Carg23743 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23743
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_213 : 327515 .. 329581 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCAACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACGAAACCCTTCGAACACAGTCCACAGAACTTCAAAACACAACCCCTTGAACAACACTGAAGCGCCTTCAAGAGGTAATCCTTACCCACTAACTAGTCAATTAGAGAATACCAGCTTGATTCGGCACCCCACTCGTGAACATAGTTTGAATCTTAAACCAATTGATCATTCATATATTTCTAGGATTCTATTGAGCAAGGACTGGTTTCTATTGCTAAACCACGAGTTTAAGGCGAAGAGGCTCGTTTTGGCTCCTCAATTTGTTGTTAGTATTTTGCAAAATCAAGAAAACCCATTAAATGCTATAAGATTTTATATCTGGGTTTCGAATATCGACCCTTCACTTGCAAAGAAACAATCTATTCGAGGGGTTCTTGGCCGCAACCTTTATCGAGAAGGTCCTGATCGTCCGGTGTTATTGTCAGTTGATCTACTTCAGCAAATTAAAGAGTCTGGTCTTAAAGTGACACAGGAATTGCTTTGTATATTACTTGGAAGTTGGGGTAGATTGGGTTTGGCAAAATACTGTGTGGAAGTATTTGGGCAAATTTCGTTTCTGGGACTTAATCCCACCACCAGACTGTACAATGCTGTAATTGATGCATTGATCAAGTCCAATTCTCTGGACTTGGCTTATTTAAAATTTCAGCAAATGTCGTCTCATAACTGCGTTCCTGATAGGTTCACTTACAACATTCTCATCCATGGTGTTTGTAGGCTTGGGGTGGTGGATGAGGCACTTCGTTTGATGAAACAAATGGAGGGCTTGGGATATTTTCCGAATGTGTTCACGTATACGATCTTGATTGATGGATTTTTCAATGCCATGAGGGCTGAGGAAGCCTTTGGAGTTTTACAGACAATGAAGGAGAGGAATGTGGTTCCAAATGCAGCAACTATGAGATCCCTGGTTCATGGAGTATTTCGTTGTTGTGCCCCGGATAAAGCTTTTGAATATTTATTGGAATTTGTCGAGAAGAAGCCAAGCGTGTCTCAATTGGTCTGTGACAATATTCTTTACTGCCTTTCAAATAATTCTATGGCCAGTGAGGCTGTTATGTTTTTGAGTAAAATGGGGAAGAAAGGTTATGTTCCGGATAGTTCAACCTTTAACGTCACTATGGCATGTGTATTAAATAAGCTAGACCTGAAAGAAGCTTGTGATATATTCGATAATTGTAGGCAGAGAGGTGTCAAGCCAGGGTTCAGTACATATCTTGCGCTTATTGAAGCTCTGTACAAGGCGGGGAAAACGGAGATTGGAAACAAATATATGGATCGAATAATAAAGGATGGTCTTGTTTCGAACAACTATTCATATAATATGGTCATTGATTGCCTTTGCAAAGGCAAATTAATGGACAGAGCAGCAGAAATCTTTAGGGATCTGCAGTCTAAAGGCATTTCTCCAAATATTGTAACTTTTAATACACTTATTAGTGGGTATTGCAGAAATGGAGGTATGGACAAAGCTCAGGAATTTCTTGAAATGCTATTAGAATGTCGTTTTAGACCCGATGTCTTCACTTTTAATTCAGTAATTGATGGCCTCTGTCAAGCACACAAGTACGAAGATGCTTTTGGTTGTTTCAATGAAATGGTCGAGTGGGATGTCACTCCAAATGCTATCACGTATAATATATTGATACGCTCCTTTTGTGCGATTGGAAATGTTGCTAGATCTACTCAACTCTTGAGAAAAATGCAACTTCAGGGTATACAACCCGATACTTTTTCCTTCAATGCTCTTATCCAAAGCTACTTTCGAATGAATAAAGTTCATAAAGCTGAGAAGCTTTTTGATTCAATGTTAAGGTTGGGTATACAGCCCAACAATTATACTTATGGTGCTTTTATTAAGTCATTGTGCAAGTCAGGTAGGCATGATGAAGCAAGGGAGATGTTTCTCTCAATGAAGGTGAATGGTTGTACTCCTGACTCTTATACTTGCAGTCTTATTAACGCCCATATTTAA

