Cp4.1LG17g05980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g05980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMediator of RNA polymerase II transcription subunit 19
LocationCp4.1LG17 : 7003138 .. 7009176 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACCAAACGTATTAAAAGTCCACTGTACGGTCCATTTGTAGATGTGGCAAAGGGTTATTCGTAGTATTATTCAGTGCCCCCTCTTCTCTTCTCTTCTCTTCCCCGATCTCAATTTCCTCTCTTCCCCTCTCTCTCTCTCTCTCTCCGCTGTTCCCGGCCACCGGAGCTACTTCTTCACTCTCCTCACACCCCATTCTCCACCCCCTTTTCCCCTCAATTTCATCTCATTCTTCGATTCGATTCCCACAACCTCTGTTTCTCGATCGCTTTCTCCATCTCTTACCGTTTTCCGGCGCCTCTTTGCTCTTCTTTTCCACCCTTCGCCGCCGAGGTTCGTTTTTCGTTTTTTCCGTTTCTGGAATGGATTCCTTTCGAGTTGTTTTTGGGTTTGGGCACTGCCTTCCCCTTCCGGCCCCGGGGTTTTCAGTTCTGTGATTTTGATTGGTGTGTTTAGGGTTTCTTGCTTCCAGTCCTGTGGGTTTTGTTGCTCGAGCTGAATTGGGTGCTTTGAATTTTGCTTTGGTTTCTGGGCTTTTGGGTTCTCGTAGAATTTTGAGAGGAGGCGTTTTTTGAGGGATTGGAATTGGGGTTCTTCTGAAATTGTGTGTCCTGCTTGTTTCATTCTTGTGTTTGAGTTTAGATGGGGTTCTTGTTTTCGTTTGGACGAGAATGGTTTTAGCATGCTCAATATAGGATTGGGCTAATTTCTGTTTTGTCTTCCCAGTTCAATTCTTTTTAAATTTTTAACCAGTGGTTCTCTTAGGTAATGGTTTTTAGATAGATTGTACGACTCAAGTTTTCTTGTGTATAGTATTGGTTATGTGCATGATTTGCTGAAAAACTCACCAAATGTTCGAATTGGGCTAGAGGTTTCTTGATCTTAGAATTGTTCTAGCTCAATTACTCCTCCAAGTTCTATATAAATTTATTTTCTCTTTCTGAATCATTAAGTGATAACACACCATACATGTAACTATGTAGCTCCGTTATATTGTCTGTTCTATGAGTTTGTCTAATGGAGTTATGCACGTCTATGCTTTATTTCCTTGTTTGATAAGTACTTAGGAAAGCCCAAAAAGTGGTTTGTGTTGTTTTTTTTTTTTATCATTCGATAGGATAGAGGAAAATTACGTTGATTGTCTTGGAGTTGTAATTTCACTACCCTTTTGGTTTTTATGATTGCAGTTATAATGTGACATTGTTCCAAGGAAGTGTGATACATGGAATCTGAAGATAAGAAGTTTGGCCAAGGTAAATGCTGATGTATTCAATTTAGTTCCCTCTCTCTCGTGCACTGACGTAGTTTGACTATACATTGATGTGGTTCGTTGAGCTAGAGTATCTCATTCTATATAATTTTCCTAAGACATGCAGAAGCGTTAGGATTTCAGGGTCGAAACACACAGTAAAAGAAAGTTTTGCTTGATCTGGAATTGTAGTAGGAAATTTGTAGCTCAAATTTAGAGCTGATTTTAAAACACTCGAGCCTTCGGAAGAGGGGTTTCCTTTAGTAAAGGCTCAAGGGTTTGCCTATACTTTTTGGTGCTTTTATTATCTATGTACAAGATTTTAAAAGCAAATCAGGCCATATTATAATGCTTGGATTTGGAAATCTTAAATTTTGATTTTTTGGAGGGGTTATTAGATCTCTGATACTTTTGGCTACCGTTTTATCCTTGCATTTCATAGAGATAGCATAATGGAGTTTGACCCATGAGAACCACCAGACTTCCCTTACCATACAAATCATTATGCTCTTCTTGTTTTGATAATGTAGGAGCAACTTAGGAAGTTATTTAACTTCCTACATTGCCATTTCCCCTAAAACATCAAATTAAATGCCACAGGAGTTATTGATTTCCCATAAGCCTCACAACAAGTTCTGGAAAAAATCCTTGCAAAAGTTCTTATTGAAAGGTTGAAAAAATTCCTACCTGATATGATTAGATTCTTACTTCCAATTGAACTTTTGTAGCTGAAAGACAAATCATAGGTCCTGTTTCAATTGCAAATAAAGCTATTGGTTGAGTGGAGGATATCGTGAAAAGTTGTAGTACATGATATATCTGTTTTCCGTTCCATTTTGTTCATCTTCGATCTGTATTGATTATCTGCCACCTAAGTTTTTCTATGTATTTTTATTTGTGCCTTTAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGGGACACAGAAATTAGAAAAGGGGAAGGGATGCAATTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGTAAGAAATCTATAACTATAATTGTTAAAATGAGCCATTTTCTTTAGCTTTCTTCCGTCAGCTGGAACTTTGATGTTAGGCTTGATTATCAGCATTTCTAGTCCTAGTTATTTTCTCTGCAAGTGATGGTCCATTTCTTTTTCTTTGGTTAGGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGGAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAGGACAAAAGTACACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGGTCGGAAAACCTTTATTCTTTTCCAGCTCCTTTGTAAATACCAGGATTAGATAACAATGAAATAGCTCAGGAGTAGATTGTTATTGACGTTAACATTATGGACTTTTTATTTTGTACCAATTTCTTGTTTGTGGTTCCTCACTTCATAAAGCATATCCCTTCCGCTGAATTTTCATCATTTGACATTGATTATCAACCACCAGCATGTCCCGAGGGCAGGGAATTGTAAAGTTAATTTATATGTACCATATTTTCTCTACTAAAAGTTAAGGGTTAAGTAATATTTTTGTGTTTTACTGCCAAACTAATATACATTTATTGTGCATATTGCCCAAACTAGCTGTTTCTTAATTTCTAACTTCATTTAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAATAAGGTAATATGAAGTCAAAATTTCTTTTCAGTTCTAGATTACTTGCATACTGCTAAGAACAATCATCGGGTTAACTTTTATCTTTGTAATCCATATTTTTTTTAATTTTTCGATTGATTGTTTTCCAACTAAAAGCCTTCTGCATTTAATTTCTGCAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGACATTGTGGAATAATCTAGGTCATTTATTTCCTCATATGGTTGTTGAAAGATTGCTGGAATTTTCACTTAATGTTGTCAAAAAATACTTGAGGTATATTTATATCTTTCAAGTATATTCTATATTCAATTGTTCTTCATATGATTTCATTTCTTTTTCATTAATGGGTTTTTTTTTTATCTTTCATTGATATTTGAAAAAGTTACGTTATAAACTGTTGCTCCCATGGGGGAGCGTACAGAGGAGTATTGACATCCAATCATCACATAACTTAAAAGAGTAAAATGAAACTGAAACTCCAAAAGTCTACAAAAAGACATCTCAACTATAATTGACTGCATCAGGAGTATAACTTTAAAGTGTGAGAGATTCCATGTACTTTTACCTGTTGTGTTGTGGAAATTAAGTCGTTCTTCTCTAGTTTATTTAGGGTTCCTTAGTTAAGTTTGAAGAAAAAAGTTCTTTTTACATTAGGTTTGCATGTGAGCTTTTTCTTTGGTGGAGTATACTGTACTGGAGCTTAAATTTTGGTTGTGAAATTTATGAGCTTGTGGGATAAAAAGAAGGCAGCGCATCAGTGTGTCTGGTTGTTTCAAACAAGGGGAAGATAGTTCGTTGCAAAAGAAAAAAATGGTCCCAAGGAGTAACAAACAATACTATATTCTTAGGCTTTTACAAGCTCAGAGAGACAAGGAAGAAGGTGGAGGGAAGGAAGGACAGTTTTGAACGAAGTGATGGAAAACATATAATTGTTTTTACATGATTTAGTTTCCGTAGGAATTGGATCTTGTATGCTACAGCTAGGGGTGTGCATGGTTCTATTTGGTCCGATTTTGGAAGGAACTGTTGACCGAACCAAGCCCCAGTTTTTGAAATCTTCGAATGGATTAAACCGAAGAATTTCCTTGTTTTGGTTCAAAACTGAACTAGTTTACTTTTTGTTTCCTTGGTTCGGTTTCAGTTTTAGCGGTCTTTTTTGCATTTTTTCCCCCGGTAAATGGCCTTCCGACCCACAAAGAAATGATCCAGAACGAGAGGAAAGGAAGAGGAAAAATGAGTGAGAGGGATGTTTACTAGTAAATATTAAATTTCATTTATGCGTATGATGTTTACTAGTAAATATTAAATTTCATTTATGCGTATGATGTTTACTAGTAAATACCTTGAGGATTTCTGATTCAAAAGAGTCGAGAACAATTGGATATTGTATCGGTTTAACCATCATTACCACGTGTTCAATGGAAAACAATGGGTGTTAGAATTAAAACCTTCTCTAAGATCTCATTTTTTCTTTTGAACTTCTAAATGAGCTTGGTTTTTTTTTAGTGTTTGGGCCATCTTATGTGTATTTCGACTATTTTCATCATCTCCATCATGATTTTATATTTAAATCTATCTATCTATCTATGCATATACTTGGATTCTAGACTTGCTTAAGCCTGCGACTTGAAATTTGTATCGTATTTGTAGTCTTTCTTTGATTCTGAATTTAGAAATATAATCCATTTTCATAGTCTTGGGTGACTTGGGTAGGTATTGTGTGATTGTCTTTCATCATTATTTTCTTTTCTTGCTTGGGTTGGATTGTGTCTGCTGGCCTAAGGATTGATATTCCCTTTTGATGAAACTTGCAACAAATTAGTAAAGAATAAGAGAAAACATACGGCATGCGTATTAGTTGAATACAAAATCAGAGTCAGCATACATTTCATGTATGAGTAGCAATTCCATTGGTACATGTCAGTCATTTTTGTGTTCTGCAATATTTTAGTGATTCTTGACAAGACTTTGCTCAGTTCGAGTTCTCTTTTGAAGCATTTCCGTTCTTTTCTTTTTATTGATTTCGTTTCGTCGTCTGTAACGGTTTGAACTCCTTAATGCCTGTTGTGATTGCCTGAAATATGCCAAGACTAATTGGGTATAACACTCTGATTTAAGTGTTCATGAAAAATTAGTATCTGAAGGAATTTGGAGTCTGCTGGAAGCAGCAGCTAAGCTAATCCTGTCGAGTCGACTTTTATTTGTAGGGAGCTAAAGCCATCTCAGCTGGTTCCATTTGGTACAATGCATGAGTTAGAGATAGTAGTCTAGCTGAACTGAGCTGAGCTGAGCTTTAATTGTTTTGTCTTCTCATATTTTGGTTTTCCTGTAACCTATTGAGTGAATGATAGCCATTGTTCTTTCTTTCTCCGTGCAGAGTAGCTTCTGATGAGGGTGAATTTACCAGTTTTAGGGGAGATATGTGGAAGCAAATGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGTGGAAATGAACTTTTGTATCATAACAAACAATGGGTCTGATATATAAATATGAGCGATTTGCAGGACTGGTTTCCTCAATTTTCCACATGTAACATTATGTTCTTCTTCTTCTTTTTCTTTTCATTTTCTGGACGTCTTTCGAGTTTTAGTTTGAAGTAGCGTTGCTTCGTGTTCGGTATTTCGAACGGAGGTAGAAGCCTAGAACTTCTCTCTGATCTCTTGTTTTCTTTGTCTGGCCATCTTTTGAGCTAACTGAATTGGTTCCTTAGAGTGT

