CmaCh08G002780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G002780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mediator of RNA polymerase II transcription subunit 19
Location	Cma_Chr08 : 1623334 .. 1625581 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGTAAATGCTGATGTATTCAATTTAGTTCCCTCTCTCTCGTGCACTGACGTAGTTTGACTATACATTGATGCGGTTAGTTGAGCTAGAGCATCTCATTCTAATATAATTTTCCTAAGACATGCAGAAGCGTTAGGATTTCAGGGTTGAAACACACAGGAAAAGAAAGTTTTGCTTGATCTGGAATTGTAGTAGGAAATTTGTAGCTCAAAGTTAGAGCTGATTTTAAAACACTTGAGCCTTTGGAACAGGTTTTTCCTTTAGTAAAGGCTCAAGGGTTTGCCTATATTTTTTGGTGCTTTTATTATCTATGTACAAGATTTTATATAAAGCAAATCAGGCCATATTATAATGTTTGGATCTGGAAAACTTAAAGTTTGATTTTTTGGAGGGGATATTAGATCTCTGATACTTTTGGCTACCGTTTTATCCTTGCATTTCATAGAGATAGCATAATGGAGTTTGACCTGTGAGAACCACCAGGCTTCCTTTACCATACAAATTATTATGCTCTTCTTGTTTTGATAATTAGGAGCAACTTAGGAAGTTATTTAACTCCCTACATTGCCATTTCCCCTAAAACATCAAATCAAATGCCACGGGAGTTATTGATTTCCCATAAGCCTCACAACAAGTTCTGAAAAAGATCCTTGCAAAAGTTCTTATTGAAAGGTTGAAAAAATTCCTGCCTGATATGATTTGATTCTTACTTCCAATTGAACTTTTGTAGCTGAAAGACAAATCATAGGTCCCGTTTCAATTGCAAATAAAGCTATTGGTTGAGTGGAGGATATCGTGAAAAGTTATAGTACATGATATATCTGTTTTCCGTTCCATTTTGTTCATTTTCTATCTGTATTGATTATCTGCCACCTAAACTTTTCTATGTATTTTTATTTGTGCCTTTAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAGTCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCTTTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGTAATAAATCTATAACTATAATTGTTAAAATGAGCCACTTTCTTTAGCTTTCTTCCGTCAACTGGAACTTTGATGTTAGGCTTGATTATCAGCATTTCTCGTCCTAGTTCTTTTCTCTGCAAGTGATGGTCCATTTCTTTTTCTGGTTAGGCCGAGAAGGGTGTTCCTACTGTTCCAGGGAAGTCAAAAGGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGGTCGGAAAAATTTTATTCTTTTCCAGCTCCTTTGTAGATACCAGGATAAGATAACAATGAAATAGCTCAGGAGTAGATTGTTATTGACGTTAACATTATGGACTTTTTATTTTGTACCAATTTCTTGTTTGTGGTTCCTCACTTCATGAAGCATATCTTCCACTGAATTTTCATCATTTGACATTGATTATCAACCACCAGCATGTCCCGAGGGCAGGGAATTGAAAAGTTAATTTATATGTGCCATATTTTCTCTACTAAAAGTTAAGGATTAAATAATCTTTTTGTGTTTTACTGCCAAACTAATGTATACATTTATTCTGCATATTGCCCAAACGAGCTGTTTCTTAATTTCCAACTTCATTTAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATCGGCACAAAAAAAATAAGGTAATATGAAGTCAAATTTTCTTTTCAGCTCTAGATTACTTGTATACTGCAAGGAACAATCATCCGGGTTAACTTTTATCTTTGTAATCCATATATTTTTTTTATTTTTCGATTGATTGTTTTCCAACTAAAAGCCTTCTGCATTTAATTTCTGCAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

mRNA sequence

ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAGTCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCTTTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGCCGAGAAGGGTGTTCCTACTGTTCCAGGGAAGTCAAAAGGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATCGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

Coding sequence (CDS)

ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAGTCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCTTTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGCCGAGAAGGGTGTTCCTACTGTTCCAGGGAAGTCAAAAGGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATCGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

Protein sequence

MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSKGESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG

