CmaCh04G020470 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G020470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Fiber protein Fb34
Location	Cma_Chr04 : 13395544 .. 13398525 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCACGCTTTCTCTCATATGTATAAAATTCCGCGTGTAATTCACGTGCTAAAACCCCGCGTGGGATCTAACCAATCGGTCCTTTTCCTGACAACTTTCACGGCTTTTTTCACACCCTGCCGCCCACTATGTACAAAGGATTGCCCACACTTTTCTCACTCGCAGTCTTAAGCTCTTGGGAGCCTCTCTCAGTTCTCCCTGGTTGCGATTTGTGAGAGAAATGGAAGGCAAAGGGTCGACTCTGGTTCATCTTCTTGTGGTGGTTTTGTGTTTAGTAGCTTTTGGGTTCTCCATTGCTGCCGAGAGACGAAGAAGTGTGGTATGAGCCAACCCCCCTTTTTGAAATTTTGCTTTTACTGTTCGAATTATTTGTGCTTTTATGAATGTGGGGTTTTCTGAGCTGGAAAGTTTTTGCTTCTTTGTGATTTGATGTTGTTCTTGGATTGTTCTTGAATGGAGATTTGTGCTGAAATGTTTATTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTATGTTTACTGCATTTTGAATCTTGTTTTCAATGGAGAGATGTGATTCATTATTTGATCTATAAATTAGTTGTCATTTGGATTTGGTTGGGCATCTTTTATCTAATACACTTCAGAAGTATCATCACGTCTGTATAACAATCAGGACCATTTAGCTTTGCATTTTGTATAATTCTGAAAGATGTGTAAAGTTAAGGCATGAAAATTGGAAACAGCACAAATTTACCACTTGGTTGTACTCCCTGGTGAAGTAAATTGAATATGCATTATGATGAGGGTTATGTATATACTTTAACAGGGGACTCTGTTTGAAGACAAGGAAAGGAACGCGACCTACTGTGTGTACGACTCGGATGTGGCAACTGGTTATGGTGTAGGAGGTTTCTTATTTCTTCTCTCTGGTGAATCATTGCTGATGGGTGTCACAAAGTGCATGTGTTTTGGGAGACCTTTAACCCCGGGAGGAAATCGGGCATGGGCTATTATTTACTTTTTATCCTCATGGTGAGAATTTCTTCTTCTTCCTTTTGTTATTCTAAAAGAACCACAATAATGTGCTGCTATTTGTGGAACAAATACTCTGTTATGCTCTTACCTCCTATGTTTTTACTACCATACATCTTATTCTTAGCAAGTTTGCATTCAGTTCTCAATATTTTTTTTTTACATGTTGCTAGGTTTTTGCTCTGTAAGTTCACCTTTGAGAGGTACATTAGTACGATGAAAACTCTAGCCAATTGGATGTAAGAACCCTTATGGATATGCAAACCCCTAGATCACAAATACCAAAGCTTTCAAATCAAGATGGTTTTATTCCAAATGATATGAAACTCTTGGAAATTCAATCTACCAACCTTATTGAAGAATAAAGCCTTTAGATTTAAAATATCCAAGAATCCCAAAACGTTAAGGAATCAGCCAAGGGAAATTAAAATCTAGATGACCTAGTTGATCAAATATCTTAAGGTAAGGAATGTAGCTCTAGGCTAAAAAAACGCACAAATGCTCTTTTTACTACTTTTTTCTAGCCTCTCTTACAAAGACAACATACATGACTTTATATACCCTCAAATGAAACTTTTAACCTTCCCGGAGACGTTTCAAGAGTTGTAACTTTCATAGTTTATAACAATAATTAATCATCATGTAAATGCATCTAAAAAGTAAATAAAAAATCTTAAAACTAAAAATACATGAAACACTATAGATCCAGAAATATTAGATTTCAATCATCCACCTAAGAATTTGTAACCATCCTGGATAAATGAAGCTCCACTTGAGGGAGCTTGAATCTATTGTTGCATGGATGGAGCTTGATTCTTCTTTAATGTGGCATTAAATGCAAACTTAAGTTGAACTTTAACAAATTTGACTTCCTTTAAGTTTATATTGCATGATTGAGATGTTTTGGTTCTTATCATAACCATTCTTAAAATTATAAAATATTTCTTCTAGTCTCGAGTCATTGCTGTGTATAGACACATAAACAAGTTCCACAATCCTGTGTGTGGCATTGATATTGTTTAAGGTACTACAAGAAATGTGCTACCCTTTTTCCTCTCTGCCATTTGAAATTCGAGGAGGAAGATAATTGATGTATTTAAAGTTTCCATGGCTGTTAAACTCCATGCCTTGATATGTGGGTTTTCTTTTCTACGGATCTGTTGATAGCATAGGTTAAATAAATGTAGCTGACCCAAGTTACGAAACTCGTATTTTATGCTACCTATAAACATTTGCTGATCATAGATTTATATGAACTTCTATTTCTAGTAGGCCCTTCCACCATTTTCTGCAAATATAACTCAAACTTGTTTAGGCGATGAGCCACACCTCAACTACAGGCTTTGTTTTTGCTCAAGACTAAAATCTTTTTAAACATCTTACAAATCTTCAGGGCAACATTTATAGTAGCGGAAGCGTGTCTAATCGCGGGTGCAGCGAAAAATGCATACCATACAAAGTATCGAGGAATGATATATGCTCAAAACTTAGCATGTGAAACATTAAGGAAAGGAGTGTTCATTGCTGGGGCAGTGTTTGTGGTTGCAACCATGATTCTTAATGTGTATTTTTACATGTACTTCACCAAGGCAACATCTTCTTCTCAAGCATCGCACAAAGCGAAGCGTTCGAGTTCAACGGTTGGGATGACAGAGTATGCCTAAATTCAATTCAATTCAAATGTGATAGGCTGGTTAAAGCTTCCATCATTGGCCTTCATTGGTGGGTTGGTGATGTTTATGATTATTACTGATTGTGATATAAAGTTTCATAGTCACTTTTTGTGGTTAAGATATGTAAACATGTCATGTAAGAACAGAAAATGGTTTGCTCAATATTCTGCAGCAATTTTCAAGTGGTTTGAAGCTGAAAATTTGAAGGGTATATTGATTTATATATGGTGCTTTTGAAGCAGACTTCAGAATGCTGCTCTGTCTGCTCATATTCCATTTCAATTGTTTTCATTGTCG

