Carg11506 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11506
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 19a-like
Location	Cucurbita_argyrosperma_scaffold_083 : 319040 .. 320403 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTTTTATTTGTACCTTCAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGTAAGAAATCTTTAACTAAAGTTGTTAAAATGAGCCACTTTCTTCAGCTTTCTTCCATTAGCTGGAACTTAGATTTCACCAAGGCAACGGGTCGATTATCAGCATTTGTTGTCCTGATTCTTTTCTCTGCAAGTGATGATCCATCCTTTTTTCTTTGGTTAGGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGGTTGGAAAACCTTTACTCTTTTCCTGCTCTTTGTAAATACCAAAATTAGATAACAATGGGATAGTTAAGGAATAGACTGTCATTGGCATTAACGTTATGGACGTTTTCGTATCGCTTTCACTGAACTTTCTTCATTTTACCTAGACTATCAAACCCTTAGCATGCCTTGAGGGCGGGGAAGTTAATTGATCTATACCATATTTTCTCTACTAAAAATTAAGGATTAAGTGGTCTTTTTGTTTTTACTACCAAGTGAGCTGTTTCTTAATTTTTATCTTCACTCAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGGTAATATGAAGTCCATTATTTTTCAGCTGTAGATTGCTTGCTTACTGCAAATAAGGATTACCCAGGCCAACTTATATCTCCTTAATCCATGTTTTGACTTTTCAATTGATTGTTTTCTAACTAAGTCTTCTGCATTTAATTTCTACAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGACATTGTGGCATAATCTAGGTCATTTATTTCCTCGTATGGTTGTAGAAAGATTGGTGGAATTTTCACTTAATGTGTCAAAAAAAATACTTGAGGTATATTTATATCTTTCAA

mRNA sequence

GTATTTTTATTTGTACCTTCAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGACATTGTGGCATAATCTAGGTCATTTATTTCCTCGTATGGTTGTAGAAAGATTGGTGGAATTTTCACTTAATGTGTCAAAAAAAATACTTGAGGTATATTTATATCTTTCAA

Coding sequence (CDS)

GTATTTTTATTTGTACCTTCAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGA

Protein sequence

VFLFVPSGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSRSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG

Homology

[Close]

BLAST of Carg11506 vs. NCBI nr
Match: XP_022953766.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita moschata] >XP_022953767.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita moschata] >XP_022991654.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita maxima] >XP_022991655.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 1.8e-56
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKXXXXXXXXXXXX 127
           QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKXXXXXXXXXXXX
Sbjct: 71  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKXXXXXXXXXXXX 130

Query: 128 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGXXXXXXXXXXXXXXXXX 187
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGXXXXXXXXXXXXXXXXX
Sbjct: 131 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGXXXXXXXXXXXXXXXXX 190

Query: 188 XXXXXXXXXXXXXXKTSKIEEMGVIKVAG 217
           XXXXXXXXXXXXXXKTSKIEEMGVIKVAG
Sbjct: 191 XXXXXXXXXXXXXXKTSKIEEMGVIKVAG 219

[Close]

BLAST of Carg11506 vs. NCBI nr
Match: XP_022953769.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbita moschata] >XP_022991656.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK
Sbjct: 71  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 118

[Close]

BLAST of Carg11506 vs. NCBI nr
Match: XP_023549114.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK
Sbjct: 71  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 118

[Close]

BLAST of Carg11506 vs. NCBI nr
Match: XP_023549111.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549112.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549113.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK
Sbjct: 71  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 118

[Close]

BLAST of Carg11506 vs. NCBI nr
Match: XP_022143547.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordica charantia] >XP_022143548.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordica charantia])

HSP 1 Score: 216.5 bits (550), Expect = 9.1e-53
Identity = 103/108 (95.37%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGD EIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSY RETNARIQPFDQDILI AFQLRETGPVDLPPAEKGV TIPGK
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGK 118

[Close]

BLAST of Carg11506 vs. TAIR10
Match: AT5G12230.1 (MED19A)

HSP 1 Score: 164.5 bits (415), Expect = 7.4e-41
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGD EIRKGEGMQL+QLI
Sbjct: 10  GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRKGEGMQLDQLI 69

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIP 114
           ++ S SRETN RIQPFD D L  +FQL +  PV+LPPAEKG  TIP
Sbjct: 70  ESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIP 115

[Close]

BLAST of Carg11506 vs. TAIR10
Match: AT5G19480.1 (unknown protein)

HSP 1 Score: 157.9 bits (398), Expect = 7.0e-39
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGD EIRKGEGMQL+QLI
Sbjct: 10  GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRKGEGMQLDQLI 69

Query: 68  QNTSY-SRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVAT 112
            N S  SR+TNARIQPF  D L  AF+L +T PV+LPPAEKG  T
Sbjct: 70  PNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPT 114

[Close]

BLAST of Carg11506 vs. Swiss-Prot
Match: sp|Q9FMP0|MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana OX=3702 GN=MED19A PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-39
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGD EIRKGEGMQL+QLI
Sbjct: 10  GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRKGEGMQLDQLI 69

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIP 114
           ++ S SRETN RIQPFD D L  +FQL +  PV+LPPAEKG  TIP
Sbjct: 70  ESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIP 115

[Close]

BLAST of Carg11506 vs. Swiss-Prot
Match: sp|Q6NQD9|MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana OX=3702 GN=MED19B PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGD EIRKGEGMQL+QLI
Sbjct: 10  GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRKGEGMQLDQLI 69

Query: 68  QNTSY-SRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVAT 112
            N S  SR+TNARIQPF  D L  AF+L +T PV+LPPAEKG  T
Sbjct: 70  PNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPT 114

[Close]

