CmoCh08G002770 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G002770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mediator of RNA polymerase II transcription subunit 19
Location	Cmo_Chr08 : 1728227 .. 1732625 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGTAAATGCTGATGTATTCAATTTAGTTTCCTCTCTCTCGTGTACTGACGTAGTTTGACTATACATTGATGTGGTTAGTTGAGCTAGAGTATCTCGTTCTAATATAATTTTCCTAAGACATGTAGAAGCGTTAGGATTTCAGGGTTGAAACACACAGGAAAAGAAAGTTTTGCTTGATCTGGGATTGTAGTAGGAAATTTGTAGCTCAAATTTAGAGTTGATTTTAGAACACTTGAGCCTTTGGAACAGGTTTTTCCTTTAGTAAAGGCTCAAGGGTTTGCCTATATTTTTTGGTGCTTTTATTATCTATGTACAAGATTTTATGTAAAGCAAATCAGGCCATATTATAATGTTTGGATTTGGAAAACTTAAAGTTTGATTTTTTTGGAGGGGATATTAGATCTCTGATACTTTTGGCTACCGTTTTATCCTTGCAATAGAGATAGCATAATGGAGTTTGACCCATGAGAACCACCAGACTTCCTTTACCATACAAATTATTATGCTCTTCTTGTTTTGAGAATGTAGGAGCAACTTAGGAAGTTATTTAACTTCCTACATTGCCATTTCCCCTAAAACATCGAATCAAATGCCACGGGAGTTATTGATTTCCCATAAGCCTCACAACAAGTTCCAAAAAAAATCCTTGCAAAAGTTCTTATTGAAAGGTTGAAAAAATTCCTACCTGATATGATTTGATTCTTACTTCCAATTGAACTTTTGTAGCTGAAAGACAAATCATAGGTCCTGTTTCAATTTCAAATAAAGCTATTGGTTGAGTGGAGAATATCGTGAAAAGTTACAGTACATGATATATCTGTTTTTCGTTCCATTTTGTTCATTTTCTATCTCTATTGATTACCTGCCACCTAAATTTTTTGATGTATTTTTATTTGTGCCTTTAGGACCTAGGGAACTGACTGGTGCTGTTGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGTAAGAAATCTATAACTATAATTGTTAAAACGAACCACTTTCTTTAGCTTTCTTCCGTCAGCTGGAACTTTGATGTTAGGCTTGATTATCAGCATTTCTCGTCCTAGTTCTTTTCTCTGCAAGTGATGGTCGATTTCTTTTTCTTTGGTTAGGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGGTCGGAAAATCTTTATTCTTTTCCAGCTCCTTTGTAAATACCAGGATTAGATAACAATGAAATAGCTCAGGAGTAGATTGTTATTGACGTTTACATTATGGACTTTTTATTTTGTACCAATTTCTTGTTTGTGGTTCCTCACTTCATGAAGCATATCCCTTCCACTGAATTTTCATCATTTGACATTGATTATCAACCACCAGCATGTCCCGAGGGCAGGGAATTGAAAAGTTAATTTATATGTGCCATATTTTCTCTACTAAAAGTTAAGGATTAAGTAATCTTTTTGTGTTTTACTGCCAAACTAATATACATTTATTGTGCTTGCCCAAACGAGCTGTTTCTTAATTTCTAACTTCATTTAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAATAAGGTAATATGAAGTCAAATTTTCTTTTCAGCTCTAGATTACTTGCATACTGCAAAGAACAATCATCCGGGTTAACTTTTATCTTTGTAATCCATATATTTTTTTTATTTTTCGATTGATTGTTTTCCAACTAAAACCCTTCTGCATTTAATTTCTGCAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGACATTGTGGAATAATCTAGGTCATTTATTTCCTCATATGGTTGTTGAAAGATTGCTGGAATTTTCACTTAATGTTGTCAAAAAATACTTGAGGTATATTTATATCTTTCAAGTATATTCTATATTCAATTGTTCTTCATATGATTACATTTCTTTTTCATTAATGGGTTTTTTTTATCTTTCATTGATATTTGAAAAGTTACGTTATAAACTGTTGCTCCCATGGGGGAGTATACGGAGGAGTATTGACATCCAATCATCACATAACTTAAATAGTAAAATAGAAACTGAAACTCCAAAAGTCTACAAAAAGACATCTCAACTATAATTGACTGCATCAGGAGTATAACTTTAAAGTGTGAGAGATTCCATGTACTTTTACCTGTTGTGTTGTGGAAATTAAGTCGTTCTTCTCTAGTTTATTTAGCGTTCCTTAGTTAAGTTTGAAGAAAAAAGTTCTTTTTACATTAGGTTTGCATGTGAGCTTTTTCTTTGGTGGAGTATACTGTACTGGAGCTTAAATTTTGGTTGTGAAATTTATGAGCTTGTGGGATAAAAAGAAGGCAGCGCATCAGTGTGTCTGGTTGTTTCAAACAAGGGGAAGATAGTTCGTTGCAAAAGAAGAAAAAGGTCCCAAGGAGTAACAAACAATACTATTTTTTTAGGCTTTTACAAGCTCAGAGAGACAAGGAAGAAGGTGGAGGGAAGGAAGGACAGTTTTGAACGAAGTGATGGAAAACATATAATTGTTTTTACATGATTTAGTTTCCGTAGGAATTGGAACTTGGATGCTACAGCTAGGGGTGTGCATGGTTCTATTTGGTCCGATTTTGGAAGGAACTGTTGACTGAACCAAGCACCAGTTTTTGAAATCTTCGAATGGATTAAACCGAAGTATTTCCTTGTTTTGGTTCAAAACTGGACTAGTTTTCTTTTTGCTTCCTTGGTTCGGTTTCAGTTTTAGCGGTCTTTTTTGCATTTTTTCCCCCAGTAAATGGCCTTCCGACCCACAAAGAAAATGATCCAGAACTAGAGGAAAGGAAGAGGAAAAATGAGTGAGAGGGATGTTTACTAGTAAATACCTTGAGGATTTCTGATTCAAAAGAGTCGAGAACAATTGGATATTGTATCGGTTTAACCATCATTACCACGTGTTCAATGGAAAACAATGGGTGTTAGAATTAAAACCTTCTCTAAGGTATTTCAGAGATGCAAAAGTTTTATTAAGACCTCAAATTTTCTTTTAATCTTTTAAATGAGCTTGGTTTTTTTTTTTTTTTTCATCATCTCCATCATGATTTTATATTTTCATCTATCTATCTATGCATATACTTGGATTCTAGACTTGCTTAAAAAGCCTGCGACTTGAACTTTGTTTCGTATTTATAGTTTTTCTTTGATTATGAATTTAGAAATATAATTCATTTTCATAATCTTGGGTGACTTGGGTAGGTATTGTGTGATTGTCTTTCATCATTATTTTCTTTTCTTGCTTGGGTTGGATTGTGTCTGCTGGCTTAAGGATTGACGAAACTTGCAACAAAATAGTAAAGAATAAGAGAAAACATATGGCATGCGTATTAGTTGAATACAAAATCAGAGTTAGCATACATTTCATTGGTACATGTCAAAAATGTCATTTTTGTGTTCTGCAATATTTTAGTGATTCTTGACAAGACTTTGCTCAGTTCGAGTTCTCTTTTGAAGCATTTCCGTTCTTTTCTTTTTATTGATTTCGTTTCGTCGTCTGTAACGGTTTGAACTCCTTAATGCCTGTTGTGACTGCCTGAAGTATGCTAAGACTAATTGGGTATAACATTCTGATGTTCATGAAAAATTAGTATCTGAAGGAATTTGGGGTCTGCTGGAAGCAGCAGCTAAGCTAATCCTGTCCAGTCAACTTTTATATGTAGGGAGCTAAAGCCATCTCAGTTGGTTCCATTTGGTACAATGCATGAGTTAGAGATAGTAGTCTAGCTGAACTGAGCTGAGCTGAGCTGAGCTTTAATTGTTTTGTCTTCTCATATTCTGGTTTTCCTGTAACCTATTTAGTGAATGATAGCCATTGTTCTTTCTTTCTCCGTGCAGAGAAGCTTCTGATGAGGGTGAATTTACCAGTTTTAGGGGAGATATGTGGAAGCAAATGTAAAAAAAAA

