CmaCh12G011520 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G011520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Reticulon-like protein
Location	Cma_Chr12 : 9079103 .. 9084016 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAACAGAGAATTCCCTGTTCTTCTGTTCAAACCTTGGAGTTCGTAGGACGCCATTTTTACACCTTGGGATTGGTTTACAGAGGGTTTTTGCTGTGCGTTCGTAGGCGGCGGCGATGGATTTGAGCCGGCGGAGGGCGGCGGTGGCAAGGGGCAACGTGGTGGCGGGGTCTGTCTGGGAAAGCAGAATCCGATTCGATGAAGTCCGTGGTGGGATTAGGGTTTTCAATGGAGACGATGAAACCGCCGAATGTAGGGTTCCGGCCGCTACCGTCGGCAGTGCAAGGAGGAAGACATGGAAATCCGATGAGAGTTTTAACTCGATTCAAATCGCCGAGGAAAAACCAGAATCACCGAGTAGCGGCGATGAACCGAATCGGAAAACCCCGATTCCGTCTCGGAGATTGAGATCCAACAACAGTCCAAACAAACCGGTACGAATAACAGAGAGAAACTCGACGAGGAAGAAAACCGATCAACCTCGAAAATCGGCCGTCGGGATTACCAAACCGCCGATGAACACGAACGGAATCAGAAAAATCTCCCCGGAGAAGACGGTTTCATCTCCTCCACCTCAAGATTTCTTCGATGCATTCGAAGAGATTAAGAACGAAAGCTTCGACGTTAAGGAAATCAATTTTCCAGGACAAGAAATTTTCCCGGGAAACAAACAGAAATTACAGAGACTAAGTGAGAACAGAGCCTCCCACTTTCATTACAGAATCTCAAAATTTAATTTCCTTAACTGTTTGGTTTCTTGCAGTGGATTTGATAATGTGGAGGGAGTTTTCAAGATCCGCCATGGCATTTGGAGCGGGGAATTTGGTTATAGCCCTCTCTTATTTCATCAAGAACATGAACATCAGGTAATAAAAAAAAAAACCCCAAATCCGCCATTGAAGAAAGGTTTTTGAGTTTTGTTTTGTTTCTGGAATTTGCAGCTTTATCAGTATGATTTCGCATATGGGTCTTGTTTATCTGGCTGCCATTTTCGTCCATAGCTCCATTTTTAGCAGGTGCTCGATCAATTTCGTCCTGTTTTGTTTAGGTTAAGCTCTGGTTTTGCATTTAATTTTCCCGGGAAAATTACAGGGGAAATGGAAAGGGAATCGATAGTGATGATGAACATTGTGTGGTTGAAGAAGAAGTGATTCGATTGGTTAAAGGGTTTGTTCCTTTCGTGAATGAATTGCTGCAAAATCTCAAGCCTCTGTTCCATGGAGATCCTTCTGCAACTATGAAGGTAATTTTCTTTTCTTTTCTTTTTTTAAATTAAAAAATATATATACCCTTAAATTTTCTATTTTCTTTACTCAATAATACGTTTTTTCCAACTAAAATTATTTTATTTAAAAAATAAAATATTAATATTTTGTTTAAAAAATATTTTTAAATTTTAATAGTATTTTAAATATATTATTGAATTTTAAAATATTTCATTAATATCTTTCTATTTTTATTTTTTAAAAAGTTTTTTTTTAAAAATAGACATATAATTTTATAAATAATATTAAAATTATTATTTTCAAACTTTGTAATGTTATTCTTGAAAATTCAGGTATAATTTTAAAAATATTTTTAAATATTTTAAAAATGAAAGCTTATTATTAATGAAAATTCATGCATATTTTTTAAATGTGTTATTAACGATAAAAATATTTTTAAATTTTTAATTTTTTTTAACTTATTAACAAAAATTTTGAAAATTCAAAAGTATTTTTAAAATATTTGTAAAAATTAAACGATATTTTATAAATATTTTTGGGAGTGTAAGAATATTTTTGAAATATAGTAGACTATTTTTAATACATTAAAGATATTTTATAAATTTTTTGAAAATTTAAAAATATTTTTATGGTTTAAGAGTATTTTAGAGATAAAAAGTAAAATTTATTGTTATTTTTTTACCATTTTTGAAGAGAGTTAAAAATGGGCAATTATGGTAAGAAATATAGAAATATAGAAATATATGGTAAAAAAAATGTAATAAATATTATTAAAATTTAAAATTGTTTGGTAATTTGCAGATGGGCTTATTGCTGTTCGTGTTGGCAAAGTGGGGCAGCTTCATCACCTTTTGGAATATCCTCCAATGCGGTAAATTTTTCTTTTACCATCTTTTTTTCATCCACCTAATTTCACTTTCTTTTTTTAAAATAAAAATAAGCTTTTAAATATTGAAAGAAATAATTTTGTGGTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTCTGACAAATGGATGTACTGATTGACTGGCACAGGATTCGTTGCGGTTTTCACCCTCCCCAAATTATTTACGCACGGTAAAAAACGCATCTCCACGGACTTAACTTTTCTATCTTTTATTCTTTTTTGGGTTACAATTCAATACGCCTGAGTACAACAAAACACCGTACTCCTCTGTCTTTTCATCCGTCGATTTGTTTGTGACCCTCTTTTGTTCCCTTCATAAAACGACCACGTTTTAAATTCTAAAAATTAAAATTCTTATATACTTTATTTGTCGGTAATTTATTTTCTTCTCTGTAAGTTCTCGTGTCAGTTCTGTCGGATCGGATGATTTGATGTTTGATTCAATCTCCACCCTTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTTAATTTTAAAATTTTTTATTTNCATCTTTGGATTAACTTTAATTTGGTTCGTGACTTATTTTTGTTTTTATGTTTCCATTTGTCCTCCAACCATTGAATCACATGAAACTTTAGCTTTAAATATCTAATTATTCTTAGGTAGCGTCTACTCCGTTCATAAATTTTGAAACGGGTTTAGATCCTAATAGGTGCTTTATTCATCGAACTATCCTTAGGTTAGTAGAAACATAATGACTTGCTAATATGAGGGGGCAATAGTTAGACTACGTGGCTTCCAAGTTGCCACGCGAAAATGGTTTTGCTTCCGGTTAATTTTCGTTCGATCGACGTTGGGTGTACCATCGGCGGGTTTTCACTCGTGTTCTAGGATAGTTCTGAAGAGCTGCTTTCTCTTTCCAATATCTTAATATTCCCTTGGAAAATAGTACTTCGACTCCAATTTCGAAGCAAAAGAGCCTATAGCACTGTACTTACGGGCTTAGAATCGAAATTCGAACCCTAATTGGGTTGTCTGAAGCACGCACATGAAAAAACGGAGTCATGTAAATCAATTTAATTGTCCTCTCATCTCTCAACTTGTTGGTCCCTCACTACTTGTGTGAAGAAAGTAAGGCTCCCTATGACACCCTATTTTCATAGGAATGGGGTGCCCTAAAGCCACCATGTGACCCTTCTTTAAGCCTCTACCAAGCATTTACTAGTCTTTGCCATATGAACTTGTTAACTCACCCTTTGTACTTCATATTAAGCGTCTACGATCGTTCGTCTTTTATCCCCCATCTCGTGCCCATTTGCCCTTTTGATCGGGACGATTGAGGTCTTTGTTTATCGACTTTTTGTTTGTCTATCTGTGTTTCTTTACTTTACTCGCATAATCAAATGGTTATCAAACAAAGTTTGTTTGTTTAGAAATGAGGCGGATTTGTGTTGATGTTTTTAAGAGTTCTTTTTTTGTGAATTAGGAGAACATTGGTTGAGACTTTGTGAGAGTTCTTGGCAGCTGAGTTCCCACAAGAAGGGAATGATTGTTGCTATCTTCCTTATGGTATGGAACTTCTCTTCGATTCTATATCGCGTTTGGGCAGGTAAACCATTTCGAACTGAAATCTTAATCTATATTGTTCAATGAGTTTCAATGAGTTTCGAGATGTAGATTCGAACGTGAAATGTTATTGAAATGAAGTATGATTTTGCAGCTTTCATAGCGTTTGTGAGCTTTCGCTACTACCAGGAATCATTAGGGAGAGATGGTTGGCTTAAAAATGGAGAAGCAGCTCGACATAACGACACGGTTTCGGGTAAGTTCAAAGGTTGAGAGATAATATTGATCAATTTTGAGGCTCTTTTTCTCTGCTTTCTTTTGTGCTAGCTTGAAAATTACCTTATAAATTAATGGAAAGTGTTTCCTTTTTAATTTGAAAGTGAGAAAATAATGCTTAAAATTTGTGACACTGAAGTAAACTAGAGTTATATGAATGAATCGAGACTACGTCCAAATGAAAGTCATCTTGAGAATAAGACGACTAATAAAAATTTAATAGAATTGAAAGTTCTTGAGAATAGGACGACTAATAAAAATTTAATAGAATTGAAAGTTACTACTTATATTGTGATATCTCGCATTGGTTGGAGAGGAGAACGAAACACCTTTATAAGGGTGCCAAAATCTTTCCCGAGTAGACGCGTTTTAAAGCTTTGAGGAGAAGCTTGAAAGAGAAACAATATCTGCTAGCGGTGGGTTTGAACTATTACAAATGGTATCAAGGCTAACACTAGGCTATGTTCCAGCGAGGAGGTTGTTCCCTGAAGGGGTAGACAAGCCCAAAGAGGACAATTTCTACTAGTGGTGGGTTTGAACCGTTAAAACTGGTATTAGAGCTAGACACCGTACTATGTCCTAGTGAGGAGGCTGTTCTCCGAAGGAGGTAGACACGAGGCCGTGTGCCAGTAAGGACGTTGGGCCCCGAAGGAGGGTGAATTTGGTGGGATCCCACATTGATTGGAGAAAGTAACGAATGCCAACGAGGATGCTAGGCTCCGAAGGGGGTGGATTTTGATATCCCACATTGGTTGAAAGGAAACCTTTCCATAGCAGACGCGTTTTTAAAGCCTGAAAGGGAAAGCCTAAAGAGGACAATATCTGCTAGCGATGAGCTTGGGCCGTTACATATAACAATAATGTGCATTTTATTTTCGACGTCTCAATCATAAAACTCCATAGTTAAGCGAGTTTTGCTTGTAGCAATTCTAGTACCGAATGTTGTTGGAGTTGGAGTTGGAG

