Carg11506-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTATTTTTATTTGTACCTTCAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGTAAGAAATCTTTAACTAAAGTTGTTAAAATGAGCCACTTTCTTCAGCTTTCTTCCATTAGCTGGAACTTAGATTTCACCAAGGCAACGGGTCGATTATCAGCATTTGTTGTCCTGATTCTTTTCTCTGCAAGTGATGATCCATCCTTTTTTCTTTGGTTAGGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGGTTGGAAAACCTTTACTCTTTTCCTGCTCTTTGTAAATACCAAAATTAGATAACAATGGGATAGTTAAGGAATAGACTGTCATTGGCATTAACGTTATGGACGTTTTCGTATCGCTTTCACTGAACTTTCTTCATTTTACCTAGACTATCAAACCCTTAGCATGCCTTGAGGGCGGGGAAGTTAATTGATCTATACCATATTTTCTCTACTAAAAATTAAGGATTAAGTGGTCTTTTTGTTTTTACTACCAAGTGAGCTGTTTCTTAATTTTTATCTTCACTCAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGGTAATATGAAGTCCATTATTTTTCAGCTGTAGATTGCTTGCTTACTGCAAATAAGGATTACCCAGGCCAACTTATATCTCCTTAATCCATGTTTTGACTTTTCAATTGATTGTTTTCTAACTAAGTCTTCTGCATTTAATTTCTACAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGACATTGTGGCATAATCTAGGTCATTTATTTCCTCGTATGGTTGTAGAAAGATTGGTGGAATTTTCACTTAATGTGTCAAAAAAAATACTTGAGGTATATTTATATCTTTCAA GTATTTTTATTTGTACCTTCAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGACATTGTGGCATAATCTAGGTCATTTATTTCCTCGTATGGTTGTAGAAAGATTGGTGGAATTTTCACTTAATGTGTCAAAAAAAATACTTGAGGTATATTTATATCTTTCAA GTATTTTTATTTGTACCTTCAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGA VFLFVPSGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSRSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
BLAST of Carg11506-RA vs. NCBI nr
Match: XP_022953766.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita moschata] >XP_022953767.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita moschata] >XP_022991654.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita maxima] >XP_022991655.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 228.8 bits (582), Expect = 1.8e-56 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
BLAST of Carg11506-RA vs. NCBI nr
Match: XP_022953769.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbita moschata] >XP_022991656.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Carg11506-RA vs. NCBI nr
Match: XP_023549114.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Carg11506-RA vs. NCBI nr
Match: XP_023549111.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549112.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549113.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Carg11506-RA vs. NCBI nr
Match: XP_022143547.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordica charantia] >XP_022143548.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordica charantia]) HSP 1 Score: 216.5 bits (550), Expect = 9.1e-53 Identity = 103/108 (95.37%), Postives = 104/108 (96.30%), Query Frame = 0
BLAST of Carg11506-RA vs. TAIR10
Match: AT5G12230.1 (MED19A) HSP 1 Score: 164.5 bits (415), Expect = 7.4e-41 Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 0
BLAST of Carg11506-RA vs. TAIR10
Match: AT5G19480.1 (unknown protein) HSP 1 Score: 157.9 bits (398), Expect = 7.0e-39 Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0
BLAST of Carg11506-RA vs. Swiss-Prot
Match: sp|Q9FMP0|MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana OX=3702 GN=MED19A PE=1 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 1.3e-39 Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 0
BLAST of Carg11506-RA vs. Swiss-Prot
Match: sp|Q6NQD9|MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana OX=3702 GN=MED19B PE=2 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37 Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0
BLAST of Carg11506-RA vs. TrEMBL
Match: tr|A0A1S4DWJ4|A0A1S4DWJ4_CUCME (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=3656 GN=LOC103489709 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52 Identity = 103/108 (95.37%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of Carg11506-RA vs. TrEMBL
Match: tr|A0A0A0K716|A0A0A0K716_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52 Identity = 103/108 (95.37%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of Carg11506-RA vs. TrEMBL
Match: tr|W9QLS7|W9QLS7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013773 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48 Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 0
BLAST of Carg11506-RA vs. TrEMBL
Match: tr|A0A2I4HWP2|A0A2I4HWP2_9ROSI (mediator of RNA polymerase II transcription subunit 19a isoform X1 OS=Juglans regia OX=51240 GN=LOC109022193 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47 Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0
BLAST of Carg11506-RA vs. TrEMBL
Match: tr|A0A2I4HWN2|A0A2I4HWN2_9ROSI (mediator of RNA polymerase II transcription subunit 19a isoform X2 OS=Juglans regia OX=51240 GN=LOC109022193 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47 Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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