mRNA sequence

TGACCAAACGTATTAAAAGTCCACTGTACGGTCCATTTGTAGATGTGGCAAAGGGTTATTCGTAGTATTATTCAGTGCCCCCTCTTCTCTTCTCTTCTCTTCCCCGATCTCAATTTCCTCTCTTCCCCTCTCTCTCTCTCTCTCTCCGCTGTTCCCGGCCACCGGAGCTACTTCTTCACTCTCCTCACACCCCATTCTCCACCCCCTTTTCCCCTCAATTTCATCTCATTCTTCGATTCGATTCCCACAACCTCTGTTTCTCGATCGCTTTCTCCATCTCTTACCGTTTTCCGGCGCCTCTTTGCTCTTCTTTTCCACCCTTCGCCGCCGAGTTATAATGTGACATTGTTCCAAGGAAGTGTGATACATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGGGACACAGAAATTAGAAAAGGGGAAGGGATGCAATTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGACATTGTGGAATAATCTAGGTCATTTATTTCCTCATATGGTTGTTGAAAGATTGCTGGAATTTTCACTTAATGTTGTCAAAAAATACTTGAGGGAGCTAAAGCCATCTCAGCTGGTTCCATTTGGTACAATGCATGAGTTAGAGATAGTAGTCTAGCTGAACTGAGCTGAGCTGAGCTTTAATTGTTTTGTCTTCTCATATTTTGGTTTTCCTGTAACCTATTGAGTGAATGATAGCCATTGTTCTTTCTTTCTCCGTGCAGAGTAGCTTCTGATGAGGGTGAATTTACCAGTTTTAGGGGAGATATGTGGAAGCAAATGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGTGGAAATGAACTTTTGTATCATAACAAACAATGGGTCTGATATATAAATATGAGCGATTTGCAGGACTGGTTTCCTCAATTTTCCACATGTAACATTATGTTCTTCTTCTTCTTTTTCTTTTCATTTTCTGGACGTCTTTCGAGTTTTAGTTTGAAGTAGCGTTGCTTCGTGTTCGGTATTTCGAACGGAGGTAGAAGCCTAGAACTTCTCTCTGATCTCTTGTTTTCTTTGTCTGGCCATCTTTTGAGCTAACTGAATTGGTTCCTTAGAGTGT

Coding sequence (CDS)

ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGGGACACAGAAATTAGAAAAGGGGAAGGGATGCAATTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

Protein sequence

MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG
Homology
[Close]
BLAST of Cp4.1LG17g05980 vs. Swiss-Prot
Match: MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-39
Identity = 92/150 (61.33%), Postives = 103/150 (68.67%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPP------------ 120
           GEGMQL+QLI N S   R+TNARIQPF  D L EAF+L +T PVELPP            
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 -------KRKHDGEDDINDIHR-HKKNKHK 130
                   RKH    D  +  R HKK+KHK
Sbjct: 121 KSESKDKDRKHRKHKDKKEKDREHKKHKHK 149

[Close]
BLAST of Cp4.1LG17g05980 vs. Swiss-Prot
Match: MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.3e-39
Identity = 89/151 (58.94%), Postives = 101/151 (66.89%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPP------------- 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PVELPP             
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 ---------KRKHDGEDDINDIHRHKKNKHK 130
                     +KH   D   D   HKK+KHK
Sbjct: 121 SESKDRDRKHKKHKDRDKDKD-REHKKHKHK 149

