CmaCh08G002780.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGTAAATGCTGATGTATTCAATTTAGTTCCCTCTCTCTCGTGCACTGACGTAGTTTGACTATACATTGATGCGGTTAGTTGAGCTAGAGCATCTCATTCTAATATAATTTTCCTAAGACATGCAGAAGCGTTAGGATTTCAGGGTTGAAACACACAGGAAAAGAAAGTTTTGCTTGATCTGGAATTGTAGTAGGAAATTTGTAGCTCAAAGTTAGAGCTGATTTTAAAACACTTGAGCCTTTGGAACAGGTTTTTCCTTTAGTAAAGGCTCAAGGGTTTGCCTATATTTTTTGGTGCTTTTATTATCTATGTACAAGATTTTATATAAAGCAAATCAGGCCATATTATAATGTTTGGATCTGGAAAACTTAAAGTTTGATTTTTTGGAGGGGATATTAGATCTCTGATACTTTTGGCTACCGTTTTATCCTTGCATTTCATAGAGATAGCATAATGGAGTTTGACCTGTGAGAACCACCAGGCTTCCTTTACCATACAAATTATTATGCTCTTCTTGTTTTGATAATTAGGAGCAACTTAGGAAGTTATTTAACTCCCTACATTGCCATTTCCCCTAAAACATCAAATCAAATGCCACGGGAGTTATTGATTTCCCATAAGCCTCACAACAAGTTCTGAAAAAGATCCTTGCAAAAGTTCTTATTGAAAGGTTGAAAAAATTCCTGCCTGATATGATTTGATTCTTACTTCCAATTGAACTTTTGTAGCTGAAAGACAAATCATAGGTCCCGTTTCAATTGCAAATAAAGCTATTGGTTGAGTGGAGGATATCGTGAAAAGTTATAGTACATGATATATCTGTTTTCCGTTCCATTTTGTTCATTTTCTATCTGTATTGATTATCTGCCACCTAAACTTTTCTATGTATTTTTATTTGTGCCTTTAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAGTCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCTTTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGTAATAAATCTATAACTATAATTGTTAAAATGAGCCACTTTCTTTAGCTTTCTTCCGTCAACTGGAACTTTGATGTTAGGCTTGATTATCAGCATTTCTCGTCCTAGTTCTTTTCTCTGCAAGTGATGGTCCATTTCTTTTTCTGGTTAGGCCGAGAAGGGTGTTCCTACTGTTCCAGGGAAGTCAAAAGGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGGTCGGAAAAATTTTATTCTTTTCCAGCTCCTTTGTAGATACCAGGATAAGATAACAATGAAATAGCTCAGGAGTAGATTGTTATTGACGTTAACATTATGGACTTTTTATTTTGTACCAATTTCTTGTTTGTGGTTCCTCACTTCATGAAGCATATCTTCCACTGAATTTTCATCATTTGACATTGATTATCAACCACCAGCATGTCCCGAGGGCAGGGAATTGAAAAGTTAATTTATATGTGCCATATTTTCTCTACTAAAAGTTAAGGATTAAATAATCTTTTTGTGTTTTACTGCCAAACTAATGTATACATTTATTCTGCATATTGCCCAAACGAGCTGTTTCTTAATTTCCAACTTCATTTAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATCGGCACAAAAAAAATAAGGTAATATGAAGTCAAATTTTCTTTTCAGCTCTAGATTACTTGTATACTGCAAGGAACAATCATCCGGGTTAACTTTTATCTTTGTAATCCATATATTTTTTTTATTTTTCGATTGATTGTTTTCCAACTAAAAGCCTTCTGCATTTAATTTCTGCAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAGTCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCTTTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGCCGAGAAGGGTGTTCCTACTGTTCCAGGGAAGTCAAAAGGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATCGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA ATGGAATCTGAAGATAAGAAGTTTGGCCAAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCATCATGAGTTTTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGACACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAGTCCTTCTTACCCTAGAGAGACTAATGCTCGTATACAGCCTTTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGAGCTGCCTCCTGCCGAGAAGGGTGTTCCTACTGTTCCAGGGAAGTCAAAAGGCGAGTCCAAAGATAAAGACAGAAAGCATAAAAAGCACAAAGATAGGGATAAGGATAAGGATAGAGAGCATAAGAAGCACAAGCATCGACATAAAGACCGGAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGCACATCAAGATTCTGGTGCTGACCATTCAAAGAAGCATCACGAAAAGAAAAGGAAGCATGATGGAGAAGATGATATTAATGACATTCATCGGCACAAAAAAAATAAGCATAAGGCCGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGCTGA MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSKGESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKHHEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIKVAG
BLAST of CmaCh08G002780.1 vs. Swiss-Prot
Match: MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 4.0e-84 Identity = 169/223 (75.78%), Postives = 193/223 (86.55%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. Swiss-Prot
Match: MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 3.1e-68 Identity = 146/216 (67.59%), Postives = 174/216 (80.56%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. TrEMBL
Match: A0A0A0K716_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374560 PE=4 SV=1) HSP 1 Score: 391.0 bits (1003), Expect = 9.8e-106 Identity = 203/216 (93.98%), Postives = 212/216 (98.15%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. TrEMBL
Match: W9QLS7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013773 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 1.9e-93 Identity = 179/219 (81.74%), Postives = 204/219 (93.15%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. TrEMBL
Match: A0A103YLX8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010049 PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 2.8e-92 Identity = 177/218 (81.19%), Postives = 205/218 (94.04%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. TrEMBL
Match: A0A022RKZ9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013493mg PE=4 SV=1) HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89 Identity = 174/219 (79.45%), Postives = 199/219 (90.87%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. TrEMBL
Match: A0A067LLG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1) HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89 Identity = 175/221 (79.19%), Postives = 200/221 (90.50%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. TAIR10
Match: AT5G12230.1 (AT5G12230.1 MED19A) HSP 1 Score: 312.4 bits (799), Expect = 2.2e-85 Identity = 169/223 (75.78%), Postives = 193/223 (86.55%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. TAIR10
Match: AT5G19480.1 (AT5G19480.1 unknown protein) HSP 1 Score: 259.6 bits (662), Expect = 1.7e-69 Identity = 146/216 (67.59%), Postives = 174/216 (80.56%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. NCBI nr
Match: gi|659092757|ref|XP_008447203.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo]) HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107 Identity = 207/219 (94.52%), Postives = 215/219 (98.17%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. NCBI nr
Match: gi|449462429|ref|XP_004148943.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis sativus]) HSP 1 Score: 396.4 bits (1017), Expect = 3.3e-107 Identity = 206/219 (94.06%), Postives = 215/219 (98.17%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. NCBI nr
Match: gi|700189481|gb|KGN44714.1| (hypothetical protein Csa_7G374560 [Cucumis sativus]) HSP 1 Score: 391.0 bits (1003), Expect = 1.4e-105 Identity = 203/216 (93.98%), Postives = 212/216 (98.15%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. NCBI nr
Match: gi|703078009|ref|XP_010090751.1| (hypothetical protein L484_013773 [Morus notabilis]) HSP 1 Score: 350.1 bits (897), Expect = 2.7e-93 Identity = 179/219 (81.74%), Postives = 204/219 (93.15%), Query Frame = 1
BLAST of CmaCh08G002780.1 vs. NCBI nr
Match: gi|976928612|gb|KVI11539.1| (hypothetical protein Ccrd_010049 [Cynara cardunculus var. scolymus]) HSP 1 Score: 346.3 bits (887), Expect = 4.0e-92 Identity = 177/218 (81.19%), Postives = 205/218 (94.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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