CmoCh17G012940 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012940
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mediator of RNA polymerase II transcription subunit 19
Location	Cmo_Chr17 : 10173044 .. 10175538 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTGAAGATAAGAAGTTTGGCCGAGGTAAATGTCGATATAGTCAATTTAGTCCCCTTTCTCTCGTGCACTGGCATTTAAAGAGTGAGACATAGCTTGGTATATACATTGATGCTTCTATGTTTAGAAATCTATGGATGTTTTTTTGGATGATACGATAGTGTTGTAAATGAACGTGCCCGTTTTGATGGTAACATGCCCTTGGGTCGTCTATTATATACCTAGGAGCTCAATGTTGAATATTTTTTGGTATAGAAGGATCTCTATGTATATCTCTTGACCACTTATATTAGAAATTTATTTCCCTGGGTTTACTCTTTTAATATCTATGACTGTGGTAGTTGAGCTAGAGCATATGATTCTAATACAATTTTTACAAGACATGCAGAGGGCTATAGGATTTATGGGTTGAAACATAGTAAAACCAAGGTTTTGCTAGATCTAGAATTGTGGTTGGAAAACTATAGTTCAAGTTTAGAGCTGAATTAGAACACTTGACCCTTAGATGAGGTTTTACTTTTAAAAGAGTCTTTAAGGTTTGCCTACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGGTGCATGTGCATATATAGAAGACTTATTTATATGTTTTTTTTATAAAAATATTTATCTTGTCACCCGAATTTTCAGTGTATTTTTATTTGTACCTTCAGGGCCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGTAAGAAATCTTTAACTAAAGTTGTTAAAATGAGCCACTTTCTTCAGCTTTCTTCAATTAGCTGGAACTTAGATTTCACCAAGGCAACGGGTCGATTATCAGCATTTGTTGTCCTGATTCTTTTCTCTGCAAGTGATGATCCATCCTTTTTTCTTTGGTTAGGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGGTTGGAAAACCTTTACTCTTTTCCTGCTCTTTGTAAATACCAAAATTAGATAACAATGGGATAGTTAAGGAATAGACTGTCATTGGCATTAACGTTATGGACGTTTTCGTATCCCTTTCACTGAACTTTCTTCATTTTACCTAGACTATCAAACCCTTAGCATGCCTTGAGGGCGGGGAAGTTAATTGATCTATACCATATTTTCTCTACTAAAAATTAAGGATTAAGTGGTCTTTTTGTTTTTACTACCAAGTGAGCTGTTTCTTAATTTTTAACTTCACTCAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGGTAATATGAGGTCCATTATTTTTCAGCTGTAGATTGCTTGCTTACTGCAAATAAGGATTACCCAGGCCAACTTATATCTCCTTAATCCATGTTTTGACTTTTCAATTGATTGTTTTCTAACTAAGCCTTCTGCATTTAATTTCTACAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGA

mRNA sequence

ATGGAATCTGAAGATAAGAAGTTTGGCCGAGGGCCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGA

Coding sequence (CDS)

ATGGAATCTGAAGATAAGAAGTTTGGCCGAGGGCCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAGACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAAGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATCGAAGAAATGGGAGTGATAAAGGTAGCGGGGTGA

Homology

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BLAST of CmoCh17G012940 vs. Swiss-Prot
Match: MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.0e-81
Identity = 163/223 (73.09%), Postives = 192/223 (86.10%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGD EIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLI++ S SRETN RIQPFD D L  +FQL +  PV+LPPAEKG  TIP KS+
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDK----KKEKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDK+KDREHKKHKH+HKDRSKDKDKDK    KK+K+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK+SK++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

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BLAST of CmoCh17G012940 vs. Swiss-Prot
Match: MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.6e-67
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGD EIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSY-SRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKS 120
           GEGMQL+QLI N S  SR+TNARIQPF  D L  AF+L +T PV+LPPAEKG  T   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 RSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKK 180
           +SESKDKDRKH+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK ++K   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

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BLAST of CmoCh17G012940 vs. TrEMBL
Match: A0A0A0K716_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.5e-106
Identity = 208/216 (96.30%), Postives = 209/216 (96.76%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