mRNA sequence

ATGAAGGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCAACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACGAAACCCTTCGAACACAGTCCACAGAACTTCAAAACACAACCCCTTGAACAACACTGAAGCGCCTTCAAGAGGTAATCCTTACCCACTAACTAGTCAATTAGAGAATACCAGCTTGATTCGGCACCCCACTCGTGAACATAGTTTGAATCTTAAACCAATTGATCATTCATATATTTCTAGGATTCTATTGAGCAAGGACTGGTTTCTATTGCTAAACCACGAGTTTAAGGCGAAGAGGCTCGTTTTGGCTCCTCAATTTGTTGTTAGTATTTTGCAAAATCAAGAAAACCCATTAAATGCTATAAGATTTTATATCTGGGTTTCGAATATCGACCCTTCACTTGCAAAGAAACAATCTATTCGAGGGGTTCTTGGCCGCAACCTTTATCGAGAAGGTCCTGATCGTCCGGTGTTATTGTCAGTTGATCTACTTCAGCAAATTAAAGAGTCTGGTCTTAAAGTGACACAGGAATTGCTTTGTATATTACTTGGAAGTTGGGGTAGATTGGGTTTGGCAAAATACTGTGTGGAAGTATTTGGGCAAATTTCGTTTCTGGGACTTAATCCCACCACCAGACTGTACAATGCTGTAATTGATGCATTGATCAAGTCCAATTCTCTGGACTTGGCTTATTTAAAATTTCAGCAAATGTCGTCTCATAACTGCGTTCCTGATAGGTTCACTTACAACATTCTCATCCATGGTGTTTGTAGGCTTGGGGTGGTGGATGAGGCACTTCGTTTGATGAAACAAATGGAGGGCTTGGGATATTTTCCGAATGTGTTCACGTATACGATCTTGATTGATGGATTTTTCAATGCCATGAGGGCTGAGGAAGCCTTTGGAGTTTTACAGACAATGAAGGAGAGGAATGTGGTTCCAAATGCAGCAACTATGAGATCCCTGGTTCATGGAGTATTTCGTTGTTGTGCCCCGGATAAAGCTTTTGAATATTTATTGGAATTTGTCGAGAAGAAGCCAAGCGTGTCTCAATTGGTCTGTGACAATATTCTTTACTGCCTTTCAAATAATTCTATGGCCAGTGAGGCTGTTATGTTTTTGAGTAAAATGGGGAAGAAAGGTTATGTTCCGGATAGTTCAACCTTTAACGTCACTATGGCATGTGTATTAAATAAGCTAGACCTGAAAGAAGCTTGTGATATATTCGATAATTGTAGGCAGAGAGGTGTCAAGCCAGGGTTCAGTACATATCTTGCGCTTATTGAAGCTCTGTACAAGGCGGGGAAAACGGAGATTGGAAACAAATATATGGATCGAATAATAAAGGATGGTCTTGTTTCGAACAACTATTCATATAATATGGTCATTGATTGCCTTTGCAAAGGCAAATTAATGGACAGAGCAGCAGAAATCTTTAGGGATCTGCAGTCTAAAGGCATTTCTCCAAATATTGTAACTTTTAATACACTTATTAGTGGGTATTGCAGAAATGGAGGTATGGACAAAGCTCAGGAATTTCTTGAAATGCTATTAGAATGTCGTTTTAGACCCGATGTCTTCACTTTTAATTCAGTAATTGATGGCCTCTGTCAAGCACACAAGTACGAAGATGCTTTTGGTTGTTTCAATGAAATGGTCGAGTGGGATGTCACTCCAAATGCTATCACGTATAATATATTGATACGCTCCTTTTGTGCGATTGGAAATGTTGCTAGATCTACTCAACTCTTGAGAAAAATGCAACTTCAGGGTATACAACCCGATACTTTTTCCTTCAATGCTCTTATCCAAAGCTACTTTCGAATGAATAAAGTTCATAAAGCTGAGAAGCTTTTTGATTCAATGTTAAGGTTGGGTATACAGCCCAACAATTATACTTATGGTGCTTTTATTAAGTCATTGTGCAAGTCAGGTAGGCATGATGAAGCAAGGGAGATGTTTCTCTCAATGAAGGTGAATGGTTGTACTCCTGACTCTTATACTTGCAGTCTTATTAACGCCCATATTTAA

Coding sequence (CDS)

