Carg17443 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17443
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Reticulon-like protein
Location	Cucurbita_argyrosperma_scaffold_084 : 135921 .. 140466 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAGCCGGCGGAGAGCGGGGGTGGCAAGGGGGAACGTGGTGGCGGGGTCTGTCTGGGAAAGCAGAATCCGATTCGATGAAGTCCGTGGTGGGATTAGGGTTTTCAATGGAGACGATGAAACCGCCGAATGTAGGGTTCCGGCCGCTACCGTCGGGAGTGCAAGGAGGAAGACGTGGAAATCCGATGAGGGTTTTAACTCGATTCAAATCGCCGAGGAAAAACCAGAATCACCGAGTAGCGGCGATGAACAGAATCGGAAAACCCCGATTCCGTCTCGGAGATTGAGATCCAACAACAGTCCAAACAAACCGGTACGAATAACAGAGAGAAACTCAACGAGGAAGAAAACCGATCATCTCGAAAATCGGCCGTCGGGATTATCAAACCGCCGACGAACACAAACGGAATCAGAAAAATCTCCCCGGAGAAGACGGTTTCATCTCCTCCACCTCAAGATTTCTTCGATGCATTCGAAGAGATTAAGAAAGAAAGCTTCGACGTTAAGGAAATCAATTTTCCAGCCCAAGAAATTTTCCCGGGAAACAAACAGAAATTACAGAGACTAAGTGAGAACAGAGCCTCCCATTTTCATTACAGAATCTCAAAATTTAATTTCCTTTAACTGTTTGATTTCTTGCAGTGGATTTGATAATGTGGAGGGAGTTTTCAAGATCCGCCATGGCATTTGGAGCTGGGAATTTGGTTATAGCCCTCTCTTATTTCATCAAGAACATGAACATCAGGTAAAAACAAAAAAAAAAAAAAAAAAACCCCAAATCCGCCATTGAAGAAGGGTTGTTGAGCTTTGTTTTGTTTTTCGAATTTGCAGCTTTATCAGTATGATTTCGCATATGGGTCTTGTTTATCTGGCTGCCATTTTCGTCCATAGCTCCATTTTTAGCAGGTGCTCGATCAATTTCGTTCTGTTTTGTTTGGCTTAAGCTTGTTCTTAGAAATGATCATGAGTTTATAAACAAAGAATACTCTCTCTATTGGTACGAGACTTCTTGGGAAAGCCCAAAACAAAGCCACGAGAGTTTAGGCTCAAAGTGGACAATATTATTGTGGAGAGTCGTGTTCGTCTAACGAACCTCTGTTTTTGCATTTAATTTTCCCGGGAAAATTACAGGGGAAATGGAAAGGGAATCGATAGTGATGATGAACATTGTGTGGTTGAAGAAGAAGTGATTCGATTGGTTAAAGGGTTTGTTCCTTTGGTGAATGAATTGCTGCAAAATCTCAAGCCTCTGTTCCATGGAGATCCTTCTGCAACTATGAAGGTAATTTTCTTTTCTTTTTTCTTTTTTATTTTTAAAATTAAAAAATATATATACTCCTAAATTTTCTATTTTCTTTACTCAATTACACGTTTTTTCCAACTAAAATTATTTTATTTAAAAAATATTTTTAAATTTTAATAGTATTTTAAATATATTATTGAATTTAAAATATTTCATTAATATCTTTCCATTTTTATTTTTTAAAAAGTTTTTAAAAAAATATACATAAAATTTTATAAATAATATTAACACTATGAACAAAAACGGTCTATCTACACTATATAGATTATTTTCGAACTTTTTAATGTTATTTTTGAAAATTCACGAATAATTTTGAAACGGGTTACTAACGTTAAAAATATTTTTAAATATTTTTAAAAATTGAAGCTTATTATCAATGAAAATTCATGATATTTTTGAAATGTGTTACTAACTTTAAAAATATTTTAAATTTTTTTTTAAAATTGAAGTTTATTATTAATGAAAATTCAAACGTATTACTAACGTTAAAAAGATTTTTAATTTTTTTTTTCAAAATTGAAGTTTATTATTAATGAAAATTCATGCATATTTTTGAAATGGGTTGCTAACGTTAAAAATATTTTTAAATTTTTTTTGAAAATTGAAGTTTATTATTAATGAAAATTCATGCATATTTTTTAAACGTGTTACCAACGTTAAAAATATTTTTAAATATTTTTAAAAATTGAAGCTTATTATTAATGAAAATTCATGCATATTTTTGAAACTTATTACTAACGTTAAAAATATTTTTAAATATTTTTAAAAATTGAAGCTTATTATTAATGAAAATTCATGCATATTTTTGAAACTTATTACTAACGTTAAAAATATTTTTAAATATTTTTAAAAATTGAAGCTTATTATTAATGAAAATTCATGCATATTTTTTAAACTTATTACCAACGTTAAAAATATTTTTAAAAATTGAAGCTTATTATTAATGAAAATTCATGCATATTTTTGAAACTTATTACCAACGTTAAAAATATTTTTAAATATTTTTAAAAATTGAAGCTTATTATTAATGAAAATTCATGCATATTTTTTCAACGTGTTACTACGTTAAAAATATTTAAATTTTTTTAAAAAAAATTGAATTTATTATTAATGAAAATTCATGCATAATTTTGAAACGGGTTACTAATGTTAAAAATATTTTTAATTTTTTTAAAAAATTGAAGCTTATTATTAATAATGAAAATTCAACCGTATTTTAAAAATATTTGTAAAAATTAAACTGCATTTTAAAAATATTTTTATAAGTGTAAGAAAATTTTAAAATATAGTATTCACCATCTTCGTCCAAAATTAATGTTAATGATATTTTAGAACTTTTTTGAAAATTTAAGAATATTTTTATACTGAGATAAAAGTAAAATTTATTGTTATCTTTTACCATTTTTGAAGAGGGTTAAAAATGGGCAATTACGGTAAGAAATATAGAAATATATGGTAAAAAGAAAGTGTAATAAATATTTATTAAAATTTAAAATTGTTTGGTAATTTGCAGATGGGCGTACTGCTGTTCGTGTTGGCAAAGTGGGGCAGCTTCATCACCTTTTGGAATATCCTCCAATGCGGTAAATTTTTCTTTTACCATCTTTTTTTCATCCACCTAATTTCACTTTCTTTTTTTAAAATAAAAATAAGCTTTTAAATATTGAAAGAAATAATTTTGTGTTTTTTTTTTTTTTTTTTTTTGGGTTCTGACAAATGGATGTACGTACTGATTAACTGGCACAGGATTCGTTGCGGTTTTCACCCTCCCCAAATTATTTACCCACGGTAAAAAAACACATCTCCACGGACTTGGAACTTTTCTATCTTTTATTCTTTTTTGGGTTACAATTCAATACGGCCGAGTACAACAAACCACCGTACACCGCTGTCTTTTATCCGTCGATTTGTTTGTGACCCTCTTTTGTTCCCTTCATAAAACGACCACGTTTTAAATTCTAAAATTTCGAAAAGGGAATAAAAATTAAAATTGTTATATACTTTATTTGTCGGTAATTTATTTTCTTCTCTGTAAGTTCTCGTGTCAGTTCTGTCGGATCGGATGATTTGATGTTTGATTCAATCTCAACCCTTCATTTTTCTTTTCTTTTTTTGTGTTTTAATTTTAAAATTAAAAATAAATATTTTATTTTCATCTTTGGATTCTAAAAACTTCAATTTGGTTCGTGACTTATTTTTGTTTTTATGTTTTCATTTGAATCACATGAAACTTTAGCTTTAAATATCTAATTATTCTCTTAGATAGCGTCTACTCCGTTCTTAAATTTTGAAACGGGTTTAGATCCTAAAAGGTGTCTTATTCATCGAACTATCCTTAGGTTAGTAGAAACATAATGACTTCCTAATACGAGGGAGCTACGTGTCTTTCAAGTTGCCACGCGAAAATAGTTTCAGTCTCGGCCAATTTTCGTTCGACCGATGTCGGGTACCATTAGACAGTTCTGAAAAGTTGGTTTGTTTTTTCAATATCTTAATATTCCCTTGGGAAACCGTGCTAGGACTCGAATTTTGAAGAGAAAAGAGCTTATAGTACTATGCTTACGAGCTTGAAATCGATACCTTAATTGGGTTGTTTGGAGCACACATGCGGAAAAATTGATTATTAGTCTTTGCTATATGAACGCCCATTTGCCCTTTTGATCGGGACGATCGAGGTCTTTGTTTATCGACTTTTTGTTTGTCTATGTGTGTTTCTTTACTTTACTCGCGTGGGAGAAAGGAAGAAACAAAAATGAAGAAACTAAATCGTTATCAAACGAAGTTTATTTAGAATATGACGCGGATTCGTGTTGATGTTTGTAAGAGTTCTTTTTTTTTTGTGAATTAGGAGAACATTGGTTGAGGCTTTGTGGGAGTTCTTGGCAGCTGAGTTCCCACAAGAAGGGAATGATTGTTGCTATCTTCCTTATGGTATGGAACTTCTCTTCGATTCTATATCGCGTTTGGGCAGGTAAACCATTTCGAACTGAAATCTTAATCTGTTTCGAGATGTAGATTCGAACGTGTAACGTTATTGAAATGAAGTATGATTTTGCAGCTTTCATAGCGTTTGTGAGCTTTCGCTACTACCGGGAATCATTAGGGAGATATGGTTGGGTTAAAAATGGAGAAGCAGCTCGACATAACGACACGGCTTCGGGTAAGTTCAAAGCTTGAGAGATAATTTTGATCAATTTTGAGGCTCTTTTCCTATGCTTTCTTTTGAGCTAGCTTGAAA

