CmaCh06G015540.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G015540.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 9721755 .. 9728126 (-)
Sequence length564
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCGACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACAAAACCCTTCGAATGCAGTCCACAGAACTTCAAAACACAGCCCCTTAAACAACACTGAAGGGCCTTCAAGAGGTAATCCTTACCCACTAATTAGTCAATTAGAGAATACCAGCTTGATTCGGCACCCCACTCGTGAACATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGGAGAGAGGAGAACGGATGATTCACTTTCCATTTGATGTTAACAAGCAGTCTGATGAGTTCTTAGACGCCACGTCAAATACAGTCTTTCTGAACTAATCAAGGAACATATCCGCAGTTATTAAAAAGGTCATGGCTTTTTACTAAATCTTGATGCTTGGCAGTGAATATGCTAAAACTTAAGGTGCCATCATATTTCATTTGCAGGCAAACTTAGGTGTGTAGTACGGCACAGTCACCTTGAACAGAGTAGTTGAAACTCTAAGGTCATTACTTGAGGGGATGAAACTTACCATCTGCCCCCTACATCGACCCCATGGTACAATGTAAGGTTTCAGAATTCGGCAGGATTTTCAATACTGTAGCCATGGAGTTTCTTCGAGGACGGGAAAAACACAAAGGCTTCTATGATGGATATACATCTGTGATTCATGTGACCTTGATACAACTTATCAGTTTTTTGAATAAGTGCAAATACTTTATCGTTGCCAATGTGAAATGGCGAGCAGGTGTTATCTTCCTATGTATTTATTTGAAAAGAAGTCAACAACGTTGAAGAATTTTTACTGATTTCTCTGTAACTACTAACCTTGCCTTGATTTGAGGACTGGACACTCCAAGACAGTTGGGGACATTCTGAAACCATTTCTTGTGCTATTCCATTTCCCCCTTTTCTGTTTATCATGTCAGAATGATGAATGACATAAAAAGGACTTGACATGGCTGTTTCTATTGGCTTTTGAAGGGAGATTTGGTCTGTCAATTTCGCCTCTAGCTCTTATGATGGAGATTACACAATGTTAAAGTTTTTCTATTAGCTTTCCCGCAATGAAATTGTAAGAGTCCAAGCCCACCGCTAGCAGATATTGTCCTTATTGGGCTTTTCCTTTCGGGCTTCCCCCTAAGGTTTTTAAAACGTGTCTACTAGGGAGAGGTTTCTATACTCTTACAAATAGTGCTTTATTCTCTTCTCCAACCGATGTGAGATCTCATATGCAGAATAGGTAGGTTGTTGTCTAGGGATTATAAATTCTTACTTTAACTAGAATTCATATAATTTCCATTTGATTGTAGCTAATGCTTTTGATAGGTTATGTGGATAACGTTGCATGTGCAATGGGTGCCACATGTTTTGACCCCGTTGAAACTTTCTCCAAGAACTTGCTGTGTTTGGATCTTGTCTAGACGCTGTCCATGGGATAGAGGTAACATACTCTGATGACACAACACACTACTTGCTGTCTGTTTAAAAGCAGCCCACTGTACTTACGAATTAAATCAGCTCATTGTACTTTCTTCTATATGAATTAACTTCAACCCATTGAGTCCGAAAAAAAAAACTGAATCTGGGTACGTATATAATACGGCAAAAGACTGATATTAAACATATTTTGCTTGTGGCTGTACTAGTTGATAGGAGGGTGGTGGATTAATATTCACGTCATATAGCCATCGTATGTTCTCTAGTTGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAATCTATTAGCTAAAAAGCCACTTATCATGTTCTTGGGTTGATGTGGAATGAGCTTCTTTTGCCTTTCATATATCTTGAAATGCCTCTTAGATCATAATTGTAAAACTTTGTTTCGGGATAGGTTGAAAAAGTTCCAAACAAACAGTTGCCATTGACCAAAAGGTCGGAGATTCGAATCTCACCCTACAACAGATTTTTATCTCAGGAAAGGACCATTTTTCTTGGGAAGGGTAAAATACTTTAATCAAGTCCATGCACACAATTCTTCTGTACTTTCTATTCTGTTTCGAAATTCTGACTGATATTAAATAGAAAACCCTAGAGGGTTCACAGAGTTTTTTTTTATGGAAGGTTGTGGTAAAAGGGGTTGGTCCCATTTAGTTAGTTGGAAGTCAGTGTCAAGATCTCTTCGAGGGTGGGGGGTCAAGGTCCTCTAAGTGGTTATGGTGGTGTTTTCCCCCCTCTGAAACCACAATCATTGTGGAATTGGATCACAGATTCACAATTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAGGGATGTTCCTTTTCTATTGAGGTTCGACGTTGTGACACGATAGACATAATTTGTCCATCCTCTCTTGAAAAGTGGTATCTTTGCTCTTCTTTGAAGTATTTGGTTGGAAAGAAACTAGAGGTCTTCTTCAGATGATGAGAATTCTTGCCCGGCTTTAATGAATCGATCTGATTTCATATTTCACTACCTTTTTATAGTTGTCACGCACTTTTTCTATCAATATCTGGCCTCCTTTTTGTACCTTCTGCATTTCATTTAATTTTTGTTGCCCTAGTGTTGGCGTAACCACTCTTCGGTCACGCTGCATGTGAGATCCCACATCGATTGGGAAGGAGAATGAAACATTTTTTATATGGGTGTGGAAAACTCTTTCTAGTAAACGCGTTTTAAAAACTTTGAGAGAGAACCTAAAGAGAACAATATCTGCTAACGGTTGGCTTGAGCTGTTACAAATAGTATCAGAGCCAGATATCGGGCAATGTGTCAGTGAGGAGACTAAGCTCCAAAGGGGTGTGGATACGAAGCGGTGTGCTAGCAAGGACGCTGGGCTCTAAAGGGGGTGAATTGGGGGATCCCACATTGATGTGAGAAGGGAATGAGTGCCAGTGAGGACACTGGATCCTGAAGAATGTGGATTGTGAGATCTCACATCGATTGAGTAGAAGAACAAAACATTGTTTATAAGGGTGTATAAACCTCTTCCTAGTAGACGCGTAAAAGGACAATATCTACTAAATTTTGGAAGGGTCAGACCGATGCATAGGGATCAGCTATCATCAACTTGTTGTTGCTGACAAAACAACGTTTCAGTGTATTGATGGCTAGCTACTGATATTCCTTCGCTTTTGAGGGAATACTTGTCTGTTTGCTAAATCTGGACCACTGCATTGATCCCTTTGATTCTACCATTCTGCAAGTGGGTTTATATTTAATATACTTGCTTGCCAAATTGAATTCTTTCACAGTTTAGGTTGGGGAGTTAGTGAGAAACTTTATGAGTTCTCTTTTAAAATCCATTTCTTCAGGGATAGCTATTCTCCATATTGGGGGGTGAATTTAGTTGGCGCTCGAGCGAGTGGTTGGATTATTTCACTCGATCATAATGTCTCAACGTGACAGCAAAACGCCCTGACATCACGAGTCGATCAGTTTGCATCTCAGCCAAGTTTGCTTCGACGTGATGAGCTCGACCCGAGCGGTAGGAAATTAAAAGAAGGCTGCAAAACTTTGTAAAAACTTCTATCAAACTACAAAGTTTCTTATCCATGGAGATGGTTTGGCTGAATCTAACCCCCCATATGTTTTGAG