mRNA sequence

ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTTGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGACATTGTGGAATAATCTAGGTCATTTATTTCCTCATATGGTTGTTGAAAGATTGCTGGAATTTTCACTTAATGTTGTCAAAAAATACTTGAGAGAAGCTTCTGATGAGGGTGAATTTACCAGTTTTAGGGGAGATATGTGGAAGCAAATGTAAAAAAAAA

Coding sequence (CDS)

ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTTGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA

Homology

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BLAST of CmoCh08G002770 vs. Swiss-Prot
Match: MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.3e-84
Identity = 170/223 (76.23%), Postives = 194/223 (87.00%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PVELPPAEKG PTIP KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKKNKHK++K++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

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BLAST of CmoCh08G002770 vs. Swiss-Prot
Match: MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.6e-69
Identity = 148/216 (68.52%), Postives = 175/216 (81.02%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKS 120
           GEGMQL+QLI N S   R+TNARIQPF  D L EAF+L +T PVELPPAEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKK+KHK++K++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

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BLAST of CmoCh08G002770 vs. TrEMBL
Match: A0A0A0K716_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 6.8e-107
Identity = 206/216 (95.37%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

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BLAST of CmoCh08G002770 vs. TrEMBL
Match: W9QLS7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013773 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.3e-94
Identity = 182/219 (83.11%), Postives = 205/219 (93.61%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLISHYKLL HH+FFCK+SLPL+I+DTHYLHNVVGDTEIRK
Sbjct: 1   MDPEIKKFGRGPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLIQN SY R+TNARIQPFD DIL EAFQLRETGP++LPPAEKG+ TI GKSK
Sbjct: 61  GEGMQLDQLIQNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SE KDK+RKHKKHKDRDK+KD+EHKKHKH HKDRSKDKDKDKKKDKS H DSGADH+KKH
Sbjct: 121 SEFKDKERKHKKHKDRDKEKDKEHKKHKHHHKDRSKDKDKDKKKDKSGHHDSGADHTKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKH+G++DIND+HRHKK+KHK++KI+EMG IKVAG
Sbjct: 181 HEKKRKHEGDEDINDVHRHKKSKHKSSKIDEMGAIKVAG 219

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BLAST of CmoCh08G002770 vs. TrEMBL
Match: A0A103YLX8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010049 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.9e-93
Identity = 180/218 (82.57%), Postives = 206/218 (94.50%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLIS+YKLLPHHEFFCKKSLPLSISDTHYLHNV GD+EIRK
Sbjct: 1   MDPESKKFGKGPRELTGAVDLISYYKLLPHHEFFCKKSLPLSISDTHYLHNVPGDSEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLIQN S+PRETN+RIQPFD DIL EAFQLRET PV+LP +EKG+PTI GKSK
Sbjct: 61  GEGMQLDQLIQNTSFPRETNSRIQPFDLDILREAFQLRETAPVDLPSSEKGIPTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SE+KDK+RKHKKHKD+D+DKD+EHKKHKHRHKDRSK+KDK+KKKDKS+H DSGA+ SKKH
Sbjct: 121 SEAKDKERKHKKHKDKDRDKDKEHKKHKHRHKDRSKEKDKEKKKDKSSHHDSGAEPSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVA 219
           HEKKRKHDG++D+NDIHRHKK+KHK++KI+EMG IKVA
Sbjct: 181 HEKKRKHDGDEDLNDIHRHKKSKHKSSKIDEMGAIKVA 218

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BLAST of CmoCh08G002770 vs. TrEMBL
Match: A0A061DNR0_THECC (Mediator of RNA polymerase II transcription subunit 19 OS=Theobroma cacao GN=TCM_002578 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 8.9e-91
Identity = 177/221 (80.09%), Postives = 205/221 (92.76%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPREL+GAVDLISHYKLLPHH+FFCK+ LPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MDPEGKKFGKGPRELSGAVDLISHYKLLPHHDFFCKRPLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLIQN S+ R+TNARIQPFD DIL EAFQLRE+ PVELP +EKG+PTI GKSK
Sbjct: 61  GEGMQLDQLIQNTSHNRDTNARIQPFDLDILKEAFQLRESTPVELPSSEKGIPTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRH--KDRSKDKDKDKKKDKSAHQDSGADHSK 180
           SE+KDK+RKHKKHKDRDK+KD+EHK+HKHRH  KDR+KDKDK+KKKD+S H DSGADHSK
Sbjct: 121 SEAKDKERKHKKHKDRDKEKDKEHKRHKHRHKDKDRTKDKDKEKKKDRSGHHDSGADHSK 180

Query: 181 KHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           KHHEKKRKHDG++D+ND+HRHKK+K K++KI+E+G IKVAG
Sbjct: 181 KHHEKKRKHDGDEDLNDVHRHKKSKQKSSKIDEVGAIKVAG 221