mRNA sequence

ATGGATTTGAGCCGGCGGAGAGCGGGGGTGGCAAGGGGGAACGTGGTGGCGGGGTCTGTCTGGGAAAGCAGAATCCGATTCGATGAAGTCCGTGGTGGGATTAGGGTTTTCAATGGAGACGATGAAACCGCCGAATGTAGGGTTCCGGCCGCTACCGTCGGGAGTGCAAGGAGGAAGACGTGGAAATCCGATGAGGGTTTTAACTCGATTCAAATCGCCGAGGAAAAACCAGAATCACCGAGTAGCGGCGATGAACAGAATCGGAAAACCCCGATTCCGTCTCGGAGATTGAGATCCAACAACAGTCCAAACAAACCGAAACTCAACGAGGAAGAAAACCGATCATCTCGAAAATCGGCCGTCGGGATTATCAAACCGCCGACGAACACAAACGGAATCAGAAAAATCTCCCCGGAGAAGACGGTTTCATCTCCTCCACCTCAAGATTTCTTCGATGCATTCGAAGAGATTAAGAAAGAAAGCTTCGACGTTAAGGAAATCAATTTTCCAGCCCAAGAAATTTTCCCGGGAAACAAACAGAAATTACAGAGACTAATGGATTTGATAATGTGGAGGGAGTTTTCAAGATCCGCCATGGCATTTGGAGCTGGGAATTTGGTTATAGCCCTCTCTTATTTCATCAAGAACATGAACATCAGCTTTATCAGTATGATTTCGCATATGGGGTTTGTTCCTTTGGTGAATGAATTGCTGCAAAATCTCAAGCCTCTGTTCCATGGAGATCCTTCTGCAACTATGAAGATGGGCGTACTGCTGTTCGTGTTGGCAAAGTGGGGCAGCTTCATCACCTTTTGGAATATCCTCCAATGCGGATTCGTTGCGGTTTTCACCCTCCCCAAATTATTTACCCACGGAGAACATTGGTTGAGGCTTTGTGGGAGTTCTTGGCAGCTGAGTTCCCACAAGAAGGGAATGATTGTTGCTATCTTCCTTATGGTATGGAACTTCTCTTCGATTCTATATCGCGTTTGGGCAGCTTTCATAGCGTTTGTGAGCTTTCGCTACTACCGGGAATCATTAGGGAGATATGGTTGGGTTAAAAATGGAGAAGCAGCTCGACATAACGACACGGCTTCGGGTAAGTTCAAAGCTTGAGAGATAATTTTGATCAATTTTGAGGCTCTTTTCCTATGCTTTCTTTTGAGCTAGCTTGAAA

Coding sequence (CDS)

