAGATTACCCGGAAATTTCTCAGTTTCAAGAGATTTTGAGAAACAGGAGAAGGATTCATTGATTTCACTATTCTGTTTTCCTACTGCTTCATGATGTTCAGATTAATGGTTCATCAGATGATGATATTGGATTTATTCTCCATGGTAGTTACTAGTTTGAAAGAAATTTGAGCTTTCTTCTTGGAAGGATTCTTATCTGGAATGACTTGCCACCAACAATAGTTTCTGATTTGTCTGTGTCTCAACCACAGTTGAGTTTATATATATATATATCATGGATTGGTATCTTATTGAATATAATTGGTGACATTTGCTTCAATCGCCCTTGTACAGAAAAGGCTTTACATACGAGGAATTACAAATAAAAGAGAAAATTGCAGTAAATATTTAGAAAAAGGAAAGCTCAAAACAATTAGGTTGACCGTATGTTTCTCATTCCTTTTAAGGAGAATCGAGTTGTCTGTGGTGTGTATTGTAATTGTTTGTATCAACTACCGGTACGGGCATATATTCTCTACTTGTCCTCTCCATAATACATCAACTCTTGCATTCCCTTTCTTTCTCAAACCTCTGAGTTCGAAAAGGATCCTTGATGAGTTCATAAGATTCATCAAATCAAATGTGATTGAGTTGCAAAAACTTCTAGGTTTTTCATTCCTCCCTTGTACGCACTTAGAATGTTGGAATACATCTGAGATCCCGATTTTGAAATGTGGGTGTTTAGAGATCGTGGTATTGAGTTTTGTTAGTCAAAGCACTGATATTTACTTTGTGTAGTCTGGTAGTTAGTAATATGCTGGCTGTCATTCTTTCATTGGTTAGCCCTTCTGTATATATACTCAAGGGTTGTATTTGTTAATTAAGATGATTAATAATATCATCGTATTTTTACCCATTTACATGTCTTATGGTATTATAGTGGTTACTCATCTTCTTTCGCTTTGTTTGCTGAGATCTGATTTCTTCGTGATCTCTTTGCAGTGGTTTCTTCATATTATGCCAGCTGTCATTCCTTCATTGGTTAGCTCTTTTGAATATATACTCGAGGGCTGTATTTGCTAATGAAGATGATTGAGTATTTTTACCCATTTACATATGTTACATGGGAATGGTACCACTTCCAAGTGTACCAAAGTTGGTCGTCTTGGGGCGGTGTGACTGGGGGAAAAGCACCTATCAGGTTGAAACCAGGTACCCTGTTTAC

mRNA sequence

ATGATGATGAATTCCACGAGGAAGTGTGATGTGGCAAAAGTCAACAATTCCACGTGGAGAGGGCTTTTGACTCAGCTAGGTCGACATGTAGTCGGACGGCGGCGAAGAGAACCGATGAAGGAAACGGCGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGCTCACAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGCTCTCTTCAACATCCCGATTCCGAACCCTCTGCAATTCCAAAAGACGCCATTTCAAACCGCGATGATTAAGCTTATTCTTCGTATTTTGACTCGTGGTTTCTTCATATTATGCCAGCTGTCATTCCTTCATTGGTTAGCTCTTTTGAATATATACTCGAGGGCTGTATTTGCTAATGAAGATGATTGAGTATTTTTACCCATTTACATATGTTACATGGGAATGGTACCACTTCCAAGTGTACCAAAGTTGGTCGTCTTGGGGCGGTGTGACTGGGGGAAAAGCACCTATCAGGTTGAAACCAGGTACCCTGTTTAC

Coding sequence (CDS)

ATGATGATGAATTCCACGAGGAAGTGTGATGTGGCAAAAGTCAACAATTCCACGTGGAGAGGGCTTTTGACTCAGCTAGGTCGACATGTAGTCGGACGGCGGCGAAGAGAACCGATGAAGGAAACGGCGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGCTCACAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGCTCTCTTCAACATCCCGATTCCGAACCCTCTGCAATTCCAAAAGACGCCATTTCAAACCGCGATGATTAA