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BLAST of CmoCh08G002770 vs. TrEMBL
Match: A0A067LLG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 8.9e-91
Identity = 178/221 (80.54%), Postives = 201/221 (90.95%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG GPRELTGAVDLISHYKLLPHHEFFCK+SLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MDPEGKKFGGGPRELTGAVDLISHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLIQN SY RE+N RIQPFD D+L EAFQ +ET PV+LP AEKG PTI  KSK
Sbjct: 61  GEGMQLDQLIQNTSYSRESNIRIQPFDLDVLREAFQFKETTPVDLPSAEKGTPTIAVKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRH--KDRSKDKDKDKKKDKSAHQDSGADHSK 180
           SESKDK+RKHKKHKD+DK+KD+EHKKHKHRH  KDRSKDKDK+KKKD+S H DSG DHSK
Sbjct: 121 SESKDKERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSK 180

Query: 181 KHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           KHHEKKRKHDG++D+ND+H+HKK+KHK++KI+E+G IKVAG
Sbjct: 181 KHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDEIGAIKVAG 221

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BLAST of CmoCh08G002770 vs. TAIR10
Match: AT5G12230.1 (AT5G12230.1 MED19A)

HSP 1 Score: 313.2 bits (801), Expect = 1.3e-85
Identity = 170/223 (76.23%), Postives = 194/223 (87.00%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PVELPPAEKG PTIP KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKKNKHK++K++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

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BLAST of CmoCh08G002770 vs. TAIR10
Match: AT5G19480.1 (AT5G19480.1 unknown protein)

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-70
Identity = 148/216 (68.52%), Postives = 175/216 (81.02%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKS 120
           GEGMQL+QLI N S   R+TNARIQPF  D L EAF+L +T PVELPPAEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKK+KHK++K++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

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BLAST of CmoCh08G002770 vs. NCBI nr
Match: gi|659092757|ref|XP_008447203.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo])

HSP 1 Score: 401.7 bits (1031), Expect = 7.9e-109
Identity = 210/219 (95.89%), Postives = 216/219 (98.63%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKKDKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmoCh08G002770 vs. NCBI nr
Match: gi|449462429|ref|XP_004148943.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis sativus])

HSP 1 Score: 400.2 bits (1027), Expect = 2.3e-108
Identity = 209/219 (95.43%), Postives = 216/219 (98.63%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmoCh08G002770 vs. NCBI nr
Match: gi|700189481|gb|KGN44714.1| (hypothetical protein Csa_7G374560 [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 9.7e-107
Identity = 206/216 (95.37%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           MESEDKKFG+GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHKA+KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of CmoCh08G002770 vs. NCBI nr
Match: gi|703078009|ref|XP_010090751.1| (hypothetical protein L484_013773 [Morus notabilis])

HSP 1 Score: 354.0 bits (907), Expect = 1.9e-94
Identity = 182/219 (83.11%), Postives = 205/219 (93.61%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLISHYKLL HH+FFCK+SLPL+I+DTHYLHNVVGDTEIRK
Sbjct: 1   MDPEIKKFGRGPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLIQN SY R+TNARIQPFD DIL EAFQLRETGP++LPPAEKG+ TI GKSK
Sbjct: 61  GEGMQLDQLIQNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SE KDK+RKHKKHKDRDK+KD+EHKKHKH HKDRSKDKDKDKKKDKS H DSGADH+KKH
Sbjct: 121 SEFKDKERKHKKHKDRDKEKDKEHKKHKHHHKDRSKDKDKDKKKDKSGHHDSGADHTKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG 220
           HEKKRKH+G++DIND+HRHKK+KHK++KI+EMG IKVAG
Sbjct: 181 HEKKRKHEGDEDINDVHRHKKSKHKSSKIDEMGAIKVAG 219

[Close]

BLAST of CmoCh08G002770 vs. NCBI nr
Match: gi|976928612|gb|KVI11539.1| (hypothetical protein Ccrd_010049 [Cynara cardunculus var. scolymus])

HSP 1 Score: 350.1 bits (897), Expect = 2.7e-93
Identity = 180/218 (82.57%), Postives = 206/218 (94.50%), Query Frame = 1