ATGAAGGGGCTTCATTCTTCGGGTCTCAGGGCGACGCCTGTTCTAAGAAATCAACCTCAAGAAGCTTACTCCACGATTAACGAGTATCGGAGACGAAACCCTTCGAACACAGTCCACAGAACTTCAAAACACAACCCCTTGAACAACACTGAAGCGCCTTCAAGAGGTAATCCTTACCCACTAACTAGTCAATTAGAGAATACCAGCTTGATTCGGCACCCCACTCGTGAACATAGTTTGAATCTTAAACCAATTGATCATTCATATATTTCTAGGATTCTATTGAGCAAGGACTGGTTTCTATTGCTAAACCACGAGTTTAAGGCGAAGAGGCTCGTTTTGGCTCCTCAATTTGTTGTTAGTATTTTGCAAAATCAAGAAAACCCATTAAATGCTATAAGATTTTATATCTGGGTTTCGAATATCGACCCTTCACTTGCAAAGAAACAATCTATTCGAGGGGTTCTTGGCCGCAACCTTTATCGAGAAGGTCCTGATCGTCCGGTGTTATTGTCAGTTGATCTACTTCAGCAAATTAAAGAGTCTGGTCTTAAAGTGACACAGGAATTGCTTTGTATATTACTTGGAAGTTGGGGTAGATTGGGTTTGGCAAAATACTGTGTGGAAGTATTTGGGCAAATTTCGTTTCTGGGACTTAATCCCACCACCAGACTGTACAATGCTGTAATTGATGCATTGATCAAGTCCAATTCTCTGGACTTGGCTTATTTAAAATTTCAGCAAATGTCGTCTCATAACTGCGTTCCTGATAGGTTCACTTACAACATTCTCATCCATGGTGTTTGTAGGCTTGGGGTGGTGGATGAGGCACTTCGTTTGATGAAACAAATGGAGGGCTTGGGATATTTTCCGAATGTGTTCACGTATACGATCTTGATTGATGGATTTTTCAATGCCATGAGGGCTGAGGAAGCCTTTGGAGTTTTACAGACAATGAAGGAGAGGAATGTGGTTCCAAATGCAGCAACTATGAGATCCCTGGTTCATGGAGTATTTCGTTGTTGTGCCCCGGATAAAGCTTTTGAATATTTATTGGAATTTGTCGAGAAGAAGCCAAGCGTGTCTCAATTGGTCTGTGACAATATTCTTTACTGCCTTTCAAATAATTCTATGGCCAGTGAGGCTGTTATGTTTTTGAGTAAAATGGGGAAGAAAGGTTATGTTCCGGATAGTTCAACCTTTAACGTCACTATGGCATGTGTATTAAATAAGCTAGACCTGAAAGAAGCTTGTGATATATTCGATAATTGTAGGCAGAGAGGTGTCAAGCCAGGGTTCAGTACATATCTTGCGCTTATTGAAGCTCTGTACAAGGCGGGGAAAACGGAGATTGGAAACAAATATATGGATCGAATAATAAAGGATGGTCTTGTTTCGAACAACTATTCATATAATATGGTCATTGATTGCCTTTGCAAAGGCAAATTAATGGACAGAGCAGCAGAAATCTTTAGGGATCTGCAGTCTAAAGGCATTTCTCCAAATATTGTAACTTTTAATACACTTATTAGTGGGTATTGCAGAAATGGAGGTATGGACAAAGCTCAGGAATTTCTTGAAATGCTATTAGAATGTCGTTTTAGACCCGATGTCTTCACTTTTAATTCAGTAATTGATGGCCTCTGTCAAGCACACAAGTACGAAGATGCTTTTGGTTGTTTCAATGAAATGGTCGAGTGGGATGTCACTCCAAATGCTATCACGTATAATATATTGATACGCTCCTTTTGTGCGATTGGAAATGTTGCTAGATCTACTCAACTCTTGAGAAAAATGCAACTTCAGGGTATACAACCCGATACTTTTTCCTTCAATGCTCTTATCCAAAGCTACTTTCGAATGAATAAAGTTCATAAAGCTGAGAAGCTTTTTGATTCAATGTTAAGGTTGGGTATACAGCCCAACAATTATACTTATGGTGCTTTTATTAAGTCATTGTGCAAGTCAGGTAGGCATGATGAAGCAAGGGAGATGTTTCTCTCAATGAAGGTGAATGGTTGTACTCCTGACTCTTATACTTGCAGTCTTATTAACGCCCATATTTAA

Protein sequence

MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSNTVHRTSKHNPLNNTEAPSRGNPYPLTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAMRAEEAFGVLQTMKERNVVPNAATMRSLVHGVFRCCAPDKAFEYLLEFVEKKPSVSQLVCDNILYCLSNNSMASEAVMFLSKMGKKGYVPDSSTFNVTMACVLNKLDLKEACDIFDNCRQRGVKPGFSTYLALIEALYKAGKTEIGNKYMDRIIKDGLVSNNYSYNMVIDCLCKGKLMDRAAEIFRDLQSKGISPNIVTFNTLISGYCRNGGMDKAQEFLEMLLECRFRPDVFTFNSVIDGLCQAHKYEDAFGCFNEMVEWDVTPNAITYNILIRSFCAIGNVARSTQLLRKMQLQGIQPDTFSFNALIQSYFRMNKVHKAEKLFDSMLRLGIQPNNYTYGAFIKSLCKSGRHDEAREMFLSMKVNGCTPDSYTCSLINAHI

Homology

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BLAST of Carg23743 vs. NCBI nr
Match: XP_022975218.1 (putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucurbita maxima])