ATGGATTTGAGCCGGCGGAGAGCGGGGGTGGCAAGGGGGAACGTGGTGGCGGGGTCTGTCTGGGAAAGCAGAATCCGATTCGATGAAGTCCGTGGTGGGATTAGGGTTTTCAATGGAGACGATGAAACCGCCGAATGTAGGGTTCCGGCCGCTACCGTCGGGAGTGCAAGGAGGAAGACGTGGAAATCCGATGAGGGTTTTAACTCGATTCAAATCGCCGAGGAAAAACCAGAATCACCGAGTAGCGGCGATGAACAGAATCGGAAAACCCCGATTCCGTCTCGGAGATTGAGATCCAACAACAGTCCAAACAAACCGAAACTCAACGAGGAAGAAAACCGATCATCTCGAAAATCGGCCGTCGGGATTATCAAACCGCCGACGAACACAAACGGAATCAGAAAAATCTCCCCGGAGAAGACGGTTTCATCTCCTCCACCTCAAGATTTCTTCGATGCATTCGAAGAGATTAAGAAAGAAAGCTTCGACGTTAAGGAAATCAATTTTCCAGCCCAAGAAATTTTCCCGGGAAACAAACAGAAATTACAGAGACTAATGGATTTGATAATGTGGAGGGAGTTTTCAAGATCCGCCATGGCATTTGGAGCTGGGAATTTGGTTATAGCCCTCTCTTATTTCATCAAGAACATGAACATCAGCTTTATCAGTATGATTTCGCATATGGGGTTTGTTCCTTTGGTGAATGAATTGCTGCAAAATCTCAAGCCTCTGTTCCATGGAGATCCTTCTGCAACTATGAAGATGGGCGTACTGCTGTTCGTGTTGGCAAAGTGGGGCAGCTTCATCACCTTTTGGAATATCCTCCAATGCGGATTCGTTGCGGTTTTCACCCTCCCCAAATTATTTACCCACGGAGAACATTGGTTGAGGCTTTGTGGGAGTTCTTGGCAGCTGAGTTCCCACAAGAAGGGAATGATTGTTGCTATCTTCCTTATGGTATGGAACTTCTCTTCGATTCTATATCGCGTTTGGGCAGCTTTCATAGCGTTTGTGAGCTTTCGCTACTACCGGGAATCATTAGGGAGATATGGTTGGGTTAAAAATGGAGAAGCAGCTCGACATAACGACACGGCTTCGGGTAAGTTCAAAGCTTGA

Protein sequence

MDLSRRRAGVARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVGSARRKTWKSDEGFNSIQIAEEKPESPSSGDEQNRKTPIPSRRLRSNNSPNKPKLNEEENRSSRKSAVGIIKPPTNTNGIRKISPEKTVSSPPPQDFFDAFEEIKKESFDVKEINFPAQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGFVPLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESLGRYGWVKNGEAARHNDTASGKFKA

Homology

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BLAST of Carg17443 vs. NCBI nr
Match: XP_022938288.1 (reticulon-like protein B21 [Cucurbita moschata])

HSP 1 Score: 676.4 bits (1744), Expect = 5.5e-191
Identity = 355/418 (84.93%), Postives = 358/418 (85.65%), Query Frame = 0


Query: 1   MDLSRRRAGVARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVGSARRKT 60
           MDLSRRRA VARGNVVAGSVWESRIRFDEVRGGIRVFNGDDET ECRVPAATVGSARRKT
Sbjct: 1   MDLSRRRAAVARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETVECRVPAATVGSARRKT 60

Query: 61  WKSDEGFNSIQIAEEKPESPSSGDEQNRKTPIPSRRLRSNNSPNKPKLNEEENRS----- 120
           WKSDEGFNSIQIAEEKPESPSSGDEQNRKTPIPSRRLRSNNSPNKP    E N +     
Sbjct: 61  WKSDEGFNSIQIAEEKPESPSSGDEQNRKTPIPSRRLRSNNSPNKPVRITERNSTRKKID 120

Query: 121 -SRKSAVGIIKPPTNTNGIRKISPEKTVSSPPPQDFFDAFEEIKKESFDVKEINFPAQEI 180
            SRKSAVGI KPPTNTNGIRKISP+KTVSSPPPQDFFDAFEEIK ESFDVKEINFPAQEI
Sbjct: 121 QSRKSAVGITKPPTNTNGIRKISPDKTVSSPPPQDFFDAFEEIKNESFDVKEINFPAQEI 180

Query: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHM------ 240
           FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHM      
Sbjct: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLA 240

Query: 241 -----------------------------------GFVPLVNELLQNLKPLFHGDPSATM 300
                                              GFVP VNELLQNLKPLFHGDPSAT+
Sbjct: 241 AIFVHSSIFSRGNGKGIDSDDEHCVVEEEVIRLVRGFVPFVNELLQNLKPLFHGDPSATL 300

Query: 301 KMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLCGSSWQLSSHKKGMI 360
           KMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLCGSSWQLSSHKKGMI
Sbjct: 301 KMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLCGSSWQLSSHKKGMI 360

Query: 361 VAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESLGRYGWVKNGEAARHNDTASGKFKA 372
           VAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESLGR GWVKNGEAARHNDT SGKFKA
Sbjct: 361 VAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESLGRDGWVKNGEAARHNDTVSGKFKA 418

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BLAST of Carg17443 vs. NCBI nr
Match: XP_022965768.1 (reticulon-like protein B21 [Cucurbita maxima])

HSP 1 Score: 661.4 bits (1705), Expect = 1.8e-186
Identity = 348/417 (83.45%), Postives = 352/417 (84.41%), Query Frame = 0


Query: 1   MDLSRRRAGVARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVGSARRKT 60
           MDLSRRRA VARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVGSARRKT
Sbjct: 1   MDLSRRRAAVARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVGSARRKT 60

Query: 61  WKSDEGFNSIQIAEEKPESPSSGDEQNRKTPIPSRRLRSNNSPNKPKLNEEENRS----- 120
           WKSDE FNSIQIAEEKPESPSSGDE NRKTPIPSRRLRSNNSPNKP    E N +     
Sbjct: 61  WKSDESFNSIQIAEEKPESPSSGDEPNRKTPIPSRRLRSNNSPNKPVRITERNSTRKKTD 120

Query: 121 -SRKSAVGIIKPPTNTNGIRKISPEKTVSSPPPQDFFDAFEEIKKESFDVKEINFPAQEI 180
             RKSAVGI KPP NTNGIRKISPEKTVSSPPPQDFFDAFEEIK ESFDVKEINFP QEI
Sbjct: 121 QPRKSAVGITKPPMNTNGIRKISPEKTVSSPPPQDFFDAFEEIKNESFDVKEINFPGQEI 180

Query: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHM------ 240
           FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHM      
Sbjct: 181 FPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGLVYLA 240

Query: 241 -----------------------------------GFVPLVNELLQNLKPLFHGDPSATM 300
                                              GFVP VNELLQNLKPLFHGDPSATM
Sbjct: 241 AIFVHSSIFSRGNGKGIDSDDEHCVVEEEVIRLVKGFVPFVNELLQNLKPLFHGDPSATM 300

Query: 301 KMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLCGSSWQLSSHKKGMI 360
           KMG+LLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLC SSWQLSSHKKGMI
Sbjct: 301 KMGLLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWLRLCESSWQLSSHKKGMI 360

Query: 361 VAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESLGRYGWVKNGEAARHNDTASGKFK 371
           VAIFLMVWNFSSILYRVWAAFIAFVSFRYY+ESLGR GW+KNGEAARHNDT SGKFK
Sbjct: 361 VAIFLMVWNFSSILYRVWAAFIAFVSFRYYQESLGRDGWLKNGEAARHNDTVSGKFK 417

[Close]

BLAST of Carg17443 vs. NCBI nr
Match: XP_004139257.1 (PREDICTED: reticulon-like protein B18 [Cucumis sativus] >KGN60763.1 hypothetical protein Csa_2G009500 [Cucumis sativus])