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BLAST of CmoCh17G012940 vs. TrEMBL
Match: W9QLS7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013773 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.1e-96
Identity = 186/219 (84.93%), Postives = 205/219 (93.61%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           M+ E KKFGRGPRELTGAVDLISHYKLL HHDFFCK+SLPL+I+DTHYLHNVVGD EIRK
Sbjct: 1   MDPEIKKFGRGPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLIQNTSYSR+TNARIQPFD DIL  AFQLRETGP+DLPPAEKG+ TI GKS+
Sbjct: 61  GEGMQLDQLIQNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SE KDK+RKHKKHKDRDKEKD+EHKKHKH HKDRSKDKDKDKKK+KS H DSGADH+KKH
Sbjct: 121 SEFKDKERKHKKHKDRDKEKDKEHKKHKHHHKDRSKDKDKDKKKDKSGHHDSGADHTKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKH+G++DIND+HRHKKSKHK+SKI+EMG IKVAG
Sbjct: 181 HEKKRKHEGDEDINDVHRHKKSKHKSSKIDEMGAIKVAG 219

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BLAST of CmoCh17G012940 vs. TrEMBL
Match: A0A103YLX8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010049 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 3.1e-91
Identity = 177/218 (81.19%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           M+ E KKFG+GPRELTGAVDLIS+YKLLPHH+FFCKKSLPLSISDTHYLHNV GD EIRK
Sbjct: 1   MDPESKKFGKGPRELTGAVDLISYYKLLPHHEFFCKKSLPLSISDTHYLHNVPGDSEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLIQNTS+ RETN+RIQPFD DIL  AFQLRET PVDLP +EKG+ TI GKS+
Sbjct: 61  GEGMQLDQLIQNTSFPRETNSRIQPFDLDILREAFQLRETAPVDLPSSEKGIPTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SE+KDK+RKHKKHKD+D++KD+EHKKHKHRHKDRSK+KDK+KKK+KS+H DSGA+ SKKH
Sbjct: 121 SEAKDKERKHKKHKDKDRDKDKEHKKHKHRHKDRSKEKDKEKKKDKSSHHDSGAEPSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVA 219
           HEKKRKHDG++D+NDIHRHKKSKHK+SKI+EMG IKVA
Sbjct: 181 HEKKRKHDGDEDLNDIHRHKKSKHKSSKIDEMGAIKVA 218

[Close]

BLAST of CmoCh17G012940 vs. TrEMBL
Match: A0A067LLG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.0e-90
Identity = 178/221 (80.54%), Postives = 200/221 (90.50%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           M+ E KKFG GPRELTGAVDLISHYKLLPHH+FFCK+SLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MDPEGKKFGGGPRELTGAVDLISHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLIQNTSYSRE+N RIQPFD D+L  AFQ +ET PVDLP AEKG  TI  KS+
Sbjct: 61  GEGMQLDQLIQNTSYSRESNIRIQPFDLDVLREAFQFKETTPVDLPSAEKGTPTIAVKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRH--KDRSKDKDKDKKKEKSAHQDSGADHSK 180
           SESKDK+RKHKKHKD+DKEKD+EHKKHKHRH  KDRSKDKDK+KKK++S H DSG DHSK
Sbjct: 121 SESKDKERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSK 180

Query: 181 KHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           KHHEKKRKHDG++D+ND+H+HKKSKHK+SKI+E+G IKVAG
Sbjct: 181 KHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDEIGAIKVAG 221

[Close]

