CmaCh06G015540 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G015540
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 9721755 .. 9728126 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCGACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACAAAACCCTTCGAATGCAGTCCACAGAACTTCAAAACACAGCCCCTTAAACAACACTGAAGGGCCTTCAAGAGGTAATCCTTACCCACTAATTAGTCAATTAGAGAATACCAGCTTGATTCGGCACCCCACTCGTGAACATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGGAGAGAGGAGAACGGATGATTCACTTTCCATTTGATGTTAACAAGCAGTCTGATGAGTTCTTAGACGCCACGTCAAATACAGTCTTTCTGAACTAATCAAGGAACATATCCGCAGTTATTAAAAAGGTCATGGCTTTTTACTAAATCTTGATGCTTGGCAGTGAATATGCTAAAACTTAAGGTGCCATCATATTTCATTTGCAGGCAAACTTAGGTGTGTAGTACGGCACAGTCACCTTGAACAGAGTAGTTGAAACTCTAAGGTCATTACTTGAGGGGATGAAACTTACCATCTGCCCCCTACATCGACCCCATGGTACAATGTAAGGTTTCAGAATTCGGCAGGATTTTCAATACTGTAGCCATGGAGTTTCTTCGAGGACGGGAAAAACACAAAGGCTTCTATGATGGATATACATCTGTGATTCATGTGACCTTGATACAACTTATCAGTTTTTTGAATAAGTGCAAATACTTTATCGTTGCCAATGTGAAATGGCGAGCAGGTGTTATCTTCCTATGTATTTATTTGAAAAGAAGTCAACAACGTTGAAGAATTTTTACTGATTTCTCTGTAACTACTAACCTTGCCTTGATTTGAGGACTGGACACTCCAAGACAGTTGGGGACATTCTGAAACCATTTCTTGTGCTATTCCATTTCCCCCTTTTCTGTTTATCATGTCAGAATGATGAATGACATAAAAAGGACTTGACATGGCTGTTTCTATTGGCTTTTGAAGGGAGATTTGGTCTGTCAATTTCGCCTCTAGCTCTTATGATGGAGATTACACAATGTTAAAGTTTTTCTATTAGCTTTCCCGCAATGAAATTGTAAGAGTCCAAGCCCACCGCTAGCAGATATTGTCCTTATTGGGCTTTTCCTTTCGGGCTTCCCCCTAAGGTTTTTAAAACGTGTCTACTAGGGAGAGGTTTCTATACTCTTACAAATAGTGCTTTATTCTCTTCTCCAACCGATGTGAGATCTCATATGCAGAATAGGTAGGTTGTTGTCTAGGGATTATAAATTCTTACTTTAACTAGAATTCATATAATTTCCATTTGATTGTAGCTAATGCTTTTGATAGGTTATGTGGATAACGTTGCATGTGCAATGGGTGCCACATGTTTTGACCCCGTTGAAACTTTCTCCAAGAACTTGCTGTGTTTGGATCTTGTCTAGACGCTGTCCATGGGATAGAGGTAACATACTCTGATGACACAACACACTACTTGCTGTCTGTTTAAAAGCAGCCCACTGTACTTACGAATTAAATCAGCTCATTGTACTTTCTTCTATATGAATTAACTTCAACCCATTGAGTCCGAAAAAAAAAACTGAATCTGGGTACGTATATAATACGGCAAAAGACTGATATTAAACATATTTTGCTTGTGGCTGTACTAGTTGATAGGAGGGTGGTGGATTAATATTCACGTCATATAGCCATCGTATGTTCTCTAGTTGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAATCTATTAGCTAAAAAGCCACTTATCATGTTCTTGGGTTGATGTGGAATGAGCTTCTTTTGCCTTTCATATATCTTGAAATGCCTCTTAGATCATAATTGTAAAACTTTGTTTCGGGATAGGTTGAAAAAGTTCCAAACAAACAGTTGCCATTGACCAAAAGGTCGGAGATTCGAATCTCACCCTACAACAGATTTTTATCTCAGGAAAGGACCATTTTTCTTGGGAAGGGTAAAATACTTTAATCAAGTCCATGCACACAATTCTTCTGTACTTTCTATTCTGTTTCGAAATTCTGACTGATATTAAATAGAAAACCCTAGAGGGTTCACAGAGTTTTTTTTTATGGAAGGTTGTGGTAAAAGGGGTTGGTCCCATTTAGTTAGTTGGAAGTCAGTGTCAAGATCTCTTCGAGGGTGGGGGGTCAAGGTCCTCTAAGTGGTTATGGTGGTGTTTTCCCCCCTCTGAAACCACAATCATTGTGGAATTGGATCACAGATTCACAATTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAGGGATGTTCCTTTTCTATTGAGGTTCGACGTTGTGACACGATAGACATAATTTGTCCATCCTCTCTTGAAAAGTGGTATCTTTGCTCTTCTTTGAAGTATTTGGTTGGAAAGAAACTAGAGGTCTTCTTCAGATGATGAGAATTCTTGCCCGGCTTTAATGAATCGATCTGATTTCATATTTCACTACCTTTTTATAGTTGTCACGCACTTTTTCTATCAATATCTGGCCTCCTTTTTGTACCTTCTGCATTTCATTTAATTTTTGTTGCCCTAGTGTTGGCGTAACCACTCTTCGGTCACGCTGCATGTGAGATCCCACATCGATTGGGAAGGAGAATGAAACATTTTTTATATGGGTGTGGAAAACTCTTTCTAGTAAACGCGTTTTAAAAACTTTGAGAGAGAACCTAAAGAGAACAATATCTGCTAACGGTTGGCTTGAGCTGTTACAAATAGTATCAGAGCCAGATATCGGGCAATGTGTCAGTGAGGAGACTAAGCTCCAAAGGGGTGTGGATACGAAGCGGTGTGCTAGCAAGGACGCTGGGCTCTAAAGGGGGTGAATTGGGGGATCCCACATTGATGTGAGAAGGGAATGAGTGCCAGTGAGGACACTGGATCCTGAAGAATGTGGATTGTGAGATCTCACATCGATTGAGTAGAAGAACAAAACATTGTTTATAAGGGTGTATAAACCTCTTCCTAGTAGACGCGTAAAAGGACAATATCTACTAAATTTTGGAAGGGTCAGACCGATGCATAGGGATCAGCTATCATCAACTTGTTGTTGCTGACAAAACAACGTTTCAGTGTATTGATGGCTAGCTACTGATATTCCTTCGCTTTTGAGGGAATACTTGTCTGTTTGCTAAATCTGGACCACTGCATTGATCCCTTTGATTCTACCATTCTGCAAGTGGGTTTATATTTAATATACTTGCTTGCCAAATTGAATTCTTTCACAGTTTAGGTTGGGGAGTTAGTGAGAAACTTTATGAGTTCTCTTTTAAAATCCATTTCTTCAGGGATAGCTATTCTCCATATTGGGGGGTGAATTTAGTTGGCGCTCGAGCGAGTGGTTGGATTATTTCACTCGATCATAATGTCTCAACGTGACAGCAAAACGCCCTGACATCACGAGTCGATCAGTTTGCATCTCAGCCAAGTTTGCTTCGACGTGATGAGCTCGACCCGAGCGGTAGGAAATTAAAAGAAGGCTGCAAAACTTTGTAAAAACTTCTATCAAACTACAAAGTTTCTTATCCATGGAGATGGTTTGGCTGAATCTAACCCCCCATATGTTTTGAG