mRNA sequence

CACAAACAGAGAATTCCCTGTTCTTCTGTTCAAACCTTGGAGTTCGTAGGACGCCATTTTTACACCTTGGGATTGGTTTACAGAGGGTTTTTGCTGTGCGTTCGTAGGCGGCGGCGATGGATTTGAGCCGGCGGAGGGCGGCGGTGGCAAGGGGCAACGTGGTGGCGGGGTCTGTCTGGGAAAGCAGAATCCGATTCGATGAAGTCCGTGGTGGGATTAGGGTTTTCAATGGAGACGATGAAACCGCCGAATGTAGGGTTCCGGCCGCTACCGTCGGCAGTGCAAGGAGGAAGACATGGAAATCCGATGAGAGTTTTAACTCGATTCAAATCGCCGAGGAAAAACCAGAATCACCGAGTAGCGGCGATGAACCGAATCGGAAAACCCCGATTCCGTCTCGGAGATTGAGATCCAACAACAGTCCAAACAAACCGGTACGAATAACAGAGAGAAACTCGACGAGGAAGAAAACCGATCAACCTCGAAAATCGGCCGTCGGGATTACCAAACCGCCGATGAACACGAACGGAATCAGAAAAATCTCCCCGGAGAAGACGGTTTCATCTCCTCCACCTCAAGATTTCTTCGATGCATTCGAAGAGATTAAGAACGAAAGCTTCGACGTTAAGGAAATCAATTTTCCAGGACAAGAAATTTTCCCGGGAAACAAACAGAAATTACAGAGACTAATGGATTTGATAATGTGGAGGGAGTTTTCAAGATCCGCCATGGCATTTGGAGCGGGGAATTTGGTTATAGCCCTCTCTTATTTCATCAAGAACATGAACATCAGCTTTATCAGTATGATTTCGCATATGGGTCTTGTTTATCTGGCTGCCATTTTCGTCCATAGCTCCATTTTTAGCAGGGGAAATGGAAAGGGAATCGATAGTGATGATGAACATTGTGTGGTTGAAGAAGAAGTGATTCGATTGGTTAAAGGGTTTGTTCCTTTCGTGAATGAATTGCTGCAAAATCTCAAGCCTCTGTTCCATGGAGATCCTTCTGCAACTATGAAGATGGGCTTATTGCTGTTCGTGTTGGCAAAGTGGGGCAGCTTCATCACCTTTTGGAATATCCTCCAATGCGGATTCGTTGCGGTTTTCACCCTCCCCAAATTATTTACGCACGGAGAACATTGGTTGAGACTTTGTGAGAGTTCTTGGCAGCTGAGTTCCCACAAGAAGGGAATGATTGTTGCTATCTTCCTTATGGTATGGAACTTCTCTTCGATTCTATATCGCGTTTGGGCAGCTTTCATAGCGTTTGTGAGCTTTCGCTACTACCAGGAATCATTAGGGAGAGATGGTTGGCTTAAAAATGGAGAAGCAGCTCGACATAACGACACGGTTTCGGGTAAGTTCAAAGGTTGAGAGATAATATTGATCAATTTTGAGGCTCTTTTTCTCTGCTTTCTTTTGTGCTAGCTTGAAAATTACCTTATAAATTAATGGAAAGTGTTTCCTTTTTAATTTGAAAGTGAGAAAATAATGCTTAAAATTTGTGACACTGAAGTAAACTAGAGTTATATGAATGAATCGAGACTACGTCCAAATGAAAGTCATCTTGAGAATAAGACGACTAATAAAAATTTAATAGAATTGAAAGTTCTTGAGAATAGGACGACTAATAAAAATTTAATAGAATTGAAAGTTACTACTTATATTGTGATATCTCGCATTGGTTGGAGAGGAGAACGAAACACCTTTATAAGGGTGCCAAAATCTTTCCCGAGTAGACGCGTTTTAAAGCTTTGAGGAGAAGCTTGAAAGAGAAACAATATCTGCTAGCGGTGGGTTTGAACTATTACAAATGGTATCAAGGCTAACACTAGGCTATGTTCCAGCGAGGAGGTTGTTCCCTGAAGGGGTAGACAAGCCCAAAGAGGACAATTTCTACTAGTGGTGGGTTTGAACCGTTAAAACTGGTATTAGAGCTAGACACCGTACTATGTCCTAGTGAGGAGGCTGTTCTCCGAAGGAGGTAGACACGAGGCCGTGTGCCAGTAAGGACGTTGGGCCCCGAAGGAGGGTGAATTTGGTGGGATCCCACATTGATTGGAGAAAGTAACGAATGCCAACGAGGATGCTAGGCTCCGAAGGGGGTGGATTTTGATATCCCACATTGGTTGAAAGGAAACCTTTCCATAGCAGACGCGTTTTTAAAGCCTGAAAGGGAAAGCCTAAAGAGGACAATATCTGCTAGCGATGAGCTTGGGCCGTTACATATAACAATAATGTGCATTTTATTTTCGACGTCTCAATCATAAAACTCCATAGTTAAGCGAGTTTTGCTTGTAGCAATTCTAGTACCGAATGTTGTTGGAGTTGGAGTTGGAG