HSP 1 Score: 492.3 bits (1266), Expect = 1.5e-135
Identity = 281/441 (63.72%), Postives = 310/441 (70.29%), Query Frame = 0


Query: 1   MDLSRRRAGV-ARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVP--AATVGSAR 60
           MDLSRRRA V A+GNVVAGSVWESRIRFDEVRGGI+VFNGDDE  EC +P  AA+ GS R
Sbjct: 1   MDLSRRRAAVAAKGNVVAGSVWESRIRFDEVRGGIKVFNGDDENVECGIPTTAASAGSGR 60

Query: 61  RKTWKSDEGFNSIQIAEEKPE-SPSSGDEQNRKTPIPSRRLRSNNSPNKP------KLNE 120
           RKTWKSDEGFN I IAEEKPE SPSSGDEQ+RK+P PSRRLRSN+SPNKP      K+  
Sbjct: 61  RKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNSSPNKPVQVSGEKIER 120

Query: 121 EENR----SSRKSAVGIIKPPTNTNGIRKISPEKT-----------VSSPPPQDFFDAF- 180
              R     SRKSAVG+ KPP  TNGI K S EK+           +SS   QDFFDAF 
Sbjct: 121 NSTRKKTDQSRKSAVGLTKPP--TNGIGKTSSEKSFKESNECREKVISSSTSQDFFDAFE 180

Query: 181 EEIKKESFDVKEINFPAQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIA 240
           EEI+KESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNLVI 
Sbjct: 181 EEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNLVII 240

Query: 241 LSYFIKNMNISFISMISHMG---------------------------------------- 300
           LS FIKN+NIS IS+ISHMG                                        
Sbjct: 241 LSCFIKNINISLISLISHMGLLYLTTIFVHSSIFGRRKRIDSNDENLVVEEEDMIRFAKR 300

Query: 301 FVPLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLF 360
            VP VNELLQNLK LF GDPSATMK+GVLLFVLAKWGSFIT WN+L+ GF+ VFTLPKL 
Sbjct: 301 LVPFVNELLQNLKALFRGDPSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFTLPKLI 360

Query: 361 THGEHWLRLCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESLGR 371
           THGEHWL+LCGSSW+L SHK+G+ +AIF +VWNFSS LYRVWAAFI  VSFRYY+ES  R
Sbjct: 361 THGEHWLKLCGSSWKLCSHKRGVFIAIFFLVWNFSSTLYRVWAAFIVLVSFRYYQESPER 420

[Close]

BLAST of Carg17443 vs. NCBI nr
Match: XP_008456496.1 (PREDICTED: reticulon-like protein B21 isoform X1 [Cucumis melo])

HSP 1 Score: 486.1 bits (1250), Expect = 1.1e-133
Identity = 279/444 (62.84%), Postives = 305/444 (68.69%), Query Frame = 0


Query: 1   MDLSRRRAGV-ARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVG----- 60
           MDLSRRRA V ARGNVVAGSVWESRIRFDEVRGGI+VFNGDDE AEC VP          
Sbjct: 1   MDLSRRRAAVAARGNVVAGSVWESRIRFDEVRGGIKVFNGDDENAECGVPTTAASXXXXX 60

Query: 61  SARRKTWKSDEGFNSIQIAEEKPE-SPSSGDEQNRKTPIPSRRLRSNNSPNKP------- 120
           S RRKTWKSDEGFN I IAEEKPE SPSSGDEQ+RK+P PSRRLRSN SPNKP       
Sbjct: 61  SGRRKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNGSPNKPVQVSGEK 120

Query: 121 ---KLNEEENRSSRKSAVGIIKPPTNTNGIRKISPEKT-----------VSSPPPQDFFD 180
                  ++   SRKS VG+ KPP  TNGI K S EK+           +SS   QDFFD
Sbjct: 121 TERNSTRKKTDQSRKSVVGLTKPP--TNGIGKTSSEKSFKELNECKEKVISSSTSQDFFD 180

Query: 181 AF-EEIKKESFDVKEINFPAQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNL 240
           AF EEI+KESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNL
Sbjct: 181 AFEEEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNL 240

Query: 241 VIALSYFIKNMNISFISMISHMGF------------------------------------ 300
           VI LS FIKN+NISFIS+ISHMG                                     
Sbjct: 241 VIILSCFIKNINISFISLISHMGLLYLTAIFVHSSIFGRRKRIDSDDENFVVEEEDMIRF 300

Query: 301 ----VPLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLP 360
               VP VNELLQNLK LF GD SATMK+GVLLFVLAKWGSFIT WN+L+ GF+ VFTLP
Sbjct: 301 AKRSVPFVNELLQNLKALFRGDSSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFTLP 360

Query: 361 KLFTHGEHWLRLCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRES 371
           KL THGEHWL+LCGSSW+L SHK+G+ VAIF +VWNFSS LYRVWAAFI  VSFRYY+ES
Sbjct: 361 KLITHGEHWLKLCGSSWKLCSHKRGVFVAIFFLVWNFSSTLYRVWAAFIVLVSFRYYQES 420

[Close]

BLAST of Carg17443 vs. NCBI nr
Match: XP_022143229.1 (reticulon-like protein B21 isoform X1 [Momordica charantia])

HSP 1 Score: 456.1 bits (1172), Expect = 1.2e-124
Identity = 264/441 (59.86%), Postives = 298/441 (67.57%), Query Frame = 0


Query: 1   MDLSRRRAGVARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATV----GSA 60
           MDLSRRRA  ARG+VVAGSVWESRIRFDEVRGGIRVFNGDD   EC VPAA      G A
Sbjct: 1   MDLSRRRA-AARGSVVAGSVWESRIRFDEVRGGIRVFNGDDGNGECGVPAAVPGGVGGGA 60

Query: 61  RRKTWKSDEGFNSIQIAEEKP-ESPSSGDEQNRKTPIPSRRLRSNNSPNKPKLNEEENRS 120
           RRKTWKS+EGFNSI IAEEKP ESPSSGDEQNRK+PI +R+LRSN SP    +     R+
Sbjct: 61  RRKTWKSEEGFNSILIAEEKPDESPSSGDEQNRKSPILARKLRSNGSPPIKPIQVSGERT 120

Query: 121 SRKSA----------VGIIKPPTNTNGIRKISPEKT----------VSSPPPQDFFDAFE 180
            + SA           G  +P    NGI K SPEK           + S  PQ FFDA E
Sbjct: 121 EKNSARKKTDQTRKSAGGTRP---ANGIGKNSPEKNFEEFNECKEKLISSAPQLFFDAHE 180