Homology

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BLAST of CmaCh08G002780 vs. Swiss-Prot
Match: MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.0e-84
Identity = 169/223 (75.78%), Postives = 193/223 (86.55%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLI+S S  RETN RIQPFD D L E+FQL +  PVELPPAEKG PT+P KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSAHQDSGADH 180
            ESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKKNKHK++K++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

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BLAST of CmaCh08G002780 vs. Swiss-Prot
Match: MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.1e-68
Identity = 146/216 (67.59%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKS 120
           GEGMQL+QLI + S   R+TNARIQPF  D L EAF+L +T PVELPPAEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KGESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKK 180
           K ESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKK+KHK++K++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

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BLAST of CmaCh08G002780 vs. TrEMBL
Match: A0A0A0K716_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 9.8e-106
Identity = 203/216 (93.98%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQLNQLIQ+ SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPT+PGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            ESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

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BLAST of CmaCh08G002780 vs. TrEMBL
Match: W9QLS7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013773 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.9e-93
Identity = 179/219 (81.74%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLISHYKLL HH+FFCK+SLPL+I+DTHYLHNVVGDTEIRK
Sbjct: 1   MDPEIKKFGRGPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLIQ+ SY R+TNARIQPFD DIL EAFQLRETGP++LPPAEKG+ T+ GKSK
Sbjct: 61  GEGMQLDQLIQNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            E KDK+RKHKKHKDRDK+KD+EHKKHKH HKDRSKDKDKDKKKDKS H DSGADH+KKH
Sbjct: 121 SEFKDKERKHKKHKDRDKEKDKEHKKHKHHHKDRSKDKDKDKKKDKSGHHDSGADHTKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKH+G++DIND+HRHKK+KHK++KI+EMG IKVAG
Sbjct: 181 HEKKRKHEGDEDINDVHRHKKSKHKSSKIDEMGAIKVAG 219

[Close]

BLAST of CmaCh08G002780 vs. TrEMBL
Match: A0A103YLX8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010049 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.8e-92
Identity = 177/218 (81.19%), Postives = 205/218 (94.04%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLIS+YKLLPHHEFFCKKSLPLSISDTHYLHNV GD+EIRK
Sbjct: 1   MDPESKKFGKGPRELTGAVDLISYYKLLPHHEFFCKKSLPLSISDTHYLHNVPGDSEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLIQ+ S+PRETN+RIQPFD DIL EAFQLRET PV+LP +EKG+PT+ GKSK
Sbjct: 61  GEGMQLDQLIQNTSFPRETNSRIQPFDLDILREAFQLRETAPVDLPSSEKGIPTIAGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            E+KDK+RKHKKHKD+D+DKD+EHKKHKHRHKDRSK+KDK+KKKDKS+H DSGA+ SKKH
Sbjct: 121 SEAKDKERKHKKHKDKDRDKDKEHKKHKHRHKDRSKEKDKEKKKDKSSHHDSGAEPSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVA 219
           HEKKRKHDG++D+NDIHRHKK+KHK++KI+EMG IKVA
Sbjct: 181 HEKKRKHDGDEDLNDIHRHKKSKHKSSKIDEMGAIKVA 218

[Close]

BLAST of CmaCh08G002780 vs. TrEMBL
Match: A0A022RKZ9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013493mg PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89
Identity = 174/219 (79.45%), Postives = 199/219 (90.87%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ + KKFG+GPRELTGAVDLISHYKLLPHH+FFCKK LPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MDPDYKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKPLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLIQ     RET+ RIQPFD DIL EAFQLRET PV+LPP+EKG PT+ GKSK
Sbjct: 61  GEGMQLSQLIQDKPLSRETSTRIQPFDLDILREAFQLRETAPVDLPPSEKGTPTIAGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            ESKDK++KHKKHKD+D+DKD+EHKKHKHRHKDRSKDKDK+KKKDKS H +SG DHSK+H
Sbjct: 121 SESKDKEKKHKKHKDKDRDKDKEHKKHKHRHKDRSKDKDKEKKKDKSGHHESGNDHSKRH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKHDG+++ NDIH+HKK+KHK++KI+EMG IKVAG
Sbjct: 181 HEKKRKHDGDEEGNDIHKHKKSKHKSSKIDEMGGIKVAG 219

[Close]