HSP 1 Score: 414.5 bits (1064), Expect = 7.2e-112
Identity = 213/242 (88.02%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKGLHSSGLRATPVLRN+PQEAYSTINEYRR+NPS                         
Sbjct: 1   MKGLHSSGLRATPVLRNRPQEAYSTINEYRRQNPSNTVHRTSKHSPLNNTEGPSRGNPYP 60

Query: 61  LTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVV 120
           L SQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVV
Sbjct: 61  LISQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVV 120

Query: 121 SILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIK 180
           SILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLG+NLYREGPDRPVLLSVDLLQQIK
Sbjct: 121 SILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGQNLYREGPDRPVLLSVDLLQQIK 180

Query: 181 ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD 240
           ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD
Sbjct: 181 ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD 240

Query: 241 LA 243
           LA
Sbjct: 241 LA 242

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BLAST of Carg23743 vs. NCBI nr
Match: XP_022934625.1 (putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucurbita moschata])

HSP 1 Score: 412.1 bits (1058), Expect = 3.6e-111
Identity = 238/242 (98.35%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKGLHSSGLRATPVLRN+PQEAYSTINEYRRR   XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKGLHSSGLRATPVLRNRPQEAYSTINEYRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVV 120
           LTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVV
Sbjct: 61  LTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVV 120

Query: 121 SILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIK 180
           SILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIK
Sbjct: 121 SILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIK 180

Query: 181 ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD 240
           ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD
Sbjct: 181 ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD 240

Query: 241 LA 243
           LA
Sbjct: 241 LA 242

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BLAST of Carg23743 vs. NCBI nr
Match: XP_023539285.1 (putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400.2 bits (1027), Expect = 1.4e-107
Identity = 232/242 (95.87%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKGLHSSGLRATPVLRN+PQ+AYSTINEY      XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKGLHSSGLRATPVLRNRPQQAYSTINEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVV 120
           LTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVL PQFVV
Sbjct: 61  LTSQLENTSLIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLDPQFVV 120

Query: 121 SILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIK 180
           SILQNQENPLNAIRFYIWVSNIDPSLA+KQSIRGVLGRNLYREGPDRPVLLSVDLLQQIK
Sbjct: 121 SILQNQENPLNAIRFYIWVSNIDPSLAEKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIK 180

Query: 181 ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD 240
           ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD
Sbjct: 181 ESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLD 240

Query: 241 LA 243
           LA
Sbjct: 241 LA 242

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BLAST of Carg23743 vs. NCBI nr
Match: XP_008438927.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis melo] >XP_008438928.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis melo] >XP_016898969.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis melo] >XP_016898970.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucumis melo])

HSP 1 Score: 317.4 bits (812), Expect = 1.2e-82
Identity = 173/249 (69.48%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPS-XXXXXXXXXXXXXXXXXXXXXXXX 60
           M+G  S   R TPVLRN+P +AY+ IN +RR+ PS                         
Sbjct: 1   MRGFLSLAFRETPVLRNRPLQAYTPINNHRRQFPSDSIQRTSKQSSFNNIVEAPSRGNPS 60

Query: 61  XLTSQLENTSLIRHPTR------EHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLV 120
            LT+ L+ +S I+  TR      EH    KPIDHSYIS+ILLSKDWFLLLNHEFKAKR+V
Sbjct: 61  PLTTPLKASSSIQLSTRPSLADDEH----KPIDHSYISKILLSKDWFLLLNHEFKAKRIV 120

Query: 121 LAPQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSV 180
           L+ QFVVSILQNQ+NPLNAIRFYIWVSN DP L K Q I+GVLGRNLYREGPDRPVLLSV
Sbjct: 121 LSLQFVVSILQNQDNPLNAIRFYIWVSNADPLLVKGQVIQGVLGRNLYREGPDRPVLLSV 180

Query: 181 DLLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDAL 240
           DLLQQIKESGLKVT+ELLCIL GSWGRLGLAKYCVEVFGQI  LGLNPTTRLYNAVIDAL
Sbjct: 181 DLLQQIKESGLKVTEELLCILFGSWGRLGLAKYCVEVFGQIGLLGLNPTTRLYNAVIDAL 240

Query: 241 IKSNSLDLA 243
           IKSNSLDLA
Sbjct: 241 IKSNSLDLA 245

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BLAST of Carg23743 vs. NCBI nr
Match: XP_022137852.1 (putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137853.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137854.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137856.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137857.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137858.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137859.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137860.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137861.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia] >XP_022137862.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Momordica charantia])

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-81
Identity = 169/253 (66.80%), Postives = 193/253 (76.28%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLR------NQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXX 60
           M+GL SS  RATPVLR      N+ Q   +TI    +++PS                   
Sbjct: 1   MRGLPSSAFRATPVLRNRLTSKNRRQFPSNTIQRTSKQSPS------------------- 60