Query: 181 -----EIKKESFDVKEINFP-----AQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGN 240
                EI+K+SFDVKEIN P     A E FPGNKQKLQ LMDLIMWR+FSRSA+ FGAGN
Sbjct: 181 KEEEAEIEKKSFDVKEINLPERKKIAAETFPGNKQKLQTLMDLIMWRDFSRSALVFGAGN 240

Query: 241 LVIALSYFIKNMNISFISMISHMG------------------------------------ 300
            +I LS+FIK++NISFIS+ISH+G                                    
Sbjct: 241 FIIILSFFIKDINISFISVISHLGLLFLAAIFLHRSIFGRRKEIGGVDENYVVGEEEMIR 300

Query: 301 ----FVPLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTL 360
                VP VNELLQNLK LF GDPSATMK+ VLLFVLAKWG FIT WN+++CGF A+FTL
Sbjct: 301 FAKRLVPCVNELLQNLKALFRGDPSATMKLAVLLFVLAKWGKFITLWNVVKCGFFALFTL 360

Query: 361 PKLFTHGEHWLRLCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRE 367
           PKL THG+HW++   SSW++ SHKKGM +AIF + WNFSSILYR+WAAFI FVSFRYY+E
Sbjct: 361 PKLITHGDHWMKFLWSSWKICSHKKGMAIAIFFITWNFSSILYRIWAAFIVFVSFRYYQE 420

[Close]

BLAST of Carg17443 vs. TAIR10
Match: AT5G58000.1 (Reticulon family protein)

HSP 1 Score: 159.5 bits (402), Expect = 4.1e-39
Identity = 101/290 (34.83%), Postives = 148/290 (51.03%), Query Frame = 0


Query: 107 KLNEEENRSS-RKSAVGIIKPPTNTNGIRKISPEKTVSSPPPQDFFDAFEEIKKESFDVK 166
           K ++ +NR+S   S+V  I PP        I    +V S PP            + F  +
Sbjct: 170 KFSQFQNRTSPSPSSVRKISPPV-------IKRATSVYSAPPN------STSSTDRFAEQ 229

Query: 167 EINFPAQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMI 226
           E N      F  ++ KLQ L+DL+MWR+ SRS + FG G  +I  S +  ++N SFIS++
Sbjct: 230 EDN------FTHSQSKLQSLVDLVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVV 289

Query: 227 SHMGFV----------------------------------------PLVNELLQNLKPLF 286
           ++MG +                                        P +NE L  L+ LF
Sbjct: 290 AYMGLIYLGLMFVLKSLIHRGMVEEERHKVVGVREEDVKRMLRLIMPYLNESLHQLRALF 349

Query: 287 HGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLF--------THGEHWLR 346
            GDPS T+KMGV+LFVLA+ GS IT WN+ + GF+  FT+PK+F         +G  W+R
Sbjct: 350 SGDPSTTLKMGVVLFVLARCGSSITLWNLAKFGFLGAFTIPKIFISYSTHFSAYGNFWMR 409

Query: 347 LCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESL 348
               +W+  +HKK + +A+F +VWN SS+  RVWAAF+  V+FRYY+  +
Sbjct: 410 RFRDAWESCNHKKAVALALFTLVWNLSSVTARVWAAFMLLVAFRYYQHKM 440

[Close]

BLAST of Carg17443 vs. TAIR10
Match: AT2G20590.1 (Reticulon family protein)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-19
Identity = 62/209 (29.67%), Postives = 93/209 (44.50%), Query Frame = 0


Query: 185 LMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGFV------------- 244
           + DL+MWR+ ++S + FG G L    S F K +N S  S +S++G V             
Sbjct: 168 ISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNTLCQ 227

Query: 245 -------------------------PLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWG 304
                                    P  N  +     LF G+PS T+K+   L + A++G
Sbjct: 228 RKNEDTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLGAEYG 287

Query: 305 SFITFWNILQCGFVAVFTLPKLFTHGEHWL--------RLCGSSWQLSSHKKGMIVAIFL 348
             IT W +   GF   FT+PKL++   H +           G +W + SHKK +  +   
Sbjct: 288 HLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGEAWGVCSHKKILAGSAVT 347

[Close]

BLAST of Carg17443 vs. TAIR10
Match: AT4G28430.1 (Reticulon family protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 47/211 (22.27%), Postives = 85/211 (40.28%), Query Frame = 0


Query: 172 QEIFPGNKQKL-QRLMDLIMWREFSRSAMAFGAGNL-VIALSYFIKNMNISFISMISHMG 231
           Q++  G+ +++ + + DLIMWR+ ++S + FG G +  ++  +  K  N S         
Sbjct: 181 QDVCQGDLERIRENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSXXXXXXXXX 240

Query: 232 --------------------------------------FVPLVNELLQNLKPLFHGDPSA 291
                                                  +P+ N  +     LF G+P+ 
Sbjct: 241 XXXXXXXXXSNTLRQRVTEEARRELKLSEDDVLRIARRMLPITNLAISKTSELFSGEPAM 300

Query: 292 TMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWL--------RLCGSSW 335
           T+K+   + + A++G  IT W +   GF   FT+PKL++     L        R    +W
Sbjct: 301 TLKVAPFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFVEAW 360

[Close]

BLAST of Carg17443 vs. Swiss-Prot
Match: sp|Q56X72|RTNLS_ARATH (Reticulon-like protein B21 OS=Arabidopsis thaliana OX=3702 GN=RTNLB21 PE=2 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 7.4e-38
Identity = 101/290 (34.83%), Postives = 148/290 (51.03%), Query Frame = 0


Query: 107 KLNEEENRSS-RKSAVGIIKPPTNTNGIRKISPEKTVSSPPPQDFFDAFEEIKKESFDVK 166
           K ++ +NR+S   S+V  I PP        I    +V S PP            + F  +
Sbjct: 170 KFSQFQNRTSPSPSSVRKISPPV-------IKRATSVYSAPPN------STSSTDRFAEQ 229

Query: 167 EINFPAQEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMI 226
           E N      F  ++ KLQ L+DL+MWR+ SRS + FG G  +I  S +  ++N SFIS++
Sbjct: 230 EDN------FTHSQSKLQSLVDLVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVV 289

Query: 227 SHMGFV----------------------------------------PLVNELLQNLKPLF 286
           ++MG +                                        P +NE L  L+ LF
Sbjct: 290 AYMGLIYLGLMFVLKSLIHRGMVEEERHKVVGVREEDVKRMLRLIMPYLNESLHQLRALF 349

Query: 287 HGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLF--------THGEHWLR 346
            GDPS T+KMGV+LFVLA+ GS IT WN+ + GF+  FT+PK+F         +G  W+R
Sbjct: 350 SGDPSTTLKMGVVLFVLARCGSSITLWNLAKFGFLGAFTIPKIFISYSTHFSAYGNFWMR 409