Coding sequence (CDS)

ATGGATTTGAGCCGGCGGAGGGCGGCGGTGGCAAGGGGCAACGTGGTGGCGGGGTCTGTCTGGGAAAGCAGAATCCGATTCGATGAAGTCCGTGGTGGGATTAGGGTTTTCAATGGAGACGATGAAACCGCCGAATGTAGGGTTCCGGCCGCTACCGTCGGCAGTGCAAGGAGGAAGACATGGAAATCCGATGAGAGTTTTAACTCGATTCAAATCGCCGAGGAAAAACCAGAATCACCGAGTAGCGGCGATGAACCGAATCGGAAAACCCCGATTCCGTCTCGGAGATTGAGATCCAACAACAGTCCAAACAAACCGGTACGAATAACAGAGAGAAACTCGACGAGGAAGAAAACCGATCAACCTCGAAAATCGGCCGTCGGGATTACCAAACCGCCGATGAACACGAACGGAATCAGAAAAATCTCCCCGGAGAAGACGGTTTCATCTCCTCCACCTCAAGATTTCTTCGATGCATTCGAAGAGATTAAGAACGAAAGCTTCGACGTTAAGGAAATCAATTTTCCAGGACAAGAAATTTTCCCGGGAAACAAACAGAAATTACAGAGACTAATGGATTTGATAATGTGGAGGGAGTTTTCAAGATCCGCCATGGCATTTGGAGCGGGGAATTTGGTTATAGCCCTCTCTTATTTCATCAAGAACATGAACATCAGCTTTATCAGTATGATTTCGCATATGGGTCTTGTTTATCTGGCTGCCATTTTCGTCCATAGCTCCATTTTTAGCAGGGGAAATGGAAAGGGAATCGATAGTGATGATGAACATTGTGTGGTTGAAGAAGAAGTGATTCGATTGGTTAAAGGGTTTGTTCCTTTCGTGAATGAATTGCTGCAAAATCTCAAGCCTCTGTTCCATGGAGATCCTTCTGCAACTATGAAGATGGGCTTATTGCTGTTCGTGTTGGCAAAGTGGGGCAGCTTCATCACCTTTTGGAATATCCTCCAATGCGGATTCGTTGCGGTTTTCACCCTCCCCAAATTATTTACGCACGGAGAACATTGGTTGAGACTTTGTGAGAGTTCTTGGCAGCTGAGTTCCCACAAGAAGGGAATGATTGTTGCTATCTTCCTTATGGTATGGAACTTCTCTTCGATTCTATATCGCGTTTGGGCAGCTTTCATAGCGTTTGTGAGCTTTCGCTACTACCAGGAATCATTAGGGAGAGATGGTTGGCTTAAAAATGGAGAAGCAGCTCGACATAACGACACGGTTTCGGGTAAGTTCAAAGGTTGA

Protein sequence

MDLSRRRAAVARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVGSARRKTWKSDESFNSIQIAEEKPESPSSGDEPNRKTPIPSRRLRSNNSPNKPVRITERNSTRKKTDQPRKSAVGITKPPMNTNGIRKISPEKTVSSPPPQDFFDAFEEIKNESFDVKEINFPGQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQNLKPLFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDGWLKNGEAARHNDTVSGKFKG

Homology

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BLAST of CmaCh12G011520 vs. Swiss-Prot
Match: RTNLS_ARATH (Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2)

HSP 1 Score: 190.7 bits (483), Expect = 3.3e-47
Identity = 122/352 (34.66%), Postives = 191/352 (54.26%), Query Frame = 1


Query: 59  KTWKSDESFNSIQIAEEKPESPSSGDEPNRKTPIPSRRLRSNNSPNKPVRITERNSTRKK 118
           K+ ++++  N  Q   ++ +    GDE         R +   +   K + + + N     
Sbjct: 113 KSNENEQIDNGDQEIGDQDDYEEDGDEEEE------REVEKKSVDVKEINVAKENRVGGV 172

Query: 119 TDQPRKSAVGITKPPMNTNGIRKISPE-----KTVSSPPPQDFFDAFEEIKNESFDVKEI 178
             +        T P  + + +RKISP       +V S PP            + F  +E 
Sbjct: 173 EIKKFSQFQNRTSP--SPSSVRKISPPVIKRATSVYSAPPNS------TSSTDRFAEQED 232

Query: 179 NFPGQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISH 238
           NF   +       KLQ L+DL+MWR+ SRS + FG G  +I  S +  ++N SFIS++++
Sbjct: 233 NFTHSQ------SKLQSLVDLVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVVAY 292

Query: 239 MGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVV---EEEVIRLVKGFVPFVNELLQNLKP 298
           MGL+YL  +FV  S+  RG    +  ++ H VV   EE+V R+++  +P++NE L  L+ 
Sbjct: 293 MGLIYLGLMFVLKSLIHRG----MVEEERHKVVGVREEDVKRMLRLIMPYLNESLHQLRA 352