Query: 61  XXXXXXLTSQLENTSLIRHP-----TREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKA 120
                 L + L+N +L+R P       + S +L+PIDHSYISR+L SKDW LLLNHEFKA
Sbjct: 61  RGNPAPLITHLKNPNLVRLPNPSPLADKLSSSLEPIDHSYISRVLSSKDWLLLLNHEFKA 120

Query: 121 KRLVLAPQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPV 180
            R+VLAPQFVVSILQNQENPLNAIRFYIWVSN+DP LAKKQ+IRGVLGRNLYR+GPDRP+
Sbjct: 121 SRIVLAPQFVVSILQNQENPLNAIRFYIWVSNVDPLLAKKQAIRGVLGRNLYRKGPDRPM 180

Query: 181 LLSVDLLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAV 240
           LLSVDLLQ+IKESGLKVT+ELLCIL+GSWGRLGLAKYCVEVFGQI F+GLNP+TRLYNAV
Sbjct: 181 LLSVDLLQEIKESGLKVTEELLCILIGSWGRLGLAKYCVEVFGQIGFMGLNPSTRLYNAV 234

Query: 241 IDALIKSNSLDLA 243
           IDALIKSNSLDLA
Sbjct: 241 IDALIKSNSLDLA 234

[Close]

BLAST of Carg23743 vs. TAIR10
Match: AT3G16890.1 (pentatricopeptide (PPR) domain protein 40)

HSP 1 Score: 213.4 bits (542), Expect = 4.4e-55
Identity = 102/181 (56.35%), Postives = 140/181 (77.35%), Query Frame = 0


Query: 67  NTSLIRHPTREHSLN-----LKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVVS 126
           N S   +P    +LN       P++  YIS+++  KDWFL+LN EF   R+ L  +FV+S
Sbjct: 22  NASTSVNPKLSKTLNSSGKPTNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVIS 81

Query: 127 ILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIKE 186
           +LQNQ+NPL+++RFY+WVSN DP  AK QS++ VLG  L+R+G   P+LLS++LL++I++
Sbjct: 82  VLQNQDNPLHSLRFYLWVSNFDPVYAKDQSLKSVLGNALFRKG---PLLLSMELLKEIRD 141

Query: 187 SGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLDL 243
           SG +++ EL+C+L+GSWGRLGLAKYC +VF QISFLG+ P+TRLYNAVIDAL+KSNSLDL
Sbjct: 142 SGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDL 199

[Close]

BLAST of Carg23743 vs. TAIR10
Match: AT1G79540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-07
Identity = 29/122 (23.77%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 114 LAPQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSV 173
           L+   + S+++++ N     RF+IW S  +  L  ++S   V+       G D    L  
Sbjct: 58  LSKNIITSVIKDEVNRQLGFRFFIWASRRE-RLRSRESFGLVIDMLSEDNGCD----LYW 117

Query: 174 DLLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDAL 233
             L+++K  G+ V     C+L+ ++ ++G+A+  VE FG++      P    YN ++  +
Sbjct: 118 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVM 174

Query: 234 IK 236
           ++
Sbjct: 178 MR 174

[Close]

BLAST of Carg23743 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-05
Identity = 22/67 (32.84%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 175 LLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALI 234
           LLQQ+K  G   +++L   ++  + ++GLA+  VE+F +I   G +P+ ++YN V+D L+
Sbjct: 98  LLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLL 157

Query: 235 KSNSLDL 242
             N + +
Sbjct: 158 GENRIQM 164

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BLAST of Carg23743 vs. Swiss-Prot
Match: sp|Q9LSQ2|PP239_ARATH (Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR40 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 8.0e-54
Identity = 102/181 (56.35%), Postives = 140/181 (77.35%), Query Frame = 0


Query: 67  NTSLIRHPTREHSLN-----LKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLAPQFVVS 126
           N S   +P    +LN       P++  YIS+++  KDWFL+LN EF   R+ L  +FV+S
Sbjct: 22  NASTSVNPKLSKTLNSSGKPTNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVIS 81

Query: 127 ILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDLLQQIKE 186
           +LQNQ+NPL+++RFY+WVSN DP  AK QS++ VLG  L+R+G   P+LLS++LL++I++
Sbjct: 82  VLQNQDNPLHSLRFYLWVSNFDPVYAKDQSLKSVLGNALFRKG---PLLLSMELLKEIRD 141

Query: 187 SGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIKSNSLDL 243
           SG +++ EL+C+L+GSWGRLGLAKYC +VF QISFLG+ P+TRLYNAVIDAL+KSNSLDL
Sbjct: 142 SGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDL 199

[Close]

BLAST of Carg23743 vs. Swiss-Prot
Match: sp|Q9SAJ5|PP133_ARATH (Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana OX=3702 GN=At1g79540 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-06
Identity = 29/122 (23.77%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 114 LAPQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSV 173
           L+   + S+++++ N     RF+IW S  +  L  ++S   V+       G D    L  
Sbjct: 58  LSKNIITSVIKDEVNRQLGFRFFIWASRRE-RLRSRESFGLVIDMLSEDNGCD----LYW 117