mRNA sequence

CAGCACGCTTTCTCTCATATGTATAAAATTCCGCGTGTAATTCACGTGCTAAAACCCCGCGTGGGATCTAACCAATCGGTCCTTTTCCTGACAACTTTCACGGCTTTTTTCACACCCTGCCGCCCACTATGTACAAAGGATTGCCCACACTTTTCTCACTCGCAGTCTTAAGCTCTTGGGAGCCTCTCTCAGTTCTCCCTGGTTGCGATTTGTGAGAGAAATGGAAGGCAAAGGGTCGACTCTGGTTCATCTTCTTGTGGTGGTTTTGTGTTTAGTAGCTTTTGGGTTCTCCATTGCTGCCGAGAGACGAAGAAGTGTGGGGACTCTGTTTGAAGACAAGGAAAGGAACGCGACCTACTGTGTGTACGACTCGGATGTGGCAACTGGTTATGGTGTAGGAGGTTTCTTATTTCTTCTCTCTGGTGAATCATTGCTGATGGGTGTCACAAAGTGCATGTGTTTTGGGAGACCTTTAACCCCGGGAGGAAATCGGGCATGGGCTATTATTTACTTTTTATCCTCATGGGCAACATTTATAGTAGCGGAAGCGTGTCTAATCGCGGGTGCAGCGAAAAATGCATACCATACAAAGTATCGAGGAATGATATATGCTCAAAACTTAGCATGTGAAACATTAAGGAAAGGAGTGTTCATTGCTGGGGCAGTGTTTGTGGTTGCAACCATGATTCTTAATGTGTATTTTTACATGTACTTCACCAAGGCAACATCTTCTTCTCAAGCATCGCACAAAGCGAAGCGTTCGAGTTCAACGGTTGGGATGACAGAGTATGCCTAAATTCAATTCAATTCAAATGTGATAGGCTGGTTAAAGCTTCCATCATTGGCCTTCATTGGTGGGTTGGTGATGTTTATGATTATTACTGATTGTGATATAAAGTTTCATAGTCACTTTTTGTGGTTAAGATATGTAAACATGTCATGTAAGAACAGAAAATGGTTTGCTCAATATTCTGCAGCAATTTTCAAGTGGTTTGAAGCTGAAAATTTGAAGGGTATATTGATTTATATATGGTGCTTTTGAAGCAGACTTCAGAATGCTGCTCTGTCTGCTCATATTCCATTTCAATTGTTTTCATTGTCG