BLAST of CmoCh17G012940 vs. TrEMBL
Match: A0A061DNR0_THECC (Mediator of RNA polymerase II transcription subunit 19 OS=Theobroma cacao GN=TCM_002578 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-90
Identity = 176/221 (79.64%), Postives = 204/221 (92.31%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           M+ E KKFG+GPREL+GAVDLISHYKLLPHHDFFCK+ LPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MDPEGKKFGKGPRELSGAVDLISHYKLLPHHDFFCKRPLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLIQNTS++R+TNARIQPFD DIL  AFQLRE+ PV+LP +EKG+ TI GKS+
Sbjct: 61  GEGMQLDQLIQNTSHNRDTNARIQPFDLDILKEAFQLRESTPVELPSSEKGIPTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRH--KDRSKDKDKDKKKEKSAHQDSGADHSK 180
           SE+KDK+RKHKKHKDRDKEKD+EHK+HKHRH  KDR+KDKDK+KKK++S H DSGADHSK
Sbjct: 121 SEAKDKERKHKKHKDRDKEKDKEHKRHKHRHKDKDRTKDKDKEKKKDRSGHHDSGADHSK 180

Query: 181 KHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           KHHEKKRKHDG++D+ND+HRHKKSK K+SKI+E+G IKVAG
Sbjct: 181 KHHEKKRKHDGDEDLNDVHRHKKSKQKSSKIDEVGAIKVAG 221

[Close]

BLAST of CmoCh17G012940 vs. TAIR10
Match: AT5G12230.1 (AT5G12230.1 MED19A)

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-82
Identity = 163/223 (73.09%), Postives = 192/223 (86.10%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGD EIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLI++ S SRETN RIQPFD D L  +FQL +  PV+LPPAEKG  TIP KS+
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDK----KKEKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDK+KDREHKKHKH+HKDRSKDKDKDK    KK+K+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK+SK++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

[Close]

BLAST of CmoCh17G012940 vs. TAIR10
Match: AT5G19480.1 (AT5G19480.1 unknown protein)

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-68
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGD EIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSY-SRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKS 120
           GEGMQL+QLI N S  SR+TNARIQPF  D L  AF+L +T PV+LPPAEKG  T   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 RSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKK 180
           +SESKDKDRKH+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK ++K   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of CmoCh17G012940 vs. NCBI nr
Match: gi|449462429|ref|XP_004148943.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 3.9e-108
Identity = 211/219 (96.35%), Postives = 212/219 (96.80%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmoCh17G012940 vs. NCBI nr
Match: gi|659092757|ref|XP_008447203.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 8.8e-108
Identity = 210/219 (95.89%), Postives = 212/219 (96.80%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmoCh17G012940 vs. NCBI nr
Match: gi|700189481|gb|KGN44714.1| (hypothetical protein Csa_7G374560 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 2.2e-106
Identity = 208/216 (96.30%), Postives = 209/216 (96.76%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of CmoCh17G012940 vs. NCBI nr
Match: gi|703078009|ref|XP_010090751.1| (hypothetical protein L484_013773 [Morus notabilis])

HSP 1 Score: 360.9 bits (925), Expect = 1.6e-96
Identity = 186/219 (84.93%), Postives = 205/219 (93.61%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           M+ E KKFGRGPRELTGAVDLISHYKLL HHDFFCK+SLPL+I+DTHYLHNVVGD EIRK
Sbjct: 1   MDPEIKKFGRGPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLIQNTSYSR+TNARIQPFD DIL  AFQLRETGP+DLPPAEKG+ TI GKS+
Sbjct: 61  GEGMQLDQLIQNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SE KDK+RKHKKHKDRDKEKD+EHKKHKH HKDRSKDKDKDKKK+KS H DSGADH+KKH
Sbjct: 121 SEFKDKERKHKKHKDRDKEKDKEHKKHKHHHKDRSKDKDKDKKKDKSGHHDSGADHTKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKH+G++DIND+HRHKKSKHK+SKI+EMG IKVAG
Sbjct: 181 HEKKRKHEGDEDINDVHRHKKSKHKSSKIDEMGAIKVAG 219

[Close]

BLAST of CmoCh17G012940 vs. NCBI nr
Match: gi|976928612|gb|KVI11539.1| (hypothetical protein Ccrd_010049 [Cynara cardunculus var. scolymus])