Query: 174 DLLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDAL 233
             L+++K  G+ V     C+L+ ++ ++G+A+  VE FG++      P    YN ++  +
Sbjct: 118 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVM 174

Query: 234 IK 236
           ++
Sbjct: 178 MR 174

[Close]

BLAST of Carg23743 vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-04
Identity = 22/67 (32.84%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 175 LLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALI 234
           LLQQ+K  G   +++L   ++  + ++GLA+  VE+F +I   G +P+ ++YN V+D L+
Sbjct: 98  LLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLL 157

Query: 235 KSNSLDL 242
             N + +
Sbjct: 158 GENRIQM 164

[Close]

BLAST of Carg23743 vs. TrEMBL
Match: tr|A0A1S3AXI6|A0A1S3AXI6_CUCME (putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103483881 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 8.0e-83
Identity = 173/249 (69.48%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPS-XXXXXXXXXXXXXXXXXXXXXXXX 60
           M+G  S   R TPVLRN+P +AY+ IN +RR+ PS                         
Sbjct: 1   MRGFLSLAFRETPVLRNRPLQAYTPINNHRRQFPSDSIQRTSKQSSFNNIVEAPSRGNPS 60

Query: 61  XLTSQLENTSLIRHPTR------EHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLV 120
            LT+ L+ +S I+  TR      EH    KPIDHSYIS+ILLSKDWFLLLNHEFKAKR+V
Sbjct: 61  PLTTPLKASSSIQLSTRPSLADDEH----KPIDHSYISKILLSKDWFLLLNHEFKAKRIV 120

Query: 121 LAPQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSV 180
           L+ QFVVSILQNQ+NPLNAIRFYIWVSN DP L K Q I+GVLGRNLYREGPDRPVLLSV
Sbjct: 121 LSLQFVVSILQNQDNPLNAIRFYIWVSNADPLLVKGQVIQGVLGRNLYREGPDRPVLLSV 180

Query: 181 DLLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDAL 240
           DLLQQIKESGLKVT+ELLCIL GSWGRLGLAKYCVEVFGQI  LGLNPTTRLYNAVIDAL
Sbjct: 181 DLLQQIKESGLKVTEELLCILFGSWGRLGLAKYCVEVFGQIGLLGLNPTTRLYNAVIDAL 240

Query: 241 IKSNSLDLA 243
           IKSNSLDLA
Sbjct: 241 IKSNSLDLA 245

[Close]

BLAST of Carg23743 vs. TrEMBL
Match: tr|A0A0A0L5W1|A0A0A0L5W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165700 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 9.7e-81
Identity = 189/248 (76.21%), Postives = 208/248 (83.87%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+G  SS  RATPVLRN+P +AY+           XXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 1   MRGFPSSAFRATPVLRNRPLQAYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSP 60

Query: 61  LTSQLENTSLIRHPT------REHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVL 120
           LT+ L+  S I+  T       +HSL+LKPID SYIS+ILLSKDWFLLLNHEFKAKR+VL
Sbjct: 61  LTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKDWFLLLNHEFKAKRVVL 120

Query: 121 APQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVD 180
           +PQFVVSILQNQ+NPL+AIRFYIWVSN+DP L KKQ I+GVL RNL+REGPDRPVLLSVD
Sbjct: 121 SPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVRNLHREGPDRPVLLSVD 180

Query: 181 LLQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALI 240
           LLQQIKESGLKVT+ELLCIL GSWGRLGLA YCVEVFGQI  LGLNPTTRLYNAV+DALI
Sbjct: 181 LLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALI 240

Query: 241 KSNSLDLA 243
           KSNSLDLA
Sbjct: 241 KSNSLDLA 248

[Close]

BLAST of Carg23743 vs. TrEMBL
Match: tr|A0A2P5F608|A0A2P5F608_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_111360 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 140/247 (56.68%), Postives = 176/247 (71.26%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+G  S   RA+P LRN  Q+ Y+ I +++R++PS                         
Sbjct: 25  MRGFSSLASRASPALRNLTQKPYNQI-KFQRQSPS-----NTIPTKALNPSPPPTGKNSL 84

Query: 61  LTSQLENTS-----LIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLA 120
           L SQL+N+S       R     H  N  P DH YI++IL SKDWFLLLNHEFKAKR+ L 
Sbjct: 85  LDSQLQNSSSRIPISARKNKLSHFNNNNPTDHQYIAQILSSKDWFLLLNHEFKAKRIALN 144

Query: 121 PQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDL 180
           PQFVVS+LQNQENP ++++FY WVSNI+PSL+K +S+RGVLG  LYR G   P++L+VDL
Sbjct: 145 PQFVVSVLQNQENPSSSLKFYTWVSNINPSLSKHRSVRGVLGSILYRRG---PLVLNVDL 204