Query: 299 LFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLF--------THGEHW 358
           LF GDPS T+KMG++LFVLA+ GS IT WN+ + GF+  FT+PK+F         +G  W
Sbjct: 353 LFSGDPSTTLKMGVVLFVLARCGSSITLWNLAKFGFLGAFTIPKIFISYSTHFSAYGNFW 412

Query: 359 LRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESL 395
           +R    +W+  +HKK + +A+F +VWN SS+  RVWAAF+  V+FRYYQ  +
Sbjct: 413 MRRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWAAFMLLVAFRYYQHKM 440

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BLAST of CmaCh12G011520 vs. Swiss-Prot
Match: RTNLQ_ARATH (Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-25
Identity = 72/213 (33.80%), Postives = 115/213 (53.99%), Query Frame = 1


Query: 191 LMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLAAIFVHSSIFS 250
           + DL+MWR+ ++S + FG G L    S F K +N S  S +S++GLV L   F+ +++  
Sbjct: 168 ISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNTLCQ 227

Query: 251 RGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQNLKPLFHGDPSATMKMGLLLFVLA 310
           R N    D+     V E++V+R  +  +P  N  +     LF G+PS T+K+   L + A
Sbjct: 228 RKNE---DTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLGA 287

Query: 311 KWGSFITFWNILQCGFVAVFTLPKLFTHGEHWL---------RLCESSWQLSSHKKGMIV 370
           ++G  IT W +   GF   FT+PKL++   H +         R+ E +W + SHKK +  
Sbjct: 288 EYGHLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGE-AWGVCSHKKILAG 347

Query: 371 AIFLMVWNFSSILYRVWAAFIAFVSFRYYQESL 395
           +     WN +SI  R++A FI  V FRY +++L
Sbjct: 348 SAVTAFWNLTSIRTRIFAVFIILVIFRYRRQNL 376

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BLAST of CmaCh12G011520 vs. Swiss-Prot
Match: RTNLR_ARATH (Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-21
Identity = 66/230 (28.70%), Postives = 120/230 (52.17%), Query Frame = 1


Query: 178 QEIFPGNKQKL-QRLMDLIMWREFSRSAMAFGAGNLVIALSYFI-KNMNISFISMISHMG 237
           Q++  G+ +++ + + DLIMWR+ ++S + FG G +    + F  K  N S  S IS++G
Sbjct: 181 QDVCQGDLERIRENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSVFSAISYLG 240

Query: 238 LVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQNLKPLFHGD 297
           L++L   F+ +++  R      ++  E  + E++V+R+ +  +P  N  +     LF G+
Sbjct: 241 LLFLGVSFLSNTLRQRVTE---EARRELKLSEDDVLRIARRMLPITNLAISKTSELFSGE 300

Query: 298 PSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWL--------RLCE 357
           P+ T+K+   + + A++G  IT W +   GF   FT+PKL++     L        R   
Sbjct: 301 PAMTLKVAPFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFV 360

Query: 358 SSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRD 398
            +W + +HKK +  +     WN +S+  R  A FI  V  RY +++L  D
Sbjct: 361 EAWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVVVIRYRRQNLQLD 407

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BLAST of CmaCh12G011520 vs. TrEMBL
Match: A0A0A0LG57_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_2G009500 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 1.2e-160
Identity = 315/443 (71.11%), Postives = 352/443 (79.46%), Query Frame = 1


Query: 1   MDLSRRRAAVA-RGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVP--AATVGSAR 60
           MDLSRRRAAVA +GNVVAGSVWESRIRFDEVRGGI+VFNGDDE  EC +P  AA+ GS R
Sbjct: 1   MDLSRRRAAVAAKGNVVAGSVWESRIRFDEVRGGIKVFNGDDENVECGIPTTAASAGSGR 60

Query: 61  RKTWKSDESFNSIQIAEEKPES-PSSGDEPNRKTPIPSRRLRSNNSPNKPVRIT----ER 120
           RKTWKSDE FN I IAEEKPES PSSGDE +RK+P PSRRLRSN+SPNKPV+++    ER
Sbjct: 61  RKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNSSPNKPVQVSGEKIER 120

Query: 121 NSTRKKTDQPRKSAVGITKPPMNTNGIRKISPEKT-----------VSSPPPQDFFDAFE 180
           NSTRKKTDQ RKSAVG+TKPP  TNGI K S EK+           +SS   QDFFDAFE
Sbjct: 121 NSTRKKTDQSRKSAVGLTKPP--TNGIGKTSSEKSFKESNECREKVISSSTSQDFFDAFE 180

Query: 181 E-IKNESFDVKEINFPGQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIA 240
           E I+ ESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNLVI 
Sbjct: 181 EEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNLVII 240

Query: 241 LSYFIKNMNISFISMISHMGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEE-VIRLV 300
           LS FIKN+NIS IS+ISHMGL+YL  IFVHSSIF  G  K IDS+DE+ VVEEE +IR  
Sbjct: 241 LSCFIKNINISLISLISHMGLLYLTTIFVHSSIF--GRRKRIDSNDENLVVEEEDMIRFA 300

Query: 301 KGFVPFVNELLQNLKPLFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPK 360
           K  VPFVNELLQNLK LF GDPSATMK+G+LLFVLAKWGSFIT WN+L+ GF+ VFTLPK
Sbjct: 301 KRLVPFVNELLQNLKALFRGDPSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFTLPK 360

Query: 361 LFTHGEHWLRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESL 418
           L THGEHWL+LC SSW+L SHK+G+ +AIF +VWNFSS LYRVWAAFI  VSFRYYQES 
Sbjct: 361 LITHGEHWLKLCGSSWKLCSHKRGVFIAIFFLVWNFSSTLYRVWAAFIVLVSFRYYQESP 420

[Close]

BLAST of CmaCh12G011520 vs. TrEMBL
Match: A0A068URL0_COFCA (Reticulon-like protein OS=Coffea canephora GN=GSCOC_T00030875001 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.2e-53
Identity = 126/315 (40.00%), Postives = 178/315 (56.51%), Query Frame = 1


Query: 109 ITERNSTRKKTDQPRK--SAVGITKPPMNTNGIRKISPEKTVSSPPPQDFFDAFEEIKNE 168
           + E    R+  ++P    S V    PP+ ++   ++ P  T   P P +F  +       
Sbjct: 366 VVEEKKFRQSNERPMSIPSLVKKQSPPVVSHA--RVHPSPTKKRPIPDEFRGS------- 425

Query: 169 SFDVKEINFPGQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNIS 228
                          P  + KLQ ++DL+MWR+ S+SA  FG G  +I  S + K++NIS
Sbjct: 426 ---------------PRTRSKLQSIVDLVMWRDASKSAFVFGIGTFIIISSSYAKDLNIS 485

Query: 229 FISMISHMGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQ 288
            IS++S++GL+YLAAIF+  S+ SRG     DS  ++ V EEE + LVK  +P VNE L 
Sbjct: 486 AISVLSYLGLIYLAAIFLFRSLISRGAVDLDDSSTDYVVGEEEAVWLVKLILPCVNEFLL 545