Query: 347 LCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESL 348
               +W+  +HKK + +A+F +VWN SS+  RVWAAF+  V+FRYY+  +
Sbjct: 410 RFRDAWESCNHKKAVALALFTLVWNLSSVTARVWAAFMLLVAFRYYQHKM 440

[Close]

BLAST of Carg17443 vs. Swiss-Prot
Match: sp|Q6DR04|RTNLQ_ARATH (Reticulon-like protein B17 OS=Arabidopsis thaliana OX=3702 GN=RTNLB17 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-18
Identity = 62/209 (29.67%), Postives = 93/209 (44.50%), Query Frame = 0


Query: 185 LMDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGFV------------- 244
           + DL+MWR+ ++S + FG G L    S F K +N S  S +S++G V             
Sbjct: 168 ISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNTLCQ 227

Query: 245 -------------------------PLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWG 304
                                    P  N  +     LF G+PS T+K+   L + A++G
Sbjct: 228 RKNEDTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLGAEYG 287

Query: 305 SFITFWNILQCGFVAVFTLPKLFTHGEHWL--------RLCGSSWQLSSHKKGMIVAIFL 348
             IT W +   GF   FT+PKL++   H +           G +W + SHKK +  +   
Sbjct: 288 HLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGEAWGVCSHKKILAGSAVT 347

[Close]

BLAST of Carg17443 vs. Swiss-Prot
Match: sp|Q8LDS3|RTNLR_ARATH (Reticulon-like protein B18 OS=Arabidopsis thaliana OX=3702 GN=RTNLB18 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-07
Identity = 47/211 (22.27%), Postives = 85/211 (40.28%), Query Frame = 0


Query: 172 QEIFPGNKQKL-QRLMDLIMWREFSRSAMAFGAGNL-VIALSYFIKNMNISFISMISHMG 231
           Q++  G+ +++ + + DLIMWR+ ++S + FG G +  ++  +  K  N S         
Sbjct: 181 QDVCQGDLERIRENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSXXXXXXXXX 240

Query: 232 --------------------------------------FVPLVNELLQNLKPLFHGDPSA 291
                                                  +P+ N  +     LF G+P+ 
Sbjct: 241 XXXXXXXXXSNTLRQRVTEEARRELKLSEDDVLRIARRMLPITNLAISKTSELFSGEPAM 300

Query: 292 TMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLFTHGEHWL--------RLCGSSW 335
           T+K+   + + A++G  IT W +   GF   FT+PKL++     L        R    +W
Sbjct: 301 TLKVAPFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFVEAW 360

[Close]

BLAST of Carg17443 vs. TrEMBL
Match: tr|A0A0A0LG57|A0A0A0LG57_CUCSA (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G009500 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 9.7e-136
Identity = 281/441 (63.72%), Postives = 310/441 (70.29%), Query Frame = 0


Query: 1   MDLSRRRAGV-ARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVP--AATVGSAR 60
           MDLSRRRA V A+GNVVAGSVWESRIRFDEVRGGI+VFNGDDE  EC +P  AA+ GS R
Sbjct: 1   MDLSRRRAAVAAKGNVVAGSVWESRIRFDEVRGGIKVFNGDDENVECGIPTTAASAGSGR 60

Query: 61  RKTWKSDEGFNSIQIAEEKPE-SPSSGDEQNRKTPIPSRRLRSNNSPNKP------KLNE 120
           RKTWKSDEGFN I IAEEKPE SPSSGDEQ+RK+P PSRRLRSN+SPNKP      K+  
Sbjct: 61  RKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNSSPNKPVQVSGEKIER 120

Query: 121 EENR----SSRKSAVGIIKPPTNTNGIRKISPEKT-----------VSSPPPQDFFDAF- 180
              R     SRKSAVG+ KPP  TNGI K S EK+           +SS   QDFFDAF 
Sbjct: 121 NSTRKKTDQSRKSAVGLTKPP--TNGIGKTSSEKSFKESNECREKVISSSTSQDFFDAFE 180

Query: 181 EEIKKESFDVKEINFPAQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIA 240
           EEI+KESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNLVI 
Sbjct: 181 EEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNLVII 240

Query: 241 LSYFIKNMNISFISMISHMG---------------------------------------- 300
           LS FIKN+NIS IS+ISHMG                                        
Sbjct: 241 LSCFIKNINISLISLISHMGLLYLTTIFVHSSIFGRRKRIDSNDENLVVEEEDMIRFAKR 300

Query: 301 FVPLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLPKLF 360
            VP VNELLQNLK LF GDPSATMK+GVLLFVLAKWGSFIT WN+L+ GF+ VFTLPKL 
Sbjct: 301 LVPFVNELLQNLKALFRGDPSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFTLPKLI 360

Query: 361 THGEHWLRLCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRESLGR 371
           THGEHWL+LCGSSW+L SHK+G+ +AIF +VWNFSS LYRVWAAFI  VSFRYY+ES  R
Sbjct: 361 THGEHWLKLCGSSWKLCSHKRGVFIAIFFLVWNFSSTLYRVWAAFIVLVSFRYYQESPER 420

[Close]

BLAST of Carg17443 vs. TrEMBL
Match: tr|A0A1S3C3D4|A0A1S3C3D4_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496431 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 7.0e-134
Identity = 279/444 (62.84%), Postives = 305/444 (68.69%), Query Frame = 0


Query: 1   MDLSRRRAGV-ARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVG----- 60
           MDLSRRRA V ARGNVVAGSVWESRIRFDEVRGGI+VFNGDDE AEC VP          
Sbjct: 1   MDLSRRRAAVAARGNVVAGSVWESRIRFDEVRGGIKVFNGDDENAECGVPTTAASXXXXX 60

Query: 61  SARRKTWKSDEGFNSIQIAEEKPE-SPSSGDEQNRKTPIPSRRLRSNNSPNKP------- 120
           S RRKTWKSDEGFN I IAEEKPE SPSSGDEQ+RK+P PSRRLRSN SPNKP       
Sbjct: 61  SGRRKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNGSPNKPVQVSGEK 120

Query: 121 ---KLNEEENRSSRKSAVGIIKPPTNTNGIRKISPEKT-----------VSSPPPQDFFD 180
                  ++   SRKS VG+ KPP  TNGI K S EK+           +SS   QDFFD
Sbjct: 121 TERNSTRKKTDQSRKSVVGLTKPP--TNGIGKTSSEKSFKELNECKEKVISSSTSQDFFD 180

Query: 181 AF-EEIKKESFDVKEINFPAQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNL 240
           AF EEI+KESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNL
Sbjct: 181 AFEEEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNL 240

Query: 241 VIALSYFIKNMNISFISMISHMGF------------------------------------ 300
           VI LS FIKN+NISFIS+ISHMG                                     
Sbjct: 241 VIILSCFIKNINISFISLISHMGLLYLTAIFVHSSIFGRRKRIDSDDENFVVEEEDMIRF 300