Query: 181 LQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIK 240
           +Q I +SG +VT+ELLCIL+GSWGRLGLAKYC EVFGQ+SFLGL+P+TRLYNAVIDAL+K
Sbjct: 205 VQDISKSGFRVTEELLCILIGSWGRLGLAKYCAEVFGQVSFLGLSPSTRLYNAVIDALVK 262

Query: 241 SNSLDLA 243
           +NSLDLA
Sbjct: 265 ANSLDLA 262

[Close]

BLAST of Carg23743 vs. TrEMBL
Match: tr|A0A2P5CLP2|A0A2P5CLP2_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_141380 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.2e-66
Identity = 138/247 (55.87%), Postives = 175/247 (70.85%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+G  S   RA+P +RN PQ+ Y+ I +++R++PS                         
Sbjct: 25  MRGFSSLASRASPAVRNLPQKPYNQI-KFQRQSPS-----NTIPTKALNPSPPPTGKNSL 84

Query: 61  LTSQLENTS-----LIRHPTREHSLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLA 120
           L SQL N+S       R     H     P+DH YI++IL SKDWFLLLNHEFKAKR+ L 
Sbjct: 85  LDSQLRNSSSRIPISARKNKLSHFNTNNPLDHQYIAQILSSKDWFLLLNHEFKAKRITLN 144

Query: 121 PQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDL 180
           PQFVVS+LQNQENP ++++FY WVSNI+PSL+K +S+RGVLG  LYR G   P++L+ DL
Sbjct: 145 PQFVVSVLQNQENPSSSLKFYTWVSNINPSLSKHRSVRGVLGSTLYRRG---PLVLNADL 204

Query: 181 LQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIK 240
           +Q I +SG +VT+ELLCIL+GSWGRLGLAKYC EVFGQ+SFLGL+P+TRLYNAVIDAL+K
Sbjct: 205 VQDIGKSGFRVTEELLCILIGSWGRLGLAKYCAEVFGQVSFLGLSPSTRLYNAVIDALVK 262

Query: 241 SNSLDLA 243
           +NSLDLA
Sbjct: 265 ANSLDLA 262

[Close]

BLAST of Carg23743 vs. TrEMBL
Match: tr|A0A2P4JMM7|A0A2P4JMM7_QUESU (Putative pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_43185 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.5e-65
Identity = 139/247 (56.28%), Postives = 174/247 (70.45%), Query Frame = 0


Query: 1   MKGLHSSGLRATPVLRNQPQEAYSTINEYRRRNPSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+   S   RA+P +RN P+EA++  ++ +R +PS                         
Sbjct: 1   MRVQSSLASRASPAIRNLPEEAWNK-HKLQRDSPS-----KVKSKELTNFEAPSRGNPSP 60

Query: 61  LTSQLENTSLI---RHPTREH--SLNLKPIDHSYISRILLSKDWFLLLNHEFKAKRLVLA 120
           L SQ  N +L+   + P   H   L++KPIDH YIS++L  KDWFLLLNHE K  R+VL 
Sbjct: 61  LNSQFRNPNLVSISKTPISAHKRKLSIKPIDHQYISQVLSRKDWFLLLNHEVKVGRIVLN 120

Query: 121 PQFVVSILQNQENPLNAIRFYIWVSNIDPSLAKKQSIRGVLGRNLYREGPDRPVLLSVDL 180
           PQFVVS+LQNQENPL+ ++FYIWVSNIDPS AK  ++RGVL + LYR G   PV+LSV+L
Sbjct: 121 PQFVVSLLQNQENPLHPLKFYIWVSNIDPSFAKNHAVRGVLAKTLYRNG---PVVLSVEL 180

Query: 181 LQQIKESGLKVTQELLCILLGSWGRLGLAKYCVEVFGQISFLGLNPTTRLYNAVIDALIK 240
           LQ I+ SG +V+++LL IL+GSWGRLGLAKYC EVFGQISFLGL+PTTRLYNAVIDAL+K
Sbjct: 181 LQDIRNSGFRVSEDLLVILIGSWGRLGLAKYCAEVFGQISFLGLSPTTRLYNAVIDALVK 238

Query: 241 SNSLDLA 243
           SNSLDLA
Sbjct: 241 SNSLDLA 238

The following BLAST results are available for this feature:

BLAST of Carg23743 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022975218.1	7.2e-112	88.02	putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [C...	[more]
XP_022934625.1	3.6e-111	98.35	putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [C...	[more]
XP_023539285.1	1.4e-107	95.87	putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [C...	[more]
XP_008438927.1	1.2e-82	69.48	PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitoc...	[more]
XP_022137852.1	1.3e-81	66.80	putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [M...	[more]