mRNA sequence

ATGAAAGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCGACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACAAAACCCTTCGAATGCAGTCCACAGAACTTCAAAACACAGCCCCTTAAACAACACTGAAGGGCCTTCAAGAGGTTATGTGGATAACGTTGCATGTGCAATGGGTGCCACATGTTTTGACCCCGTTGAAACTTTCTCCAAGAACTTGCTGTGTTTGGATCTTGTCTAGACGCTGTCCATGGGATAGAGGGATAGCTATTCTCCATATTGGGGGGTGAATTTAGTTGGCGCTCGAGCGAGTGGTTGGATTATTTCACTCGATCATAATGTCTCAACGTGACAGCAAAACGCCCTGACATCACGAGTCGATCAGTTTGCATCTCAGCCAAGTTTGCTTCGACGTGATGAGCTCGACCCGAGCGGTAGGAAATTAAAAGAAGGCTGCAAAACTTTGTAAAAACTTCTATCAAACTACAAAGTTTCTTATCCATGGAGATGGTTTGGCTGAATCTAACCCCCCATATGTTTTGAG

Coding sequence (CDS)

ATGAAAGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCGACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACAAAACCCTTCGAATGCAGTCCACAGAACTTCAAAACACAGCCCCTTAAACAACACTGAAGGGCCTTCAAGAGGTTATGTGGATAACGTTGCATGTGCAATGGGTGCCACATGTTTTGACCCCGTTGAAACTTTCTCCAAGAACTTGCTGTGTTTGGATCTTGTCTAG

Protein sequence

MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNNTEGPSRGYVDNVACAMGATCFDPVETFSKNLLCLDLV
Homology
[Close]
BLAST of CmaCh06G015540.1 vs. TrEMBL
Match: A0A0A0L5W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-12
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 1  MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNNTEGPSRG 57
          M+G  SS  RATPVLRNRP +AY+ IN++RRQ PSN++ RTSK SP NN E PSRG
Sbjct: 1  MRGFPSSAFRATPVLRNRPLQAYTPINKHRRQLPSNSIQRTSKQSPFNNLEAPSRG 56

[Close]
BLAST of CmaCh06G015540.1 vs. NCBI nr
Match: gi|778679015|ref|XP_011651072.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 1  MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNNTEGPSRG 57
          M+G  SS  RATPVLRNRP +AY+ IN++RRQ PSN++ RTSK SP NN E PSRG
Sbjct: 1  MRGFPSSAFRATPVLRNRPLQAYTPINKHRRQLPSNSIQRTSKQSPFNNLEAPSRG 56

[Close]
BLAST of CmaCh06G015540.1 vs. NCBI nr
Match: gi|659076906|ref|XP_008438926.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 1  MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNAVHRTSKHSPLNN-TEGPSRG 57
          M+G  S   R TPVLRNRP +AY+ IN +RRQ PS+++ RTSK S  NN  E PSRG
Sbjct: 1  MRGFLSLAFRETPVLRNRPLQAYTPINNHRRQFPSDSIQRTSKQSSFNNIVEAPSRG 57

The following BLAST results are available for this feature:
BLAST of CmaCh06G015540.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G015540.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5W1_CUCSA9.4e-1266.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165700 PE=4 SV=1[more]
BLAST of CmaCh06G015540.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G015540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679015|ref|XP_011651072.1|1.3e-1166.07PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitoc... [more]
gi|659076906|ref|XP_008438926.1|2.6e-0757.89PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitoc... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh06G015540CmaCh06G015540gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh06G015540.1CmaCh06G015540.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G015540.1.three_prime_UTR.2CmaCh06G015540.1.three_prime_UTR.2three_prime_UTR
CmaCh06G015540.1.three_prime_UTR.1CmaCh06G015540.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G015540.1.CDS.2CmaCh06G015540.1.CDS.2CDS
CmaCh06G015540.1.CDS.1CmaCh06G015540.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G015540.1.exon.3CmaCh06G015540.1.exon.3exon
CmaCh06G015540.1.exon.2CmaCh06G015540.1.exon.2exon
CmaCh06G015540.1.exon.1CmaCh06G015540.1.exon.1exon