[Close]
BLAST of Cp4.1LG17g05980 vs. TrEMBL
Match: A0A162APC8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012709 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 115/209 (55.02%), Postives = 130/209 (62.20%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E K FG+GPRELTGAVDLI HYKLLPHHEFFCK+SLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MDQESKNFGRGPRELTGAVDLIYHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPKR----------- 120
           GEGMQL+QLIQ+ SYPRE+N RIQPFD D+L EAFQLRETGPV+LP              
Sbjct: 61  GEGMQLDQLIQSTSYPRESNVRIQPFDIDVLREAFQLRETGPVDLPTSEKGTPTIAGKSR 120

Query: 121 -------------------------------------------------------KHDGE 144
                                                                  KHDG+
Sbjct: 121 SESKDKEKKHKKHKDKDREKDKEHKKHKHRHKDRSKDKDKEKKKDKSSQHHEKKRKHDGD 180

[Close]
BLAST of Cp4.1LG17g05980 vs. TrEMBL
Match: A0A0A0K716_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-53
Identity = 111/151 (73.51%), Postives = 117/151 (77.48%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP-------------- 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP              
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 --------PKRKHDGEDDINDIHRHKKNKHK 130
                     +KH   D   D   HKK+KH+
Sbjct: 121 SESKDKDRKHKKHKDRDKEKD-REHKKHKHR 150

[Close]
BLAST of Cp4.1LG17g05980 vs. TrEMBL
Match: A0A0K9RRB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_037250 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.9e-50
Identity = 112/213 (52.58%), Postives = 130/213 (61.03%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+SE KKFG+GPRELTGAVDLI+HYKLLPHHEFFCKKSLP+SI+DTHYLHNVVGDTEIRK
Sbjct: 1   MDSEGKKFGRGPRELTGAVDLITHYKLLPHHEFFCKKSLPVSIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPK------------ 120
           GEGMQL+QLIQNPSY  + N RI+PFD D L EAF LRET PV+LP +            
Sbjct: 61  GEGMQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSK 120

Query: 121 -------RKHD------------------------------------------------- 144
                  RKH                                                  
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKKRK 180

[Close]
BLAST of Cp4.1LG17g05980 vs. TrEMBL
Match: A0A164Z5H5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018605 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-48
Identity = 107/206 (51.94%), Postives = 127/206 (61.65%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E K FG+GPRE TGAVDLI+ YKLLPHHEFFCK+SLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MDHESKNFGRGPRERTGAVDLINQYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDAEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP-------------- 120
           GEGMQL+QL+Q+ SYPRE+N RIQPFD D+L EAFQL+ETG V LP              
Sbjct: 61  GEGMQLDQLVQSTSYPRESNVRIQPFDIDVLGEAFQLKETGSVYLPTSEKGTPTVAGKSR 120

Query: 121 -----PKRKHD---------------------------------------------GEDD 143
                 +RKH                                              G++D
Sbjct: 121 SESKDKERKHKKHKDKDREKDKEHKKHKHRHKDRSKDKEKKKDKSGLHHEKKRKHDGDED 180

[Close]
BLAST of Cp4.1LG17g05980 vs. TrEMBL
Match: A0A0V0IYH3_SOLCH (Putative mediator of RNA polymerase II transcription subunit 19a-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.1e-48
Identity = 106/215 (49.30%), Postives = 131/215 (60.93%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ ++K+FG+GPRELTGAVDLISH+KLLPH EFFCK+SLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MDPDNKRFGRGPRELTGAVDLISHFKLLPHQEFFCKRSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPKRK---------- 120
           GEGMQL+QLIQ+ S  RET++RIQPFD D+L EAF+LRE  PV+LPP  K          
Sbjct: 61  GEGMQLDQLIQDTSLSRETSSRIQPFDLDVLGEAFRLREAAPVDLPPSEKGIPTVAGKSK 120

Query: 121 ---------------------------------------------HD------------- 144
                                                        HD             
Sbjct: 121 SESKDKEKKHKKHKDKDKEHKKHKHRHKDRSKDKDKDKKRDKSVHHDSGADLSKKHHEKK 180