BLAST of Carg23743 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16890.1	4.4e-55	56.35	pentatricopeptide (PPR) domain protein 40	[more]
AT1G79540.1	3.4e-07	23.77	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G48810.1	1.1e-05	32.84	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg23743 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LSQ2\|PP239_ARATH	8.0e-54	56.35	Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS...	[more]
sp\|Q9SAJ5\|PP133_ARATH	6.2e-06	23.77	Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9M302\|PP270_ARATH	2.0e-04	32.84	Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg23743 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXI6\|A0A1S3AXI6_CUCME	8.0e-83	69.48	putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS...	[more]
tr\|A0A0A0L5W1\|A0A0A0L5W1_CUCSA	9.7e-81	76.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165700 PE=4 SV=1	[more]
tr\|A0A2P5F608\|A0A2P5F608_9ROSA	2.3e-66	56.68	Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=...	[more]
tr\|A0A2P5CLP2\|A0A2P5CLP2_PARAD	5.2e-66	55.87	Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_141380 P...	[more]
tr\|A0A2P4JMM7\|A0A2P4JMM7_QUESU	7.5e-65	56.28	Putative pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus s...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23743-RA	Carg23743-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 283..358 e-value: 7.4E-15 score: 56.9 coord: 359..456 e-value: 5.7E-11 score: 44.2 coord: 601..672 e-value: 4.2E-20 score: 74.0 coord: 457..530 e-value: 1.2E-20 score: 75.8 coord: 531..600 e-value: 1.6E-20 score: 75.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 168..282 e-value: 4.9E-22 score: 80.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 117..144 coord: 396..646
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 606..655 e-value: 3.2E-16 score: 59.1 coord: 467..515 e-value: 5.6E-14 score: 52.0 coord: 259..304 e-value: 5.1E-14 score: 52.1 coord: 536..584 e-value: 6.2E-19 score: 67.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 226..254 e-value: 0.18 score: 12.0 coord: 434..464 e-value: 0.71 score: 10.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 469..503 e-value: 2.6E-9 score: 34.7 coord: 294..328 e-value: 2.2E-7 score: 28.6 coord: 539..573 e-value: 2.7E-9 score: 34.6 coord: 574..608 e-value: 8.4E-7 score: 26.8 coord: 644..678 e-value: 5.3E-10 score: 36.9 coord: 609..642 e-value: 9.6E-9 score: 32.9 coord: 504..538 e-value: 6.4E-6 score: 24.0 coord: 225..257 e-value: 1.3E-5 score: 23.1 coord: 259..293 e-value: 4.4E-8 score: 30.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 467..501 score: 12.178
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 642..676 score: 12.891
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 222..256 score: 9.482
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 327..361 score: 6.051
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 187..221 score: 5.831
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 607..641 score: 12.726
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 502..536 score: 12.485
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 257..291 score: 12.869
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 432..466 score: 7.596
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 362..396 score: 7.695
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 292..326 score: 11.257
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 397..431 score: 8.901
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 537..571 score: 12.321
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 572..606 score: 11.762
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..63
None	No IPR available	PANTHER	PTHR24015:SF1057	SUBFAMILY NOT NAMED	coord: 65..683
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 65..683

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23743	Csa3G165700	Cucumber (Chinese Long) v2	carcuB0967
Carg23743	MELO3C006701	Melon (DHL92) v3.5.1	carmeB0934
Carg23743	CSPI03G14850	Wild cucumber (PI 183967)	carcpiB0989
Carg23743	Cucsa.252670	Cucumber (Gy14) v1	carcgyB1072
Carg23743	CmaCh00G004290	Cucurbita maxima (Rimu)	carcmaB1303
Carg23743	CmaCh06G015540	Cucurbita maxima (Rimu)	carcmaB1307
Carg23743	CmoCh06G015530	Cucurbita moschata (Rifu)	carcmoB1276
Carg23743	Lsi05G015790	Bottle gourd (USVL1VR-Ls)	carlsiB869
Carg23743	Cp4.1LG08g05250	Cucurbita pepo (Zucchini)	carcpeB1321
Carg23743	CsGy3G014960	Cucumber (Gy14) v2	carcgybB0939
Carg23743	MELO3C006701.2	Melon (DHL92) v3.6.1	carmedB0940
Carg23743	CsaV3_3G015050	Cucumber (Chinese Long) v3	carcucB0995
Carg23743	Bhi01G000768	Wax gourd	carwgoB1105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23743	Silver-seed gourd	carcarB318
Carg23743	Cucurbita maxima (Rimu)	carcmaB1304
Carg23743	Cucurbita maxima (Rimu)	carcmaB1305
Carg23743	Cucurbita moschata (Rifu)	carcmoB1273
Carg23743	Cucurbita pepo (Zucchini)	carcpeB1320
Carg23743	Watermelon (Charleston Gray)	carwcgB0929
Carg23743	Watermelon (97103) v1	carwmB0953
Carg23743	Watermelon (97103) v2	carwmbB1003