Query: 289 NLKPLFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPK--------LFTH 348
            +K LF GDP+ TMKM LLLFVLA+ GS IT W +++ GF  VFT+PK        L  +
Sbjct: 546 KIKALFSGDPATTMKMALLLFVLARCGSSITIWKMVKLGFFGVFTVPKVCSSYSTQLTAY 605

Query: 349 GEHWLRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDG 408
           G  W+R    +W+  SHKK +  AIF +VWN SSI+ R+WA F+ FV++RYYQ S   +G
Sbjct: 606 GVFWIRRFRDAWESCSHKKAVAFAIFTLVWNLSSIVARIWAVFMLFVAYRYYQPSFIGEG 656

Query: 409 WLKNGEAARHNDTVS 414
           W    E  R  D+ S
Sbjct: 666 WATAEEQTRAEDSSS 656

[Close]

BLAST of CmaCh12G011520 vs. TrEMBL
Match: A0A0D2SI09_GOSRA (Reticulon-like protein OS=Gossypium raimondii GN=B456_013G216600 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.1e-52
Identity = 111/246 (45.12%), Postives = 161/246 (65.45%), Query Frame = 1


Query: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLA 240
           FP  + KLQ ++DL+MWR+  +SA+ FG G+ +I  S + +++NISFIS+IS+MGLVYLA
Sbjct: 341 FPQTQNKLQNIVDLVMWRDIPKSALMFGIGSFIIISSSYTQDLNISFISVISYMGLVYLA 400

Query: 241 AIFVHSSIFSRGNGKGIDSDDEHCVV-EEEVIRLVKGFVPFVNELLQNLKPLFHGDPSAT 300
           AIF++ SI  RG    ++ D+ +CVV EEE I L+K  +P++NE L  L+ LF GDPS T
Sbjct: 401 AIFLYRSILCRG---VVEIDESNCVVGEEEAIWLLKLVLPYLNEFLLKLRALFSGDPSTT 460

Query: 301 MKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFT--------HGEHWLRLCESSWQ 360
           MKM +LLFVLA+ GS IT W + + GF  VF +PKL T        +G+ W+     +W+
Sbjct: 461 MKMAVLLFVLARCGSSITIWKMAKLGFFGVFIVPKLCTSYSHQLTAYGKFWIGRFRDAWE 520

Query: 361 LSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDGWLKNGEAARHNDT 418
             +HKK + + +F +VWN  S L R+WAAF+ FV+ RYYQ+ +  D W++  E    N +
Sbjct: 521 SCTHKKAVAMVLFTLVWNLCSTLARIWAAFMLFVALRYYQQKM-TDEWMEKEEGLCGNGS 580

[Close]

BLAST of CmaCh12G011520 vs. TrEMBL
Match: M5VUB7_PRUPE (Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa002580mg PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 124/303 (40.92%), Postives = 178/303 (58.75%), Query Frame = 1


Query: 121 QPRKSAVGITKPPMNTNGIRKISPEKTVSSPPPQDFFDAFEEIKNESFDVKEINFPGQEI 180
           +P   ++ +TKP      +  I      S+ P Q  F A  E  N +             
Sbjct: 341 EPEPISLNLTKP------LPVIKRATVHSNIPKQTSFAASNEYHNHTS------------ 400

Query: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLA 240
           F     +LQ L+DLIMW++ SRS   FG G  VI  S + K++NISFIS+IS++GL+YLA
Sbjct: 401 FQETHSRLQSLVDLIMWKDISRSVFVFGMGTFVILSSSYTKDLNISFISVISYLGLLYLA 460

Query: 241 AIFVHSSIFSRGNGKGIDSDDEHCVV-EEEVIRLVKGFVPFVNELLQNLKPLFHGDPSAT 300
            IF+  SI  RG    ++ D+ + VV EEE + L+K  +P++NELL  +K LF GDP+ T
Sbjct: 461 VIFLFKSIICRG---AVEVDNANYVVGEEEAMWLLKLVLPYLNELLLKMKALFSGDPATT 520

Query: 301 MKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPK--------LFTHGEHWLRLCESSWQ 360
           +K+ +LLFVLA+ GS IT W + + GF  VFTLPK        L  + + W+R    +W+
Sbjct: 521 IKLAVLLFVLARCGSSITIWTMSKVGFFGVFTLPKVCSLYSAQLTVYAKFWIRRFRDAWE 580

Query: 361 LSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDGWLKNGEAARHNDT 415
             +HKK + VAIFL+VWN SS++ R+WAAFI  V+FRYYQ+ L  + W++  E    +D 
Sbjct: 581 SCTHKKALTVAIFLLVWNLSSVVARIWAAFILVVAFRYYQQKLVTEEWVEEEEEEADDDG 622

[Close]

BLAST of CmaCh12G011520 vs. TrEMBL
Match: V4SBM5_9ROSI (Reticulon-like protein OS=Citrus clementina GN=CICLE_v10028046mg PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 109/226 (48.23%), Postives = 152/226 (67.26%), Query Frame = 1


Query: 185 KQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLAAIFV 244
           K KLQ L+DL+MWR+ S+SA  FG G  +I  S +  ++NISFIS+IS++GL+YLA IF+
Sbjct: 334 KSKLQNLVDLVMWRDVSKSAFVFGIGTFIIISSSYATDLNISFISVISYLGLIYLAVIFL 393

Query: 245 HSSIFSRGNGKGIDSDDEHCVV-EEEVIRLVKGFVPFVNELLQNLKPLFHGDPSATMKMG 304
           + +I  RG    ID DD   V+ E E I L+K  +P++NE L  LK LF GDP+ TMK+ 
Sbjct: 394 YRAIICRGI---IDIDDSSYVLGEGEAIWLLKLILPYLNEFLLKLKALFSGDPATTMKLA 453

Query: 305 LLLFVLAKWGSFITFWNILQCGFVAVFTLPK--------LFTHGEHWLRLCESSWQLSSH 364
           +LLFVLA+ GS IT W +++ GF  VF +PK        L  +G+ W+R    +W   SH
Sbjct: 454 VLLFVLARCGSSITIWKMIKVGFFGVFIVPKVCSSYSTQLAAYGKFWIRRFRDAWDSCSH 513

Query: 365 KKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDGWLK 402
           KK + V IF +VWN SS++ R+WAAF+ FV+ RYYQ+S+ RD W++
Sbjct: 514 KKAVAVGIFTLVWNLSSMIARIWAAFMLFVALRYYQQSMIRDDWVE 556

[Close]

BLAST of CmaCh12G011520 vs. TAIR10
Match: AT5G58000.1 (AT5G58000.1 Reticulon family protein)

HSP 1 Score: 190.7 bits (483), Expect = 1.9e-48
Identity = 122/352 (34.66%), Postives = 191/352 (54.26%), Query Frame = 1