Coding sequence (CDS)

ATGGAAGGCAAAGGGTCGACTCTGGTTCATCTTCTTGTGGTGGTTTTGTGTTTAGTAGCTTTTGGGTTCTCCATTGCTGCCGAGAGACGAAGAAGTGTGGGGACTCTGTTTGAAGACAAGGAAAGGAACGCGACCTACTGTGTGTACGACTCGGATGTGGCAACTGGTTATGGTGTAGGAGGTTTCTTATTTCTTCTCTCTGGTGAATCATTGCTGATGGGTGTCACAAAGTGCATGTGTTTTGGGAGACCTTTAACCCCGGGAGGAAATCGGGCATGGGCTATTATTTACTTTTTATCCTCATGGGCAACATTTATAGTAGCGGAAGCGTGTCTAATCGCGGGTGCAGCGAAAAATGCATACCATACAAAGTATCGAGGAATGATATATGCTCAAAACTTAGCATGTGAAACATTAAGGAAAGGAGTGTTCATTGCTGGGGCAGTGTTTGTGGTTGCAACCATGATTCTTAATGTGTATTTTTACATGTACTTCACCAAGGCAACATCTTCTTCTCAAGCATCGCACAAAGCGAAGCGTTCGAGTTCAACGGTTGGGATGACAGAGTATGCCTAA

Protein sequence

MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGGFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAYHTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRSSSTVGMTEYA

Homology

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BLAST of CmaCh04G020470 vs. TrEMBL
Match: A0A0A0KQ16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G373210 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.1e-92
Identity = 176/191 (92.15%), Postives = 182/191 (95.29%), Query Frame = 1


Query: 1   MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVG 60
           MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDK+RNATYCVY+SDVATGYGVG
Sbjct: 1   MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKQRNATYCVYESDVATGYGVG 60

Query: 61  GFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNA 120
            FLFLLSG+SLLMGVTKCMCFG+PLTPGGNRAW IIYFLSS ATF+VAEACLIAGA KNA
Sbjct: 61  AFLFLLSGQSLLMGVTKCMCFGKPLTPGGNRAWTIIYFLSSGATFLVAEACLIAGATKNA 120

Query: 121 YHTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKR 180
           YHTKYRGMIYAQNL CETLRKGVFIAGAVFVVATMILNVY+YMYFTKAT SSQ SHKA R
Sbjct: 121 YHTKYRGMIYAQNLPCETLRKGVFIAGAVFVVATMILNVYYYMYFTKAT-SSQTSHKANR 180

Query: 181 SSSTVGMTEYA 192
           SSSTVGMT YA
Sbjct: 181 SSSTVGMTGYA 190

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BLAST of CmaCh04G020470 vs. TrEMBL
Match: D7T946_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03560 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.0e-83
Identity = 160/190 (84.21%), Postives = 175/190 (92.11%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGKGSTLVHL+VVVL LVAFGF++AAERRRSVGT+  D +RNATYCVY+SDVATGYGVGG
Sbjct: 3   EGKGSTLVHLVVVVLSLVAFGFAVAAERRRSVGTIVTD-DRNATYCVYNSDVATGYGVGG 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLL+ ESLLMGVTKCMCFGRPL PGGNRAW+IIYF+SSW TF+VAEACLIAGA KNAY
Sbjct: 63  FLFLLTSESLLMGVTKCMCFGRPLAPGGNRAWSIIYFVSSWMTFLVAEACLIAGATKNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKYRGMIYAQN +CETLRKGVFIAGAVFVVATMILNVY+YMYF+KAT  +QA  KA R+
Sbjct: 123 HTKYRGMIYAQNFSCETLRKGVFIAGAVFVVATMILNVYYYMYFSKAT-DTQAVRKANRA 182