Protein sequence

MMMNSTRKCDVAKVNNSTWRGLLTQLGRHVVGRRRREPMKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSAIPKDAISNRDD

Homology

[Close]

BLAST of ClCG05G005370 vs. TrEMBL
Match: A0A0A0L5N1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 39  MKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSAIPKDAISNR 98
           MKETAKLNAARSGLVVIGALAFGYLS QLVFKPYLEKAQSSLQHP+ EPS IPKDAISN 
Sbjct: 1   MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 99  D 100
           D
Sbjct: 61  D 61

[Close]

BLAST of ClCG05G005370 vs. TrEMBL
Match: W9R337_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 39 MKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSA 90
          M++  K+NA RSG+VV+GA+AFGYL+  L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of ClCG05G005370 vs. TrEMBL
Match: A0A0B2RT40_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007284 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 44 KLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSA 90
          K+NA RSG+VV+GALAFGYLS Q+ FKPYLEKAQ+     +S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of ClCG05G005370 vs. TrEMBL
Match: A0A0R0GRJ1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G207400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 44 KLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSA 90
          K+NA RSG+VV+GALAFGYLS Q+ FKPYLEKAQ+     +S+PS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

[Close]

BLAST of ClCG05G005370 vs. TrEMBL
Match: K7M0W7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 44  KLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSA 90
           K+NA RSG+VV+GALAFGYLS Q+ FKPYLEKAQ+     +S+PS+
Sbjct: 87  KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 132

[Close]

BLAST of ClCG05G005370 vs. TAIR10
Match: AT5G19151.1 (AT5G19151.1 unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 39 MKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKA-------QSSLQHPDSE 87
          MK T   NA RS +VV+G+LAFGYLS +L +KP+LEKA       QSS QH   +
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAEQYERSLQSSQQHQQQD 55

[Close]

BLAST of ClCG05G005370 vs. NCBI nr
Match: gi|700201880|gb|KGN57013.1| (hypothetical protein Csa_3G149930 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 39  MKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSAIPKDAISNR 98
           MKETAKLNAARSGLVVIGALAFGYLS QLVFKPYLEKAQSSLQHP+ EPS IPKDAISN 
Sbjct: 1   MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 99  D 100
           D
Sbjct: 61  D 61

[Close]

BLAST of ClCG05G005370 vs. NCBI nr
Match: gi|659076498|ref|XP_008438713.1| (PREDICTED: uncharacterized protein LOC103483737 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-18
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 39  MKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSAIPKDAISNR 98
           MKETAKLNAARSGLVVIGALAFGYLS Q+ FKPYLEKAQ+ LQHP+ EPS I KDA+SN 
Sbjct: 1   MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQTYLQHPEPEPSTILKDAVSNP 60

Query: 99  D 100
           D
Sbjct: 61  D 61

[Close]

BLAST of ClCG05G005370 vs. NCBI nr
Match: gi|703090156|ref|XP_010094003.1| (hypothetical protein L484_007349 [Morus notabilis])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 39 MKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQHPDSEPSA 90
          M++  K+NA RSG+VV+GA+AFGYL+  L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of ClCG05G005370 vs. NCBI nr
Match: gi|702444923|ref|XP_010024393.1| (PREDICTED: uncharacterized protein LOC104414879 [Eucalyptus grandis])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 39  MKETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQ----SSLQHPDSEPSAIPKDA 98
           M +  K+NA RSGLVVIGALAFGYL+ QL FKP+LEKAQ    ++    D+ PS+ P+D 
Sbjct: 1   MWDRTKMNAMRSGLVVIGALAFGYLTLQLGFKPFLEKAQVAAAAAAADADASPSS-PQDP 60

Query: 99  ISNRDD 101
            + RD+
Sbjct: 61  AALRDE 65

[Close]

BLAST of ClCG05G005370 vs. NCBI nr
Match: gi|922388456|ref|XP_013462758.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 62.0 bits (149), Expect = 6.8e-07
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 40 KETAKLNAARSGLVVIGALAFGYLSSQLVFKPYLEKAQSSLQH----------PDSEPSA 97
          K   K+NA RSG+VV+GALAFGYLS ++ FKPYLEKAQ   Q            DS+PS+
Sbjct: 6  KSDMKMNAIRSGIVVLGALAFGYLSFRIGFKPYLEKAQVQQQQQQNEVQECRDSDSDPSS 65