Query: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60
           M+ E KKFG+GPRELTGAVDLIS+YKLLPHHEFFCKKSLPLSISDTHYLHNV GD+EIRK
Sbjct: 1   MDPESKKFGKGPRELTGAVDLISYYKLLPHHEFFCKKSLPLSISDTHYLHNVPGDSEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120
           GEGMQL+QLIQN S+PRETN+RIQPFD DIL EAFQLRET PV+LP +EKG+PTI GKSK
Sbjct: 61  GEGMQLDQLIQNTSFPRETNSRIQPFDLDILREAFQLRETAPVDLPSSEKGIPTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180
           SE+KDK+RKHKKHKD+D+DKD+EHKKHKHRHKDRSK+KDK+KKKDKS+H DSGA+ SKKH
Sbjct: 121 SEAKDKERKHKKHKDKDRDKDKEHKKHKHRHKDRSKEKDKEKKKDKSSHHDSGAEPSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVA 219
           HEKKRKHDG++D+NDIHRHKK+KHK++KI+EMG IKVA
Sbjct: 181 HEKKRKHDGDEDLNDIHRHKKSKHKSSKIDEMGAIKVA 218

The following BLAST results are available for this feature:

BLAST of CmoCh08G002770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD19A_ARATH	2.3e-84	76.23	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
MD19B_ARATH	3.6e-69	68.52	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of CmoCh08G002770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K716_CUCSA	6.8e-107	95.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1	[more]
W9QLS7_9ROSA	1.3e-94	83.11	Uncharacterized protein OS=Morus notabilis GN=L484_013773 PE=4 SV=1	[more]
A0A103YLX8_CYNCS	1.9e-93	82.57	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010049 PE=4 ...	[more]
A0A061DNR0_THECC	8.9e-91	80.09	Mediator of RNA polymerase II transcription subunit 19 OS=Theobroma cacao GN=TCM...	[more]
A0A067LLG0_JATCU	8.9e-91	80.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1	[more]

BLAST of CmoCh08G002770 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12230.1	1.3e-85	76.23	MED19A	[more]
AT5G19480.1	2.0e-70	68.52	unknown protein	[more]

BLAST of CmoCh08G002770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092757\|ref\|XP_008447203.1\|	7.9e-109	95.89	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
gi\|449462429\|ref\|XP_004148943.1\|	2.3e-108	95.43	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
gi\|700189481\|gb\|KGN44714.1\|	9.7e-107	95.37	hypothetical protein Csa_7G374560 [Cucumis sativus]	[more]
gi\|703078009\|ref\|XP_010090751.1\|	1.9e-94	83.11	hypothetical protein L484_013773 [Morus notabilis]	[more]
gi\|976928612\|gb\|KVI11539.1\|	2.7e-93	82.57	hypothetical protein Ccrd_010049 [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G002770.1	CmoCh08G002770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 1..219 score: 1.7E
None	No IPR available	PANTHER	PTHR22536:SF2	SUBFAMILY NOT NAMED	coord: 1..219 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G002770	Cucsa.388280	Cucumber (Gy14) v1	cgycmoB1078
CmoCh08G002770	CmaCh08G002780	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G002770	CmaCh17G013270	Cucurbita maxima (Rimu)	cmacmoB366
CmoCh08G002770	Cla014850	Watermelon (97103) v1	cmowmB843
CmoCh08G002770	Csa7G374560	Cucumber (Chinese Long) v2	cmocuB900
CmoCh08G002770	MELO3C012715	Melon (DHL92) v3.5.1	cmomeB817
CmoCh08G002770	ClCG09G007970	Watermelon (Charleston Gray)	cmowcgB785
CmoCh08G002770	CSPI07G15350	Wild cucumber (PI 183967)	cmocpiB913
CmoCh08G002770	Lsi02G021870	Bottle gourd (USVL1VR-Ls)	cmolsiB809
CmoCh08G002770	Cp4.1LG12g10470	Cucurbita pepo (Zucchini)	cmocpeB834
CmoCh08G002770	Cp4.1LG17g05980	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G002770	MELO3C012715.2	Melon (DHL92) v3.6.1	cmomedB922
CmoCh08G002770	Cla97C09G170580	Watermelon (97103) v2	cmowmbB916
CmoCh08G002770	Bhi09G000995	Wax gourd	cmowgoB1128
CmoCh08G002770	Carg11506	Silver-seed gourd	carcmoB0022
CmoCh08G002770	Carg05104	Silver-seed gourd	carcmoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G002770	CmoCh17G012940	Cucurbita moschata (Rifu)	cmocmoB311

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G002770	Cucumber (Gy14) v2	cgybcmoB955
CmoCh08G002770	Cucumber (Chinese Long) v3	cmocucB1066