Query: 182 SSTVGMTEYA 192
           SSTVGMT YA
Sbjct: 183 SSTVGMTGYA 190

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BLAST of CmaCh04G020470 vs. TrEMBL
Match: M5XF15_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011926mg PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.6e-83
Identity = 156/190 (82.11%), Postives = 172/190 (90.53%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGKGSTLVHLLV+VL LVAFGF+IAAER+RSVG + +D   N TYCVY+SDVATGYGVGG
Sbjct: 3   EGKGSTLVHLLVIVLSLVAFGFAIAAERQRSVGRIEKDDRTNETYCVYNSDVATGYGVGG 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLLSGESLLMG+TKCMCFGRPL PGGNRAW+IIYF+SSW TF+VAEACLIAGA KNAY
Sbjct: 63  FLFLLSGESLLMGITKCMCFGRPLAPGGNRAWSIIYFVSSWTTFLVAEACLIAGATKNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKYRGMIYAQN +CE LRKGVFI+GAVFVV TMILNVY+YMYFTKAT ++QA+HKA  S
Sbjct: 123 HTKYRGMIYAQNFSCEALRKGVFISGAVFVVVTMILNVYYYMYFTKAT-TTQAAHKANHS 182

Query: 182 SSTVGMTEYA 192
           SSTVGM  YA
Sbjct: 183 SSTVGMAGYA 191

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BLAST of CmaCh04G020470 vs. TrEMBL
Match: A0A061E778_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009876 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-82
Identity = 157/190 (82.63%), Postives = 173/190 (91.05%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGKGSTLVHLLVVVL LVAFGF+IAAERRRSVGT+ +D   N TYCVY+SDVATGYGVG 
Sbjct: 3   EGKGSTLVHLLVVVLSLVAFGFAIAAERRRSVGTIVKDDISNTTYCVYNSDVATGYGVGA 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLLSGESLLMGVTKCMCFGRPL PG +RAW+IIYF+SSW TF+VAEACLIAGA +NAY
Sbjct: 63  FLFLLSGESLLMGVTKCMCFGRPLAPGSDRAWSIIYFVSSWLTFLVAEACLIAGATRNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKYRGMIYAQN +CETLRKGVF+AGAVFVVATMILNVY+YMY TKAT+++ A HKA R+
Sbjct: 123 HTKYRGMIYAQNFSCETLRKGVFVAGAVFVVATMILNVYYYMYVTKATTAAPA-HKANRA 182

Query: 182 SSTVGMTEYA 192
           SSTVGMT YA
Sbjct: 183 SSTVGMTGYA 191

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BLAST of CmaCh04G020470 vs. TrEMBL
Match: V7C938_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G035600g PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-82
Identity = 156/190 (82.11%), Postives = 171/190 (90.00%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGKGSTLVHLLVVVL LVAFGF+IAAERRRSVGT+++ ++ N TYC Y SDVATGYGVG 
Sbjct: 3   EGKGSTLVHLLVVVLSLVAFGFAIAAERRRSVGTMYKIEKTNETYCSYSSDVATGYGVGA 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAW+IIYFLSSW TF+VAEACLIAGA KNAY
Sbjct: 63  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWITFLVAEACLIAGATKNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKYRGM+YAQN +CE LRKGVF+AGAVF+VATMILNVY+YMYFTKA  ++  SHKA R 
Sbjct: 123 HTKYRGMVYAQNFSCEALRKGVFVAGAVFIVATMILNVYYYMYFTKAI-TTPVSHKANRV 182

Query: 182 SSTVGMTEYA 192
           SSTVGM  YA
Sbjct: 183 SSTVGMAGYA 191

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BLAST of CmaCh04G020470 vs. TAIR10
Match: AT1G13380.1 (AT1G13380.1 Protein of unknown function (DUF1218))

HSP 1 Score: 273.9 bits (699), Expect = 7.7e-74
Identity = 138/190 (72.63%), Postives = 157/190 (82.63%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGK STLV +LVV L LVAFGFSIAAERRRS+G   +D   N T+CVYDSDVATGYGVG 
Sbjct: 3   EGKASTLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGA 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLLS ESLLM VTKCMCFGRPL PG +RAW+IIYF+SSW TF+VAEAC+IAGA KNAY
Sbjct: 63  FLFLLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKY   + +Q  +C +LRKG+FIAGAVF+VATM+LNVY+YMYFTK+ SS  A HKA RS
Sbjct: 123 HTKY---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKSVSSPPA-HKANRS 182

Query: 182 SSTVGMTEYA 192
           SS +GM  YA
Sbjct: 183 SSNIGMAGYA 188

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BLAST of CmaCh04G020470 vs. TAIR10
Match: AT4G27435.1 (AT4G27435.1 Protein of unknown function (DUF1218))

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-43
Identity = 84/167 (50.30%), Postives = 115/167 (68.86%), Query Frame = 1


Query: 6   STLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGGFLFL 65
           S +V  +V V  L+AFG ++AAE+RRS   + +D E    YCVYDSD ATGYGVG FLF 
Sbjct: 3   SKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFLFS 62