The following BLAST results are available for this feature:

BLAST of ClCG05G005370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5N1_CUCSA	1.2e-21	91.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149930 PE=4 SV=1	[more]
W9R337_9ROSA	1.5e-08	58.82	Uncharacterized protein OS=Morus notabilis GN=L484_007349 PE=4 SV=1	[more]
A0A0B2RT40_GLYSO	4.7e-07	65.22	Uncharacterized protein OS=Glycine soja GN=glysoja_007284 PE=4 SV=1	[more]
A0A0R0GRJ1_SOYBN	4.7e-07	65.22	Uncharacterized protein OS=Glycine max GN=GLYMA_13G207400 PE=4 SV=1	[more]
K7M0W7_SOYBN	4.7e-07	65.22	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of ClCG05G005370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19151.1	1.5e-07	52.73	unknown protein	[more]

BLAST of ClCG05G005370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201880\|gb\|KGN57013.1\|	1.7e-21	91.80	hypothetical protein Csa_3G149930 [Cucumis sativus]	[more]
gi\|659076498\|ref\|XP_008438713.1\|	5.0e-18	81.97	PREDICTED: uncharacterized protein LOC103483737 [Cucumis melo]	[more]
gi\|703090156\|ref\|XP_010094003.1\|	2.1e-08	58.82	hypothetical protein L484_007349 [Morus notabilis]	[more]
gi\|702444923\|ref\|XP_010024393.1\|	2.3e-07	54.55	PREDICTED: uncharacterized protein LOC104414879 [Eucalyptus grandis]	[more]
gi\|922388456\|ref\|XP_013462758.1\|	6.8e-07	52.24	transmembrane protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G005370.1	ClCG05G005370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 33..99 score: 4.3
None	No IPR available	PANTHER	PTHR33982:SF2	SUBFAMILY NOT NAMED	coord: 33..99 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G005370	Cla021655	Watermelon (97103) v1	wcgwmB286
ClCG05G005370	Cla97C05G086690	Watermelon (97103) v2	wcgwmbB229
ClCG05G005370	Bhi01G000622	Wax gourd	wcgwgoB426
ClCG05G005370	CmaCh14G016820	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G005370	CsaV3_3G013620	Cucumber (Chinese Long) v3	cucwcgB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G005370	Wax gourd	wcgwgoB415
ClCG05G005370	Watermelon (Charleston Gray)	wcgwcgB024
ClCG05G005370	Watermelon (Charleston Gray)	wcgwcgB160
ClCG05G005370	Cucumber (Gy14) v1	cgywcgB451
ClCG05G005370	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G005370	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G005370	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G005370	Cucurbita moschata (Rifu)	cmowcgB792
ClCG05G005370	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G005370	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G005370	Melon (DHL92) v3.5.1	mewcgB121
ClCG05G005370	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G005370	Watermelon (97103) v1	wcgwmB271
ClCG05G005370	Watermelon (97103) v1	wcgwmB311
ClCG05G005370	Cucurbita pepo (Zucchini)	cpewcgB293
ClCG05G005370	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G005370	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G005370	Bottle gourd (USVL1VR-Ls)	lsiwcgB017
ClCG05G005370	Bottle gourd (USVL1VR-Ls)	lsiwcgB195
ClCG05G005370	Bottle gourd (USVL1VR-Ls)	lsiwcgB333
ClCG05G005370	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G005370	Melon (DHL92) v3.6.1	medwcgB115
ClCG05G005370	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G005370	Silver-seed gourd	carwcgB0072
ClCG05G005370	Silver-seed gourd	carwcgB0216
ClCG05G005370	Silver-seed gourd	carwcgB0317
ClCG05G005370	Silver-seed gourd	carwcgB0588
ClCG05G005370	Watermelon (97103) v2	wcgwmbB238
ClCG05G005370	Watermelon (97103) v2	wcgwmbB253