Query: 59  KTWKSDESFNSIQIAEEKPESPSSGDEPNRKTPIPSRRLRSNNSPNKPVRITERNSTRKK 118
           K+ ++++  N  Q   ++ +    GDE         R +   +   K + + + N     
Sbjct: 113 KSNENEQIDNGDQEIGDQDDYEEDGDEEEE------REVEKKSVDVKEINVAKENRVGGV 172

Query: 119 TDQPRKSAVGITKPPMNTNGIRKISPE-----KTVSSPPPQDFFDAFEEIKNESFDVKEI 178
             +        T P  + + +RKISP       +V S PP            + F  +E 
Sbjct: 173 EIKKFSQFQNRTSP--SPSSVRKISPPVIKRATSVYSAPPNS------TSSTDRFAEQED 232

Query: 179 NFPGQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISH 238
           NF   +       KLQ L+DL+MWR+ SRS + FG G  +I  S +  ++N SFIS++++
Sbjct: 233 NFTHSQ------SKLQSLVDLVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVVAY 292

Query: 239 MGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVV---EEEVIRLVKGFVPFVNELLQNLKP 298
           MGL+YL  +FV  S+  RG    +  ++ H VV   EE+V R+++  +P++NE L  L+ 
Sbjct: 293 MGLIYLGLMFVLKSLIHRG----MVEEERHKVVGVREEDVKRMLRLIMPYLNESLHQLRA 352

Query: 299 LFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLF--------THGEHW 358
           LF GDPS T+KMG++LFVLA+ GS IT WN+ + GF+  FT+PK+F         +G  W
Sbjct: 353 LFSGDPSTTLKMGVVLFVLARCGSSITLWNLAKFGFLGAFTIPKIFISYSTHFSAYGNFW 412

Query: 359 LRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESL 395
           +R    +W+  +HKK + +A+F +VWN SS+  RVWAAF+  V+FRYYQ  +
Sbjct: 413 MRRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWAAFMLLVAFRYYQHKM 440

[Close]

BLAST of CmaCh12G011520 vs. TAIR10
Match: AT2G20590.1 (AT2G20590.1 Reticulon family protein)

HSP 1 Score: 118.6 bits (296), Expect = 9.0e-27
Identity = 72/213 (33.80%), Postives = 115/213 (53.99%), Query Frame = 1


Query: 191 LMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLAAIFVHSSIFS 250
           + DL+MWR+ ++S + FG G L    S F K +N S  S +S++GLV L   F+ +++  
Sbjct: 168 ISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNTLCQ 227

Query: 251 RGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQNLKPLFHGDPSATMKMGLLLFVLA 310
           R N    D+     V E++V+R  +  +P  N  +     LF G+PS T+K+   L + A
Sbjct: 228 RKNE---DTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLGA 287

Query: 311 KWGSFITFWNILQCGFVAVFTLPKLFTHGEHWL---------RLCESSWQLSSHKKGMIV 370
           ++G  IT W +   GF   FT+PKL++   H +         R+ E +W + SHKK +  
Sbjct: 288 EYGHLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGE-AWGVCSHKKILAG 347

Query: 371 AIFLMVWNFSSILYRVWAAFIAFVSFRYYQESL 395
           +     WN +SI  R++A FI  V FRY +++L
Sbjct: 348 SAVTAFWNLTSIRTRIFAVFIILVIFRYRRQNL 376

[Close]

BLAST of CmaCh12G011520 vs. TAIR10
Match: AT4G28430.1 (AT4G28430.1 Reticulon family protein)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-22
Identity = 66/230 (28.70%), Postives = 120/230 (52.17%), Query Frame = 1


Query: 178 QEIFPGNKQKL-QRLMDLIMWREFSRSAMAFGAGNLVIALSYFI-KNMNISFISMISHMG 237
           Q++  G+ +++ + + DLIMWR+ ++S + FG G +    + F  K  N S  S IS++G
Sbjct: 181 QDVCQGDLERIRENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSVFSAISYLG 240

Query: 238 LVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQNLKPLFHGD 297
           L++L   F+ +++  R      ++  E  + E++V+R+ +  +P  N  +     LF G+
Sbjct: 241 LLFLGVSFLSNTLRQRVTE---EARRELKLSEDDVLRIARRMLPITNLAISKTSELFSGE 300

Query: 298 PSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWL--------RLCE 357
           P+ T+K+   + + A++G  IT W +   GF   FT+PKL++     L        R   
Sbjct: 301 PAMTLKVAPFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFV 360

Query: 358 SSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRD 398
            +W + +HKK +  +     WN +S+  R  A FI  V  RY +++L  D
Sbjct: 361 EAWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVVVIRYRRQNLQLD 407

[Close]

BLAST of CmaCh12G011520 vs. NCBI nr
Match: gi|659070755|ref|XP_008456496.1| (PREDICTED: reticulon-like protein B21 [Cucumis melo])

HSP 1 Score: 578.2 bits (1489), Expect = 1.2e-161
Identity = 322/446 (72.20%), Postives = 352/446 (78.92%), Query Frame = 1


Query: 1   MDLSRRRAAVA-RGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVP-----AATVG 60
           MDLSRRRAAVA RGNVVAGSVWESRIRFDEVRGGI+VFNGDDE AEC VP     AA  G
Sbjct: 1   MDLSRRRAAVAARGNVVAGSVWESRIRFDEVRGGIKVFNGDDENAECGVPTTAASAAAGG 60

Query: 61  SARRKTWKSDESFNSIQIAEEKPES-PSSGDEPNRKTPIPSRRLRSNNSPNKPVRI---- 120
           S RRKTWKSDE FN I IAEEKPES PSSGDE +RK+P PSRRLRSN SPNKPV++    
Sbjct: 61  SGRRKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNGSPNKPVQVSGEK 120

Query: 121 TERNSTRKKTDQPRKSAVGITKPPMNTNGIRKISPEKT-----------VSSPPPQDFFD 180
           TERNSTRKKTDQ RKS VG+TKPP  TNGI K S EK+           +SS   QDFFD
Sbjct: 121 TERNSTRKKTDQSRKSVVGLTKPP--TNGIGKTSSEKSFKELNECKEKVISSSTSQDFFD 180

Query: 181 AFEE-IKNESFDVKEINFPGQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNL 240
           AFEE I+ ESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNL
Sbjct: 181 AFEEEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNL 240

Query: 241 VIALSYFIKNMNISFISMISHMGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEE-VI 300
           VI LS FIKN+NISFIS+ISHMGL+YL AIFVHSSIF  G  K IDSDDE+ VVEEE +I
Sbjct: 241 VIILSCFIKNINISFISLISHMGLLYLTAIFVHSSIF--GRRKRIDSDDENFVVEEEDMI 300