BLAST of CmaCh08G002780 vs. TrEMBL
Match: A0A067LLG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89
Identity = 175/221 (79.19%), Postives = 200/221 (90.50%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG GPRELTGAVDLISHYKLLPHHEFFCK+SLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MDPEGKKFGGGPRELTGAVDLISHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLIQ+ SY RE+N RIQPFD D+L EAFQ +ET PV+LP AEKG PT+  KSK
Sbjct: 61  GEGMQLDQLIQNTSYSRESNIRIQPFDLDVLREAFQFKETTPVDLPSAEKGTPTIAVKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRH--KDRSKDKDKDKKKDKSAHQDSGADHSK 180
            ESKDK+RKHKKHKD+DK+KD+EHKKHKHRH  KDRSKDKDK+KKKD+S H DSG DHSK
Sbjct: 121 SESKDKERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSK 180

Query: 181 KHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           KHHEKKRKHDG++D+ND+H+HKK+KHK++KI+E+G IKVAG
Sbjct: 181 KHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDEIGAIKVAG 221

[Close]

BLAST of CmaCh08G002780 vs. TAIR10
Match: AT5G12230.1 (AT5G12230.1 MED19A)

HSP 1 Score: 312.4 bits (799), Expect = 2.2e-85
Identity = 169/223 (75.78%), Postives = 193/223 (86.55%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLI+S S  RETN RIQPFD D L E+FQL +  PVELPPAEKG PT+P KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSAHQDSGADH 180
            ESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKKNKHK++K++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

[Close]

BLAST of CmaCh08G002780 vs. TAIR10
Match: AT5G19480.1 (AT5G19480.1 unknown protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-69
Identity = 146/216 (67.59%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKS 120
           GEGMQL+QLI + S   R+TNARIQPF  D L EAF+L +T PVELPPAEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KGESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKK 180
           K ESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKK+KHK++K++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of CmaCh08G002780 vs. NCBI nr
Match: gi|659092757|ref|XP_008447203.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 207/219 (94.52%), Postives = 215/219 (98.17%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQLNQLIQ+ SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPT+PGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            ESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKKDKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh08G002780 vs. NCBI nr
Match: gi|449462429|ref|XP_004148943.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis sativus])

HSP 1 Score: 396.4 bits (1017), Expect = 3.3e-107
Identity = 206/219 (94.06%), Postives = 215/219 (98.17%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQLNQLIQ+ SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPT+PGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            ESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh08G002780 vs. NCBI nr
Match: gi|700189481|gb|KGN44714.1| (hypothetical protein Csa_7G374560 [Cucumis sativus])

HSP 1 Score: 391.0 bits (1003), Expect = 1.4e-105
Identity = 203/216 (93.98%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQLNQLIQ+ SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPT+PGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            ESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of CmaCh08G002780 vs. NCBI nr
Match: gi|703078009|ref|XP_010090751.1| (hypothetical protein L484_013773 [Morus notabilis])

HSP 1 Score: 350.1 bits (897), Expect = 2.7e-93
Identity = 179/219 (81.74%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLISHYKLL HH+FFCK+SLPL+I+DTHYLHNVVGDTEIRK
Sbjct: 1   MDPEIKKFGRGPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLIQ+ SY R+TNARIQPFD DIL EAFQLRETGP++LPPAEKG+ T+ GKSK
Sbjct: 61  GEGMQLDQLIQNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            E KDK+RKHKKHKDRDK+KD+EHKKHKH HKDRSKDKDKDKKKDKS H DSGADH+KKH
Sbjct: 121 SEFKDKERKHKKHKDRDKEKDKEHKKHKHHHKDRSKDKDKDKKKDKSGHHDSGADHTKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKH+G++DIND+HRHKK+KHK++KI+EMG IKVAG
Sbjct: 181 HEKKRKHEGDEDINDVHRHKKSKHKSSKIDEMGAIKVAG 219

[Close]

BLAST of CmaCh08G002780 vs. NCBI nr
Match: gi|976928612|gb|KVI11539.1| (hypothetical protein Ccrd_010049 [Cynara cardunculus var. scolymus])