mRNA sequence

ATGAAAGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCGACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACAAAACCCTTCGAATGCAGTCCACAGAACTTCAAAACACAGCCCCTTAAACAACACTGAAGGGCCTTCAAGAGGTTATGTGGATAACGTTGCATGTGCAATGGGTGCCACATGTTTTGACCCCGTTGAAACTTTCTCCAAGAACTTGCTGTGTTTGGATCTTGTCTAGACGCTGTCCATGGGATAGAGGGATAGCTATTCTCCATATTGGGGGGTGAATTTAGTTGGCGCTCGAGCGAGTGGTTGGATTATTTCACTCGATCATAATGTCTCAACGTGACAGCAAAACGCCCTGACATCACGAGTCGATCAGTTTGCATCTCAGCCAAGTTTGCTTCGACGTGATGAGCTCGACCCGAGCGGTAGGAAATTAAAAGAAGGCTGCAAAACTTTGTAAAAACTTCTATCAAACTACAAAGTTTCTTATCCATGGAGATGGTTTGGCTGAATCTAACCCCCCATATGTTTTGAG

Coding sequence (CDS)

ATGAAAGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCGACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACAAAACCCTTCGAATGCAGTCCACAGAACTTCAAAACACAGCCCCTTAAACAACACTGAAGGGCCTTCAAGAGGTTATGTGGATAACGTTGCATGTGCAATGGGTGCCACATGTTTTGACCCCGTTGAAACTTTCTCCAAGAACTTGCTGTGTTTGGATCTTGTCTAG