HSP 1 Score: 342.8 bits (878), Expect = 4.4e-91
Identity = 177/218 (81.19%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           M+ E KKFG+GPRELTGAVDLIS+YKLLPHH+FFCKKSLPLSISDTHYLHNV GD EIRK
Sbjct: 1   MDPESKKFGKGPRELTGAVDLISYYKLLPHHEFFCKKSLPLSISDTHYLHNVPGDSEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLIQNTS+ RETN+RIQPFD DIL  AFQLRET PVDLP +EKG+ TI GKS+
Sbjct: 61  GEGMQLDQLIQNTSFPRETNSRIQPFDLDILREAFQLRETAPVDLPSSEKGIPTIAGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SE+KDK+RKHKKHKD+D++KD+EHKKHKHRHKDRSK+KDK+KKK+KS+H DSGA+ SKKH
Sbjct: 121 SEAKDKERKHKKHKDKDRDKDKEHKKHKHRHKDRSKEKDKEKKKDKSSHHDSGAEPSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVA 219
           HEKKRKHDG++D+NDIHRHKKSKHK+SKI+EMG IKVA
Sbjct: 181 HEKKRKHDGDEDLNDIHRHKKSKHKSSKIDEMGAIKVA 218

The following BLAST results are available for this feature:

BLAST of CmoCh17G012940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD19A_ARATH	7.0e-81	73.09	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
MD19B_ARATH	2.6e-67	67.13	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of CmoCh17G012940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K716_CUCSA	1.5e-106	96.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1	[more]
W9QLS7_9ROSA	1.1e-96	84.93	Uncharacterized protein OS=Morus notabilis GN=L484_013773 PE=4 SV=1	[more]
A0A103YLX8_CYNCS	3.1e-91	81.19	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010049 PE=4 ...	[more]
A0A067LLG0_JATCU	2.0e-90	80.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1	[more]
A0A061DNR0_THECC	2.6e-90	79.64	Mediator of RNA polymerase II transcription subunit 19 OS=Theobroma cacao GN=TCM...	[more]

BLAST of CmoCh17G012940 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12230.1	3.9e-82	73.09	MED19A	[more]
AT5G19480.1	1.5e-68	67.13	unknown protein	[more]

BLAST of CmoCh17G012940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462429\|ref\|XP_004148943.1\|	3.9e-108	96.35	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
gi\|659092757\|ref\|XP_008447203.1\|	8.8e-108	95.89	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
gi\|700189481\|gb\|KGN44714.1\|	2.2e-106	96.30	hypothetical protein Csa_7G374560 [Cucumis sativus]	[more]
gi\|703078009\|ref\|XP_010090751.1\|	1.6e-96	84.93	hypothetical protein L484_013773 [Morus notabilis]	[more]
gi\|976928612\|gb\|KVI11539.1\|	4.4e-91	81.19	hypothetical protein Ccrd_010049 [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019403	Mediator_Med19_met

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012940.1	CmoCh17G012940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019403	Mediator complex, subunit Med19, metazoa	PFAM	PF10278	Med19	coord: 12..176 score: 3.
None	No IPR available	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 6..217 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012940	Cucsa.388280	Cucumber (Gy14) v1	cgycmoB1076
CmoCh17G012940	CmaCh08G002780	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G012940	CmaCh17G013270	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012940	Cla014850	Watermelon (97103) v1	cmowmB325
CmoCh17G012940	Csa7G374560	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012940	MELO3C012715	Melon (DHL92) v3.5.1	cmomeB321
CmoCh17G012940	ClCG09G007970	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012940	CSPI07G15350	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012940	Lsi02G021870	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012940	Cp4.1LG12g10470	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012940	Cp4.1LG17g05980	Cucurbita pepo (Zucchini)	cmocpeB355
CmoCh17G012940	MELO3C012715.2	Melon (DHL92) v3.6.1	cmomedB368
CmoCh17G012940	Cla97C09G170580	Watermelon (97103) v2	cmowmbB373
CmoCh17G012940	Bhi09G000995	Wax gourd	cmowgoB0492
CmoCh17G012940	Carg11506	Silver-seed gourd	carcmoB0021
CmoCh17G012940	Carg05104	Silver-seed gourd	carcmoB0112

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G012940	CmoCh08G002770	Cucurbita moschata (Rifu)	cmocmoB311

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012940	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G012940	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012940	Cucumber (Gy14) v2	cgybcmoB903