Query: 301 RLVKGFVPFVNELLQNLKPLFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFT 360
           R  K  VPFVNELLQNLK LF GD SATMK+G+LLFVLAKWGSFIT WN+L+ GF+ VFT
Sbjct: 301 RFAKRSVPFVNELLQNLKALFRGDSSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFT 360

Query: 361 LPKLFTHGEHWLRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQ 418
           LPKL THGEHWL+LC SSW+L SHK+G+ VAIF +VWNFSS LYRVWAAFI  VSFRYYQ
Sbjct: 361 LPKLITHGEHWLKLCGSSWKLCSHKRGVFVAIFFLVWNFSSTLYRVWAAFIVLVSFRYYQ 420

[Close]

BLAST of CmaCh12G011520 vs. NCBI nr
Match: gi|449442977|ref|XP_004139257.1| (PREDICTED: reticulon-like protein B18 [Cucumis sativus])

HSP 1 Score: 574.3 bits (1479), Expect = 1.7e-160
Identity = 315/443 (71.11%), Postives = 352/443 (79.46%), Query Frame = 1


Query: 1   MDLSRRRAAVA-RGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVP--AATVGSAR 60
           MDLSRRRAAVA +GNVVAGSVWESRIRFDEVRGGI+VFNGDDE  EC +P  AA+ GS R
Sbjct: 1   MDLSRRRAAVAAKGNVVAGSVWESRIRFDEVRGGIKVFNGDDENVECGIPTTAASAGSGR 60

Query: 61  RKTWKSDESFNSIQIAEEKPES-PSSGDEPNRKTPIPSRRLRSNNSPNKPVRIT----ER 120
           RKTWKSDE FN I IAEEKPES PSSGDE +RK+P PSRRLRSN+SPNKPV+++    ER
Sbjct: 61  RKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNSSPNKPVQVSGEKIER 120

Query: 121 NSTRKKTDQPRKSAVGITKPPMNTNGIRKISPEKT-----------VSSPPPQDFFDAFE 180
           NSTRKKTDQ RKSAVG+TKPP  TNGI K S EK+           +SS   QDFFDAFE
Sbjct: 121 NSTRKKTDQSRKSAVGLTKPP--TNGIGKTSSEKSFKESNECREKVISSSTSQDFFDAFE 180

Query: 181 E-IKNESFDVKEINFPGQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIA 240
           E I+ ESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNLVI 
Sbjct: 181 EEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNLVII 240

Query: 241 LSYFIKNMNISFISMISHMGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEE-VIRLV 300
           LS FIKN+NIS IS+ISHMGL+YL  IFVHSSIF  G  K IDS+DE+ VVEEE +IR  
Sbjct: 241 LSCFIKNINISLISLISHMGLLYLTTIFVHSSIF--GRRKRIDSNDENLVVEEEDMIRFA 300

Query: 301 KGFVPFVNELLQNLKPLFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPK 360
           K  VPFVNELLQNLK LF GDPSATMK+G+LLFVLAKWGSFIT WN+L+ GF+ VFTLPK
Sbjct: 301 KRLVPFVNELLQNLKALFRGDPSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFTLPK 360

Query: 361 LFTHGEHWLRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESL 418
           L THGEHWL+LC SSW+L SHK+G+ +AIF +VWNFSS LYRVWAAFI  VSFRYYQES 
Sbjct: 361 LITHGEHWLKLCGSSWKLCSHKRGVFIAIFFLVWNFSSTLYRVWAAFIVLVSFRYYQESP 420

[Close]

BLAST of CmaCh12G011520 vs. NCBI nr
Match: gi|661886296|emb|CDP10218.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 218.0 bits (554), Expect = 3.1e-53
Identity = 126/315 (40.00%), Postives = 178/315 (56.51%), Query Frame = 1


Query: 109 ITERNSTRKKTDQPRK--SAVGITKPPMNTNGIRKISPEKTVSSPPPQDFFDAFEEIKNE 168
           + E    R+  ++P    S V    PP+ ++   ++ P  T   P P +F  +       
Sbjct: 366 VVEEKKFRQSNERPMSIPSLVKKQSPPVVSHA--RVHPSPTKKRPIPDEFRGS------- 425

Query: 169 SFDVKEINFPGQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNIS 228
                          P  + KLQ ++DL+MWR+ S+SA  FG G  +I  S + K++NIS
Sbjct: 426 ---------------PRTRSKLQSIVDLVMWRDASKSAFVFGIGTFIIISSSYAKDLNIS 485

Query: 229 FISMISHMGLVYLAAIFVHSSIFSRGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQ 288
            IS++S++GL+YLAAIF+  S+ SRG     DS  ++ V EEE + LVK  +P VNE L 
Sbjct: 486 AISVLSYLGLIYLAAIFLFRSLISRGAVDLDDSSTDYVVGEEEAVWLVKLILPCVNEFLL 545

Query: 289 NLKPLFHGDPSATMKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPK--------LFTH 348
            +K LF GDP+ TMKM LLLFVLA+ GS IT W +++ GF  VFT+PK        L  +
Sbjct: 546 KIKALFSGDPATTMKMALLLFVLARCGSSITIWKMVKLGFFGVFTVPKVCSSYSTQLTAY 605

Query: 349 GEHWLRLCESSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDG 408
           G  W+R    +W+  SHKK +  AIF +VWN SSI+ R+WA F+ FV++RYYQ S   +G
Sbjct: 606 GVFWIRRFRDAWESCSHKKAVAFAIFTLVWNLSSIVARIWAVFMLFVAYRYYQPSFIGEG 656

Query: 409 WLKNGEAARHNDTVS 414
           W    E  R  D+ S
Sbjct: 666 WATAEEQTRAEDSSS 656

[Close]

BLAST of CmaCh12G011520 vs. NCBI nr
Match: gi|823262093|ref|XP_012463786.1| (PREDICTED: reticulon-like protein B21 isoform X2 [Gossypium raimondii])

HSP 1 Score: 214.2 bits (544), Expect = 4.5e-52
Identity = 111/246 (45.12%), Postives = 161/246 (65.45%), Query Frame = 1


Query: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLA 240
           FP  + KLQ ++DL+MWR+  +SA+ FG G+ +I  S + +++NISFIS+IS+MGLVYLA
Sbjct: 341 FPQTQNKLQNIVDLVMWRDIPKSALMFGIGSFIIISSSYTQDLNISFISVISYMGLVYLA 400

Query: 241 AIFVHSSIFSRGNGKGIDSDDEHCVV-EEEVIRLVKGFVPFVNELLQNLKPLFHGDPSAT 300
           AIF++ SI  RG    ++ D+ +CVV EEE I L+K  +P++NE L  L+ LF GDPS T
Sbjct: 401 AIFLYRSILCRG---VVEIDESNCVVGEEEAIWLLKLVLPYLNEFLLKLRALFSGDPSTT 460