Protein sequence

MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNNTEGPSRGYVDNVACAMGATCFDPVETFSKNLLCLDLV
Homology
[Close]
BLAST of CmaCh06G015540 vs. TrEMBL
Match: A0A0A0L5W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-12
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 1  MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNNTEGPSRG 57
          M+G  SS  RATPVLRNRP +AY+ IN++RRQ PSN++ RTSK SP NN E PSRG
Sbjct: 1  MRGFPSSAFRATPVLRNRPLQAYTPINKHRRQLPSNSIQRTSKQSPFNNLEAPSRG 56

[Close]
BLAST of CmaCh06G015540 vs. NCBI nr
Match: gi|778679015|ref|XP_011651072.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 1  MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNNTEGPSRG 57
          M+G  SS  RATPVLRNRP +AY+ IN++RRQ PSN++ RTSK SP NN E PSRG
Sbjct: 1  MRGFPSSAFRATPVLRNRPLQAYTPINKHRRQLPSNSIQRTSKQSPFNNLEAPSRG 56

[Close]
BLAST of CmaCh06G015540 vs. NCBI nr
Match: gi|659076906|ref|XP_008438926.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 1  MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNN-TEGPSRG 57
          M+G  S   R TPVLRNRP +AY+ IN +RRQ PS+++ RTSK S  NN  E PSRG
Sbjct: 1  MRGFLSLAFRETPVLRNRPLQAYTPINNHRRQFPSDSIQRTSKQSSFNNIVEAPSRG 57

The following BLAST results are available for this feature:
BLAST of CmaCh06G015540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G015540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5W1_CUCSA9.4e-1266.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165700 PE=4 SV=1[more]
BLAST of CmaCh06G015540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G015540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679015|ref|XP_011651072.1|1.3e-1166.07PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitoc... [more]
gi|659076906|ref|XP_008438926.1|2.6e-0757.89PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitoc... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006950 response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G015540.1CmaCh06G015540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G015540CmoCh06G015530Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G015540Lsi05G015790Bottle gourd (USVL1VR-Ls)cmalsiB757
CmaCh06G015540Cp4.1LG08g05250Cucurbita pepo (Zucchini)cmacpeB853
CmaCh06G015540MELO3C006701.2Melon (DHL92) v3.6.1cmamedB863
CmaCh06G015540CsaV3_3G015050Cucumber (Chinese Long) v3cmacucB0965
CmaCh06G015540Bhi01G000768Wax gourdcmawgoB1006
CmaCh06G015540CsGy3G014960Cucumber (Gy14) v2cgybcmaB427
CmaCh06G015540Carg23743Silver-seed gourdcarcmaB1307
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh06G015540CmaCh00G004290Cucurbita maxima (Rimu)cmacmaB020
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G015540Cucumber (Chinese Long) v3cmacucB1001
CmaCh06G015540Watermelon (97103) v2cmawmbB856
CmaCh06G015540Watermelon (97103) v2cmawmbB865
CmaCh06G015540Wax gourdcmawgoB1001
CmaCh06G015540Cucurbita maxima (Rimu)cmacmaB284
CmaCh06G015540Cucurbita maxima (Rimu)cmacmaB369
CmaCh06G015540Cucurbita maxima (Rimu)cmacmaB554
CmaCh06G015540Cucumber (Gy14) v1cgycmaB0727
CmaCh06G015540Cucurbita moschata (Rifu)cmacmoB812
CmaCh06G015540Cucurbita moschata (Rifu)cmacmoB797
CmaCh06G015540Cucurbita moschata (Rifu)cmacmoB840
CmaCh06G015540Wild cucumber (PI 183967)cmacpiB826
CmaCh06G015540Wild cucumber (PI 183967)cmacpiB862
CmaCh06G015540Cucumber (Chinese Long) v2cmacuB814
CmaCh06G015540Cucumber (Chinese Long) v2cmacuB845
CmaCh06G015540Melon (DHL92) v3.5.1cmameB747
CmaCh06G015540Melon (DHL92) v3.5.1cmameB763
CmaCh06G015540Watermelon (Charleston Gray)cmawcgB737
CmaCh06G015540Watermelon (Charleston Gray)cmawcgB745
CmaCh06G015540Watermelon (97103) v1cmawmB798
CmaCh06G015540Watermelon (97103) v1cmawmB811
CmaCh06G015540Cucurbita pepo (Zucchini)cmacpeB837
CmaCh06G015540Cucurbita pepo (Zucchini)cmacpeB812
CmaCh06G015540Bottle gourd (USVL1VR-Ls)cmalsiB741
CmaCh06G015540Cucumber (Gy14) v2cgybcmaB858
CmaCh06G015540Melon (DHL92) v3.6.1cmamedB846
CmaCh06G015540Silver-seed gourdcarcmaB0095
CmaCh06G015540Silver-seed gourdcarcmaB0393
CmaCh06G015540Silver-seed gourdcarcmaB0987