[Close]
BLAST of Cp4.1LG17g05980 vs. TAIR10
Match: AT5G19480.1 (AT5G19480.1 unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-41
Identity = 92/150 (61.33%), Postives = 103/150 (68.67%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPP------------ 120
           GEGMQL+QLI N S   R+TNARIQPF  D L EAF+L +T PVELPP            
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 -------KRKHDGEDDINDIHR-HKKNKHK 130
                   RKH    D  +  R HKK+KHK
Sbjct: 121 KSESKDKDRKHRKHKDKKEKDREHKKHKHK 149

[Close]
BLAST of Cp4.1LG17g05980 vs. TAIR10
Match: AT5G12230.1 (AT5G12230.1 MED19A)

HSP 1 Score: 162.2 bits (409), Expect = 2.4e-40
Identity = 89/151 (58.94%), Postives = 101/151 (66.89%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPP------------- 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PVELPP             
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 ---------KRKHDGEDDINDIHRHKKNKHK 130
                     +KH   D   D   HKK+KHK
Sbjct: 121 SESKDRDRKHKKHKDRDKDKD-REHKKHKHK 149

[Close]
BLAST of Cp4.1LG17g05980 vs. NCBI nr
Match: gi|1021046172|gb|KZN03953.1| (hypothetical protein DCAR_012709 [Daucus carota subsp. sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 115/209 (55.02%), Postives = 130/209 (62.20%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E K FG+GPRELTGAVDLI HYKLLPHHEFFCK+SLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MDQESKNFGRGPRELTGAVDLIYHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPKR----------- 120
           GEGMQL+QLIQ+ SYPRE+N RIQPFD D+L EAFQLRETGPV+LP              
Sbjct: 61  GEGMQLDQLIQSTSYPRESNVRIQPFDIDVLREAFQLRETGPVDLPTSEKGTPTIAGKSR 120

Query: 121 -------------------------------------------------------KHDGE 144
                                                                  KHDG+
Sbjct: 121 SESKDKEKKHKKHKDKDREKDKEHKKHKHRHKDRSKDKDKEKKKDKSSQHHEKKRKHDGD 180

[Close]
BLAST of Cp4.1LG17g05980 vs. NCBI nr
Match: gi|449462429|ref|XP_004148943.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 3.1e-53
Identity = 111/151 (73.51%), Postives = 117/151 (77.48%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP-------------- 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP              
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 --------PKRKHDGEDDINDIHRHKKNKHK 130
                     +KH   D   D   HKK+KH+
Sbjct: 121 SESKDKDRKHKKHKDRDKEKD-REHKKHKHR 150

[Close]
BLAST of Cp4.1LG17g05980 vs. NCBI nr
Match: gi|700189481|gb|KGN44714.1| (hypothetical protein Csa_7G374560 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 3.1e-53
Identity = 111/151 (73.51%), Postives = 117/151 (77.48%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP-------------- 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP              
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 --------PKRKHDGEDDINDIHRHKKNKHK 130
                     +KH   D   D   HKK+KH+
Sbjct: 121 SESKDKDRKHKKHKDRDKEKD-REHKKHKHR 150

[Close]
BLAST of Cp4.1LG17g05980 vs. NCBI nr
Match: gi|659092757|ref|XP_008447203.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 3.1e-53
Identity = 111/151 (73.51%), Postives = 117/151 (77.48%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP-------------- 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP              
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 --------PKRKHDGEDDINDIHRHKKNKHK 130
                     +KH   D   D   HKK+KH+
Sbjct: 121 SESKDKDRKHKKHKDRDKEKD-REHKKHKHR 150

[Close]
BLAST of Cp4.1LG17g05980 vs. NCBI nr
Match: gi|902231010|gb|KNA22080.1| (hypothetical protein SOVF_037250 [Spinacia oleracea])

HSP 1 Score: 206.1 bits (523), Expect = 4.2e-50
Identity = 112/213 (52.58%), Postives = 130/213 (61.03%), Query Frame = 1 

Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+SE KKFG+GPRELTGAVDLI+HYKLLPHHEFFCKKSLP+SI+DTHYLHNVVGDTEIRK
Sbjct: 1   MDSEGKKFGRGPRELTGAVDLITHYKLLPHHEFFCKKSLPVSIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPK------------ 120
           GEGMQL+QLIQNPSY  + N RI+PFD D L EAF LRET PV+LP +            
Sbjct: 61  GEGMQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSK 120

Query: 121 -------RKHD------------------------------------------------- 144
                  RKH                                                  
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKKRK 180

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g05980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MD19B_ARATH1.5e-3961.33Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ... [more]
MD19A_ARATH4.3e-3958.94Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ... [more]
BLAST of Cp4.1LG17g05980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A162APC8_DAUCA1.3e-5355.02Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012709 PE=4 SV=1[more]
A0A0A0K716_CUCSA2.2e-5373.51Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1[more]
A0A0K9RRB6_SPIOL2.9e-5052.58Uncharacterized protein OS=Spinacia oleracea GN=SOVF_037250 PE=4 SV=1[more]
A0A164Z5H5_DAUCA2.1e-4851.94Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018605 PE=4 SV=1[more]
A0A0V0IYH3_SOLCH6.1e-4849.30Putative mediator of RNA polymerase II transcription subunit 19a-like OS=Solanum... [more]
BLAST of Cp4.1LG17g05980 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19480.18.4e-4161.33 unknown protein[more]
AT5G12230.12.4e-4058.94 MED19A[more]
BLAST of Cp4.1LG17g05980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1021046172|gb|KZN03953.1|1.8e-5355.02hypothetical protein DCAR_012709 [Daucus carota subsp. sativus][more]
gi|449462429|ref|XP_004148943.1|3.1e-5373.51PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis... [more]
gi|700189481|gb|KGN44714.1|3.1e-5373.51hypothetical protein Csa_7G374560 [Cucumis sativus][more]
gi|659092757|ref|XP_008447203.1|3.1e-5373.51PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis... [more]
gi|902231010|gb|KNA22080.1|4.2e-5052.58hypothetical protein SOVF_037250 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: INTERPRO
TermDefinition
IPR019403Mediator_Med19_met
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0016592 mediator complex
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003712 transcription cofactor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g05980.1Cp4.1LG17g05980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019403Mediator complex, subunit Med19, metazoaPFAMPF10278Med19coord: 12..132
score: 1.
NoneNo IPR availablePANTHERPTHR22536LUNG CANCER METASTASIS-RELATED LCMR1 PROTEINcoord: 6..129
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g05980Cucsa.388280Cucumber (Gy14) v1cgycpeB1032
Cp4.1LG17g05980CmaCh17G013270Cucurbita maxima (Rimu)cmacpeB392
Cp4.1LG17g05980CmaCh08G002780Cucurbita maxima (Rimu)cmacpeB917
Cp4.1LG17g05980CmoCh17G012940Cucurbita moschata (Rifu)cmocpeB355
Cp4.1LG17g05980CmoCh08G002770Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g05980Cla014850Watermelon (97103) v1cpewmB311
Cp4.1LG17g05980Csa7G374560Cucumber (Chinese Long) v2cpecuB344
Cp4.1LG17g05980ClCG09G007970Watermelon (Charleston Gray)cpewcgB280
Cp4.1LG17g05980CSPI07G15350Wild cucumber (PI 183967)cpecpiB345
Cp4.1LG17g05980Lsi02G021870Bottle gourd (USVL1VR-Ls)cpelsiB262
Cp4.1LG17g05980CsaV3_7G027100Cucumber (Chinese Long) v3cpecucB0423
Cp4.1LG17g05980Bhi09G000995Wax gourdcpewgoB0416
Cp4.1LG17g05980Carg11506Silver-seed gourdcarcpeB0023
Cp4.1LG17g05980Carg05104Silver-seed gourdcarcpeB0126
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g05980Cp4.1LG12g10470Cucurbita pepo (Zucchini)cpecpeB173
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g05980Cucumber (Gy14) v2cgybcpeB932