BLAST of Carg11506 vs. TrEMBL
Match: tr|A0A1S4DWJ4|A0A1S4DWJ4_CUCME (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=3656 GN=LOC103489709 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 103/108 (95.37%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGK
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGK 118

[Close]

BLAST of Carg11506 vs. TrEMBL
Match: tr|A0A0A0K716|A0A0A0K716_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 103/108 (95.37%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGK
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGK 118

[Close]

BLAST of Carg11506 vs. TrEMBL
Match: tr|W9QLS7|W9QLS7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013773 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLL HHDFFCK+SLPL+I+DTHYLHNVVGD EIRKGEGMQL+QLI
Sbjct: 11  GPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRKGEGMQLDQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSYSR+TNARIQPFD DIL  AFQLRETGP+DLPPAEKG+ TI GK
Sbjct: 71  QNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGK 118

[Close]

BLAST of Carg11506 vs. TrEMBL
Match: tr|A0A2I4HWP2|A0A2I4HWP2_9ROSI (mediator of RNA polymerase II transcription subunit 19a isoform X1 OS=Juglans regia OX=51240 GN=LOC109022193 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHH+FFCK+SLPLSISDTHYLHNVVGD EIRKGEGMQL+QLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRKGEGMQLDQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSYSRE NARIQPFD DIL  AFQLRET PVDLP AEKG+ T+ GK
Sbjct: 71  QNTSYSREPNARIQPFDLDILREAFQLRETAPVDLPLAEKGIPTVAGK 118

[Close]

BLAST of Carg11506 vs. TrEMBL
Match: tr|A0A2I4HWN2|A0A2I4HWN2_9ROSI (mediator of RNA polymerase II transcription subunit 19a isoform X2 OS=Juglans regia OX=51240 GN=LOC109022193 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 8   GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLI 67
           GPRELTGAVDLISHYKLLPHH+FFCK+SLPLSISDTHYLHNVVGD EIRKGEGMQL+QLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRKGEGMQLDQLI 70

Query: 68  QNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGK 116
           QNTSYSRE NARIQPFD DIL  AFQLRET PVDLP AEKG+ T+ GK
Sbjct: 71  QNTSYSREPNARIQPFDLDILREAFQLRETAPVDLPLAEKGIPTVAGK 118

The following BLAST results are available for this feature:

BLAST of Carg11506 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953766.1	1.8e-56	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbi...	[more]
XP_022953769.1	6.7e-56	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbi...	[more]
XP_023549114.1	6.7e-56	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbi...	[more]
XP_023549111.1	6.7e-56	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbi...	[more]
XP_022143547.1	9.1e-53	95.37	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordi...	[more]

BLAST of Carg11506 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12230.1	7.4e-41	72.64	MED19A	[more]
AT5G19480.1	7.0e-39	72.38	unknown protein	[more]

BLAST of Carg11506 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FMP0\|MD19A_ARATH	1.3e-39	72.64	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
sp\|Q6NQD9\|MD19B_ARATH	1.3e-37	72.38	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of Carg11506 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DWJ4\|A0A1S4DWJ4_CUCME	1.7e-52	95.37	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=...	[more]
tr\|A0A0A0K716\|A0A0A0K716_CUCSA	1.7e-52	95.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1	[more]
tr\|W9QLS7\|W9QLS7_9ROSA	2.6e-48	87.04	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013773 PE=4 SV=1	[more]
tr\|A0A2I4HWP2\|A0A2I4HWP2_9ROSI	2.9e-47	87.04	mediator of RNA polymerase II transcription subunit 19a isoform X1 OS=Juglans re...	[more]
tr\|A0A2I4HWN2\|A0A2I4HWN2_9ROSI	2.9e-47	87.04	mediator of RNA polymerase II transcription subunit 19a isoform X2 OS=Juglans re...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR019403	Mediator_Med19_met

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11506-RA	Carg11506-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019403	Mediator complex, subunit Med19, metazoa	PFAM	PF10278	Med19	coord: 6..169 e-value: 1.7E-8 score: 34.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..195
None	No IPR available	PANTHER	PTHR22536:SF2	SUBFAMILY NOT NAMED	coord: 7..202
None	No IPR available	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 7..202

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11506	Cla014850	Watermelon (97103) v1	carwmB0014
Carg11506	Csa7G374560	Cucumber (Chinese Long) v2	carcuB0013
Carg11506	MELO3C012715	Melon (DHL92) v3.5.1	carmeB0014
Carg11506	ClCG09G007970	Watermelon (Charleston Gray)	carwcgB0012
Carg11506	CSPI07G15350	Wild cucumber (PI 183967)	carcpiB0013
Carg11506	Cucsa.388280	Cucumber (Gy14) v1	carcgyB0013
Carg11506	CmaCh17G013270	Cucurbita maxima (Rimu)	carcmaB0020
Carg11506	CmaCh08G002780	Cucurbita maxima (Rimu)	carcmaB0021
Carg11506	CmoCh08G002770	Cucurbita moschata (Rifu)	carcmoB0022
Carg11506	CmoCh17G012940	Cucurbita moschata (Rifu)	carcmoB0021
Carg11506	Lsi02G021870	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11506	Cp4.1LG17g05980	Cucurbita pepo (Zucchini)	carcpeB0023
Carg11506	MELO3C012715.2	Melon (DHL92) v3.6.1	carmedB0015
Carg11506	Cla97C09G170580	Watermelon (97103) v2	carwmbB0012
Carg11506	Bhi09G000995	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11506	Carg05104	Silver-seed gourd	carcarB009

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11506	Cucumber (Gy14) v2	carcgybB0012
Carg11506	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11506	Cucumber (Chinese Long) v3	carcucB0013