Query: 301 ----VPLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLP 360
               VP VNELLQNLK LF GD SATMK+GVLLFVLAKWGSFIT WN+L+ GF+ VFTLP
Sbjct: 301 AKRSVPFVNELLQNLKALFRGDSSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFTLP 360

Query: 361 KLFTHGEHWLRLCGSSWQLSSHKKGMIVAIFLMVWNFSSILYRVWAAFIAFVSFRYYRES 371
           KL THGEHWL+LCGSSW+L SHK+G+ VAIF +VWNFSS LYRVWAAFI  VSFRYY+ES
Sbjct: 361 KLITHGEHWLKLCGSSWKLCSHKRGVFVAIFFLVWNFSSTLYRVWAAFIVLVSFRYYQES 420

[Close]

BLAST of Carg17443 vs. TrEMBL
Match: tr|A0A1S4E0Y2|A0A1S4E0Y2_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496431 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 4.7e-122
Identity = 256/406 (63.05%), Postives = 280/406 (68.97%), Query Frame = 0


Query: 1   MDLSRRRAGV-ARGNVVAGSVWESRIRFDEVRGGIRVFNGDDETAECRVPAATVG----- 60
           MDLSRRRA V ARGNVVAGSVWESRIRFDEVRGGI+VFNGDDE AEC VP          
Sbjct: 1   MDLSRRRAAVAARGNVVAGSVWESRIRFDEVRGGIKVFNGDDENAECGVPTTAASXXXXX 60

Query: 61  SARRKTWKSDEGFNSIQIAEEKPE-SPSSGDEQNRKTPIPSRRLRSNNSPNKP------- 120
           S RRKTWKSDEGFN I IAEEKPE SPSSGDEQ+RK+P PSRRLRSN SPNKP       
Sbjct: 61  SGRRKTWKSDEGFNPILIAEEKPESSPSSGDEQSRKSPTPSRRLRSNGSPNKPVQVSGEK 120

Query: 121 ---KLNEEENRSSRKSAVGIIKPPTNTNGIRKISPEKT-----------VSSPPPQDFFD 180
                  ++   SRKS VG+ KPP  TNGI K S EK+           +SS   QDFFD
Sbjct: 121 TERNSTRKKTDQSRKSVVGLTKPP--TNGIGKTSSEKSFKELNECKEKVISSSTSQDFFD 180

Query: 181 AF-EEIKKESFDVKEINFPAQ-----EIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNL 240
           AF EEI+KESFDVKEIN P +     + FPGNKQKLQ LMDLIMWR+FSRS + FG GNL
Sbjct: 181 AFEEEIEKESFDVKEINLPERKKIIAQTFPGNKQKLQTLMDLIMWRDFSRSGLVFGVGNL 240

Query: 241 VIALSYFIKNMNISFISMISHMGF------------------------------------ 300
           VI LS FIKN+NISFIS+ISHMG                                     
Sbjct: 241 VIILSCFIKNINISFISLISHMGLLYLTAIFVHSSIFGRRKRIDSDDENFVVEEEDMIRF 300

Query: 301 ----VPLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWGSFITFWNILQCGFVAVFTLP 333
               VP VNELLQNLK LF GD SATMK+GVLLFVLAKWGSFIT WN+L+ GF+ VFTLP
Sbjct: 301 AKRSVPFVNELLQNLKALFRGDSSATMKVGVLLFVLAKWGSFITLWNVLKIGFIGVFTLP 360

[Close]

BLAST of Carg17443 vs. TrEMBL
Match: tr|W9SFN6|W9SFN6_9ROSA (Reticulon-like protein OS=Morus notabilis OX=981085 GN=L484_009984 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 158/526 (30.04%), Postives = 221/526 (42.02%), Query Frame = 0


Query: 1   MDLSRRRAGVARGNVVAGSVWESRIRFDEVRGGIRVFNGDD----ETAECRVPAATVGSA 60
           MD+ +RR G+    VVAGSVWESR++ DEVRGGI+VFNG++    +  E         +A
Sbjct: 1   MDVGKRRVGLRSSVVVAGSVWESRMKHDEVRGGIKVFNGEESPEKQDQENVAKPKRPPAA 60

Query: 61  RRKTWKSD--EGF--NSIQIAEEKPESPSSGDEQNRKTPI-------------------- 120
           +RKTWKS+  EGF  N IQIA  K E   + DEQ ++  I                    
Sbjct: 61  KRKTWKSETLEGFEKNPIQIARGKSEEKKNSDEQVKEMSIXXXXXXXXXXXXXXXXXXXX 120

Query: 121 --------PSRRLRSNNS--------PNKPKLNEEENRSSRKSAVGIIKPPTNTNGIRKI 180
                   P   L    S         NK  + E E     K +  I            +
Sbjct: 121 XEIGIRRSPRTELAKPKSDVVKVSVEENKDVVEEIEKSPVEKKSEEIGSESDEACKEFGV 180

Query: 181 SPEKTVSSPPPQDFFDAFEEIKK------------------------------------E 240
             EK +SS                                                    
Sbjct: 181 CEEKVISSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNKFVS 240

Query: 241 SFDVKEINFPAQEI-----FPGNKQKLQRL------------------------------ 300
             +VK++NF  +++     F   ++K + +                              
Sbjct: 241 DCEVKKVNFERRQVKKFHQFQNQQKKAEPISLNVEKQPPVLRRATLHSSFVKGSPTKSPP 300

Query: 301 MDLIMWREFSRSAMAFGAGNLVIALSYFIKNMNISFISMISHMGFV-------------- 360
           MDLIMW++ SRS   FG G   I  S + K++NISFIS++S++G V              
Sbjct: 301 MDLIMWKDISRSVFIFGIGTFTILSSSYTKDLNISFISVMSYLGLVYLAAIFLFTSIVYR 360

Query: 361 -------------------------PLVNELLQNLKPLFHGDPSATMKMGVLLFVLAKWG 362
                                    P +NE L  LK LF GDP+ TMK+ VLLFVLA+ G
Sbjct: 361 GVIDIDYTSYVLGEEEAIWLLKLVLPYLNEFLLKLKALFSGDPATTMKLAVLLFVLARCG 420

[Close]

BLAST of Carg17443 vs. TrEMBL
Match: tr|A0A199UC64|A0A199UC64_MANES (Reticulon-like protein OS=Manihot esculenta OX=3983 GN=MANES_S017800 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.3e-43
Identity = 177/629 (28.14%), Postives = 247/629 (39.27%), Query Frame = 0


Query: 1   MDLSRRRAGVARGNVVAGSVWESRIRFDEVRGGIRVFNGD---DETAECR---VPAATVG 60
           MD+SRRRAGV + +VVAGSVWESR++ DEV+GGI+VFNGD   +ET +     V     G
Sbjct: 1   MDVSRRRAGV-KTSVVAGSVWESRMKLDEVKGGIKVFNGDGNNEETVDSSRKLVKRGQSG 60