Query: 301 MKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFT--------HGEHWLRLCESSWQ 360
           MKM +LLFVLA+ GS IT W + + GF  VF +PKL T        +G+ W+     +W+
Sbjct: 461 MKMAVLLFVLARCGSSITIWKMAKLGFFGVFIVPKLCTSYSHQLTAYGKFWIGRFRDAWE 520

Query: 361 LSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDGWLKNGEAARHNDT 418
             +HKK + + +F +VWN  S L R+WAAF+ FV+ RYYQ+ +  D W++  E    N +
Sbjct: 521 SCTHKKAVAMVLFTLVWNLCSTLARIWAAFMLFVALRYYQQKM-TDEWMEKEEGLCGNGS 580

[Close]

BLAST of CmaCh12G011520 vs. NCBI nr
Match: gi|1009109867|ref|XP_015892572.1| (PREDICTED: reticulon-like protein B21 [Ziziphus jujuba])

HSP 1 Score: 213.8 bits (543), Expect = 5.9e-52
Identity = 113/231 (48.92%), Postives = 154/231 (66.67%), Query Frame = 1


Query: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLA 240
           FP +  +LQ  +DLIMW++ SRS   FG G  +I  S + K++NISFIS+IS++GLVYLA
Sbjct: 421 FPESHNRLQSFVDLIMWKDISRSVFIFGIGTFIILSSSYTKDLNISFISVISYLGLVYLA 480

Query: 241 AIFVHSSIFSRGNGKGIDSDDEHCVV-EEEVIRLVKGFVPFVNELLQNLKPLFHGDPSAT 300
            +F+  SI  RG    ID D+   VV EEE I L+K  +P++NE L  LK LF GDP  T
Sbjct: 481 TVFLFRSIIYRGV---IDIDNTSYVVGEEESIWLLKLVLPYLNEFLLKLKALFSGDPCTT 540

Query: 301 MKMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPK---LFTH-----GEHWLRLCESSWQ 360
           MK+  LLFVLA+ G+ IT W + + GF  VFT+PK   L++H      + W+R    +W 
Sbjct: 541 MKLAALLFVLARCGNSITIWTMAKLGFFGVFTVPKVCSLYSHQITAYAKFWVRRFRDAWN 600

Query: 361 LSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDGWLKN 403
             SHKK + VAIFL+VWN SSI+ R+WA F+ FV+FRYYQ+S+  D W+++
Sbjct: 601 SCSHKKALTVAIFLLVWNLSSIVARIWAVFMLFVAFRYYQQSIATDEWMED 648

The following BLAST results are available for this feature:

BLAST of CmaCh12G011520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLS_ARATH	3.3e-47	34.66	Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2	[more]
RTNLQ_ARATH	1.6e-25	33.80	Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1	[more]
RTNLR_ARATH	2.4e-21	28.70	Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2	[more]

BLAST of CmaCh12G011520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG57_CUCSA	1.2e-160	71.11	Reticulon-like protein OS=Cucumis sativus GN=Csa_2G009500 PE=4 SV=1	[more]
A0A068URL0_COFCA	2.2e-53	40.00	Reticulon-like protein OS=Coffea canephora GN=GSCOC_T00030875001 PE=4 SV=1	[more]
A0A0D2SI09_GOSRA	3.1e-52	45.12	Reticulon-like protein OS=Gossypium raimondii GN=B456_013G216600 PE=4 SV=1	[more]
M5VUB7_PRUPE	1.2e-51	40.92	Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa002580mg PE=4 SV=1	[more]
V4SBM5_9ROSI	1.6e-51	48.23	Reticulon-like protein OS=Citrus clementina GN=CICLE_v10028046mg PE=4 SV=1	[more]

BLAST of CmaCh12G011520 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58000.1	1.9e-48	34.66	Reticulon family protein	[more]
AT2G20590.1	9.0e-27	33.80	Reticulon family protein	[more]
AT4G28430.1	1.4e-22	28.70	Reticulon family protein	[more]

BLAST of CmaCh12G011520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070755\|ref\|XP_008456496.1\|	1.2e-161	72.20	PREDICTED: reticulon-like protein B21 [Cucumis melo]	[more]
gi\|449442977\|ref\|XP_004139257.1\|	1.7e-160	71.11	PREDICTED: reticulon-like protein B18 [Cucumis sativus]	[more]
gi\|661886296\|emb\|CDP10218.1\|	3.1e-53	40.00	unnamed protein product [Coffea canephora]	[more]
gi\|823262093\|ref\|XP_012463786.1\|	4.5e-52	45.12	PREDICTED: reticulon-like protein B21 isoform X2 [Gossypium raimondii]	[more]
gi\|1009109867\|ref\|XP_015892572.1\|	5.9e-52	48.92	PREDICTED: reticulon-like protein B21 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G011520.1	CmaCh12G011520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 192..338 score: 9.4
IPR003388	Reticulon	PROFILE	PS50845	RETICULON	coord: 191..336 score: 14
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 68..401 score: 5.3
None	No IPR available	PANTHER	PTHR10994:SF84	RETICULON-LIKE PROTEIN B21	coord: 68..401 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G011520	Cucsa.132850	Cucumber (Gy14) v1	cgycmaB0364
CmaCh12G011520	Cla013614	Watermelon (97103) v1	cmawmB170
CmaCh12G011520	Csa2G009500	Cucumber (Chinese Long) v2	cmacuB173
CmaCh12G011520	MELO3C004426	Melon (DHL92) v3.5.1	cmameB172
CmaCh12G011520	ClCG02G017090	Watermelon (Charleston Gray)	cmawcgB156
CmaCh12G011520	CSPI02G02520	Wild cucumber (PI 183967)	cmacpiB174
CmaCh12G011520	CmoCh05G012610	Cucurbita moschata (Rifu)	cmacmoB190
CmaCh12G011520	CmoCh12G011720	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G011520	Lsi11G004030	Bottle gourd (USVL1VR-Ls)	cmalsiB159
CmaCh12G011520	Cp4.1LG11g10190	Cucurbita pepo (Zucchini)	cmacpeB171
CmaCh12G011520	Cp4.1LG07g10860	Cucurbita pepo (Zucchini)	cmacpeB206
CmaCh12G011520	MELO3C004426.2	Melon (DHL92) v3.6.1	cmamedB187
CmaCh12G011520	CsaV3_2G003680	Cucumber (Chinese Long) v3	cmacucB0202
CmaCh12G011520	Cla97C02G042790	Watermelon (97103) v2	cmawmbB175
CmaCh12G011520	Bhi06G001543	Wax gourd	cmawgoB0192
CmaCh12G011520	CsGy2G002620	Cucumber (Gy14) v2	cgybcmaB178
CmaCh12G011520	Carg23010	Silver-seed gourd	carcmaB1483
CmaCh12G011520	Carg17443	Silver-seed gourd	carcmaB0355

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh12G011520	CmaCh05G012340	Cucurbita maxima (Rimu)	cmacmaB190

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G011520	Wax gourd	cmawgoB0177
CmaCh12G011520	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G011520	Silver-seed gourd	carcmaB1074