HSP 1 Score: 346.3 bits (887), Expect = 4.0e-92
Identity = 177/218 (81.19%), Postives = 205/218 (94.04%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLIS+YKLLPHHEFFCKKSLPLSISDTHYLHNV GD+EIRK
Sbjct: 1   MDPESKKFGKGPRELTGAVDLISYYKLLPHHEFFCKKSLPLSISDTHYLHNVPGDSEIRK 60

Query: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120
           GEGMQL+QLIQ+ S+PRETN+RIQPFD DIL EAFQLRET PV+LP +EKG+PT+ GKSK
Sbjct: 61  GEGMQLDQLIQNTSFPRETNSRIQPFDLDILREAFQLRETAPVDLPSSEKGIPTIAGKSK 120

Query: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
            E+KDK+RKHKKHKD+D+DKD+EHKKHKHRHKDRSK+KDK+KKKDKS+H DSGA+ SKKH
Sbjct: 121 SEAKDKERKHKKHKDKDRDKDKEHKKHKHRHKDRSKEKDKEKKKDKSSHHDSGAEPSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVA 219
           HEKKRKHDG++D+NDIHRHKK+KHK++KI+EMG IKVA
Sbjct: 181 HEKKRKHDGDEDLNDIHRHKKSKHKSSKIDEMGAIKVA 218

The following BLAST results are available for this feature:

BLAST of CmaCh08G002780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD19A_ARATH	4.0e-84	75.78	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
MD19B_ARATH	3.1e-68	67.59	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of CmaCh08G002780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K716_CUCSA	9.8e-106	93.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1	[more]
W9QLS7_9ROSA	1.9e-93	81.74	Uncharacterized protein OS=Morus notabilis GN=L484_013773 PE=4 SV=1	[more]
A0A103YLX8_CYNCS	2.8e-92	81.19	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010049 PE=4 ...	[more]
A0A022RKZ9_ERYGU	1.3e-89	79.45	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013493mg PE=4 SV=1	[more]
A0A067LLG0_JATCU	1.3e-89	79.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1	[more]

BLAST of CmaCh08G002780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12230.1	2.2e-85	75.78	MED19A	[more]
AT5G19480.1	1.7e-69	67.59	unknown protein	[more]

BLAST of CmaCh08G002780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092757\|ref\|XP_008447203.1\|	1.1e-107	94.52	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
gi\|449462429\|ref\|XP_004148943.1\|	3.3e-107	94.06	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
gi\|700189481\|gb\|KGN44714.1\|	1.4e-105	93.98	hypothetical protein Csa_7G374560 [Cucumis sativus]	[more]
gi\|703078009\|ref\|XP_010090751.1\|	2.7e-93	81.74	hypothetical protein L484_013773 [Morus notabilis]	[more]
gi\|976928612\|gb\|KVI11539.1\|	4.0e-92	81.19	hypothetical protein Ccrd_010049 [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G002780.1	CmaCh08G002780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 6..217 score: 7.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G002780	Cucsa.388280	Cucumber (Gy14) v1	cgycmaB1079
CmaCh08G002780	Cla014850	Watermelon (97103) v1	cmawmB856
CmaCh08G002780	Csa7G374560	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G002780	MELO3C012715	Melon (DHL92) v3.5.1	cmameB834
CmaCh08G002780	ClCG09G007970	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G002780	CSPI07G15350	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G002780	CmoCh17G012940	Cucurbita moschata (Rifu)	cmacmoB888
CmaCh08G002780	CmoCh08G002770	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G002780	Lsi02G021870	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G002780	Cp4.1LG12g10470	Cucurbita pepo (Zucchini)	cmacpeB896
CmaCh08G002780	Cp4.1LG17g05980	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G002780	MELO3C012715.2	Melon (DHL92) v3.6.1	cmamedB933
CmaCh08G002780	Cla97C09G170580	Watermelon (97103) v2	cmawmbB940
CmaCh08G002780	Bhi09G000995	Wax gourd	cmawgoB1130
CmaCh08G002780	Carg11506	Silver-seed gourd	carcmaB0021
CmaCh08G002780	Carg05104	Silver-seed gourd	carcmaB0112

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G002780	CmaCh17G013270	Cucurbita maxima (Rimu)	cmacmaB374

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G002780	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G002780	Cucumber (Gy14) v2	cgybcmaB973