Query: 61  SARRKTWKSDEGFNSIQIAEEKPE-SPSSGDEQN-----------RKTPIPSRRLRSN-- 120
           +A+RKTWKS+     IQIA+ K E SP    E+            +K  IP+RR RS+  
Sbjct: 61  TAKRKTWKSESFDGPIQIAKGKTEPSPIKNCEEQCRELSVSADGIKKISIPARRGRSDXX 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXVNTDGNXXXXXXXXXXXXXXREFAESGAQFRKSKSDS 180

Query: 181 -------------------------NSPNKPKLNEEENRSSRKSAVGIIK-PPTNTNGIR 240
                                    + P K   +E E + S  S   I K PP       
Sbjct: 181 EHAANQSGNIELDSGRDSIPMRKAKSEPEKALEDESEFKGSDDSVNRIEKSPPEIEEAGS 240

Query: 241 KISPEKTVSS---------PPPQDFFDAFEE---------------------IKKESFDV 300
           + S ++ +SS          PP    D  ++                     I+K+S +V
Sbjct: 241 EESCKEVISSSEAHGALIKSPPILLVDNQDDNNDEAXXXXXXXXXXXXXXXXIEKKSLEV 300

Query: 301 KEINFPA----------------------------------------------------- 360
           KEI  P                                                      
Sbjct: 301 KEIKIPEXXXXXXXXXXXXXXKPKKLVNEDKRVYQFRNRTAPTSSTVNKQPPPVLRRATI 360

Query: 361 ----------------QEIFPGNKQKLQRLMDLIMWREFSRSAMAFGAGNLVIALSYFIK 369
                            + FP    KLQ L+DL+MWR+ SRSA  FG G  +I  S + K
Sbjct: 361 YQNLSKPTPTPLSNGNHQNFPETHNKLQNLVDLVMWRDISRSAFVFGIGTFIIISSSYTK 420

The following BLAST results are available for this feature:

BLAST of Carg17443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938288.1	5.5e-191	84.93	reticulon-like protein B21 [Cucurbita moschata]	[more]
XP_022965768.1	1.8e-186	83.45	reticulon-like protein B21 [Cucurbita maxima]	[more]
XP_004139257.1	1.5e-135	63.72	PREDICTED: reticulon-like protein B18 [Cucumis sativus] >KGN60763.1 hypothetical...	[more]
XP_008456496.1	1.1e-133	62.84	PREDICTED: reticulon-like protein B21 isoform X1 [Cucumis melo]	[more]
XP_022143229.1	1.2e-124	59.86	reticulon-like protein B21 isoform X1 [Momordica charantia]	[more]

BLAST of Carg17443 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58000.1	4.1e-39	34.83	Reticulon family protein	[more]
AT2G20590.1	1.2e-19	29.67	Reticulon family protein	[more]
AT4G28430.1	1.3e-08	22.27	Reticulon family protein	[more]

BLAST of Carg17443 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q56X72\|RTNLS_ARATH	7.4e-38	34.83	Reticulon-like protein B21 OS=Arabidopsis thaliana OX=3702 GN=RTNLB21 PE=2 SV=2	[more]
sp\|Q6DR04\|RTNLQ_ARATH	2.2e-18	29.67	Reticulon-like protein B17 OS=Arabidopsis thaliana OX=3702 GN=RTNLB17 PE=2 SV=1	[more]
sp\|Q8LDS3\|RTNLR_ARATH	2.3e-07	22.27	Reticulon-like protein B18 OS=Arabidopsis thaliana OX=3702 GN=RTNLB18 PE=2 SV=2	[more]

BLAST of Carg17443 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LG57\|A0A0A0LG57_CUCSA	9.7e-136	63.72	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G009500 PE=4 SV=1	[more]
tr\|A0A1S3C3D4\|A0A1S3C3D4_CUCME	7.0e-134	62.84	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496431 PE=4 SV=1	[more]
tr\|A0A1S4E0Y2\|A0A1S4E0Y2_CUCME	4.7e-122	63.05	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496431 PE=4 SV=1	[more]
tr\|W9SFN6\|W9SFN6_9ROSA	1.5e-43	30.04	Reticulon-like protein OS=Morus notabilis OX=981085 GN=L484_009984 PE=4 SV=1	[more]
tr\|A0A199UC64\|A0A199UC64_MANES	4.3e-43	28.14	Reticulon-like protein OS=Manihot esculenta OX=3983 GN=MANES_S017800 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17443-RA	Carg17443-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 230..291 e-value: 5.2E-10 score: 39.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..144
None	No IPR available	PANTHER	PTHR10994:SF84	RETICULON-LIKE PROTEIN B21	coord: 231..367 coord: 1..107
None	No IPR available	PANTHER	PTHR10994:SF84	RETICULON-LIKE PROTEIN B21	coord: 139..231
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 139..231
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 231..367 coord: 1..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17443	Cla013614	Watermelon (97103) v1	carwmB0242
Carg17443	Csa2G009500	Cucumber (Chinese Long) v2	carcuB0282
Carg17443	MELO3C004426	Melon (DHL92) v3.5.1	carmeB0258
Carg17443	ClCG02G017090	Watermelon (Charleston Gray)	carwcgB0245
Carg17443	CSPI02G02520	Wild cucumber (PI 183967)	carcpiB0286
Carg17443	Cucsa.132850	Cucumber (Gy14) v1	carcgyB0300
Carg17443	CmaCh05G012340	Cucurbita maxima (Rimu)	carcmaB0356
Carg17443	CmaCh12G011520	Cucurbita maxima (Rimu)	carcmaB0355
Carg17443	CmoCh05G012610	Cucurbita moschata (Rifu)	carcmoB0357
Carg17443	CmoCh12G011720	Cucurbita moschata (Rifu)	carcmoB0356
Carg17443	Lsi11G004030	Bottle gourd (USVL1VR-Ls)	carlsiB226
Carg17443	Cp4.1LG11g10190	Cucurbita pepo (Zucchini)	carcpeB0357
Carg17443	Cp4.1LG07g10860	Cucurbita pepo (Zucchini)	carcpeB0362
Carg17443	CsGy2G002620	Cucumber (Gy14) v2	carcgybB0269
Carg17443	MELO3C004426.2	Melon (DHL92) v3.6.1	carmedB0268
Carg17443	CsaV3_2G003680	Cucumber (Chinese Long) v3	carcucB0286
Carg17443	Cla97C02G042790	Watermelon (97103) v2	carwmbB0259
Carg17443	Bhi06G001543	Wax gourd	carwgoB0333

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17443	Carg23010	Silver-seed gourd	carcarB297

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17443	Wax gourd	carwgoB0331
Carg17443	Cucurbita pepo (Zucchini)	carcpeB0361