Query: 66  LSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAYHTKY 125
           ++ + L+M V++C C G+PL PGG+RA A+I F+ SW  F++AE CL+AG+ +NAYHTKY
Sbjct: 63  VASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHTKY 122

Query: 126 RGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSS 173
           R M       C+TLRKGVF AGA FV    I++ ++Y ++  A  +S
Sbjct: 123 RTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEAS 169

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BLAST of CmaCh04G020470 vs. TAIR10
Match: AT1G61065.1 (AT1G61065.1 Protein of unknown function (DUF1218))

HSP 1 Score: 161.0 bits (406), Expect = 7.3e-40
Identity = 81/178 (45.51%), Postives = 119/178 (66.85%), Query Frame = 1


Query: 6   STLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGGFLFL 65
           S L+ LLV V  L+AFG ++AAE+RR+   +  +  R+ +YCVYD D+ATG GVG FL L
Sbjct: 3   SVLLLLLVFVFDLIAFGLAVAAEQRRTTWQISRES-RDLSYCVYDKDIATGLGVGSFLVL 62

Query: 66  LSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAYHTKY 125
           L+ + L+M  ++C+C GR LTP G+R+WAI  F+++W  F +A+ CL+AG+ +NAYHTKY
Sbjct: 63  LASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHTKY 122

Query: 126 RGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRSSS 184
           R      + +C +LRKGVF AGA F+V T I++  +Y+  ++A     +     R SS
Sbjct: 123 RVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKDFQPSRDPGIRMSS 179

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BLAST of CmaCh04G020470 vs. TAIR10
Match: AT3G15480.1 (AT3G15480.1 Protein of unknown function (DUF1218))

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-39
Identity = 77/169 (45.56%), Postives = 116/169 (68.64%), Query Frame = 1


Query: 6   STLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGGFLFL 65
           S LV ++V +L L+A G +IAAE+RRSVG +  D+++   YCVY +D+AT YG G F+ L
Sbjct: 3   SKLVVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFVLL 62

Query: 66  LSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAYHTKY 125
              + L+M  ++C C G+ L PGG+RA AII FL  W  F++AE CL+A + +NAYHT+Y
Sbjct: 63  FVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHTQY 122

Query: 126 RGMIYAQN-LACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQ 174
           R M   ++  +CE +RKGVF AGA F + T I++ ++Y+ +++A  + Q
Sbjct: 123 RKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDAYQ 171

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BLAST of CmaCh04G020470 vs. TAIR10
Match: AT1G52910.1 (AT1G52910.1 Protein of unknown function (DUF1218))

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-38
Identity = 77/172 (44.77%), Postives = 113/172 (65.70%), Query Frame = 1


Query: 6   STLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGGFLFL 65
           S LV ++V +L L+A G +IAAE+RRSVG +  D E+   +C Y SD+AT YG G F+ L
Sbjct: 3   SKLVIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLL 62

Query: 66  LSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAYHTKY 125
              + ++M  ++C C G+ L PGG+RA  I+ FL  W  F++AE CL+AG+ +NAYHT Y
Sbjct: 63  FISQVIIMVASRCFCCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTY 122

Query: 126 RGMIYAQN-LACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASH 177
           R M   +N  +CE +RKGVF AGA F + T I++ ++Y+ +++A    Q  H
Sbjct: 123 RRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARDGYQTPH 174

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BLAST of CmaCh04G020470 vs. NCBI nr
Match: gi|659131649|ref|XP_008465787.1| (PREDICTED: uncharacterized protein LOC103503388 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 7.0e-93
Identity = 178/191 (93.19%), Postives = 183/191 (95.81%), Query Frame = 1


Query: 1   MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVG 60
           MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDK+RNATYCVY+SDVATGYGVG
Sbjct: 1   MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKQRNATYCVYESDVATGYGVG 60

Query: 61  GFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNA 120
            FLFLLSG+SLLMGVTKCMCFGRPLTPGGNRAW IIYFLSS ATF+VAEACLIAGA KNA
Sbjct: 61  AFLFLLSGQSLLMGVTKCMCFGRPLTPGGNRAWTIIYFLSSGATFLVAEACLIAGATKNA 120

Query: 121 YHTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKR 180
           YHTKYRGMIYAQNL CETLRKGVFIAGAVFVVATMILNVY+YMYFTKAT SSQASHKA R
Sbjct: 121 YHTKYRGMIYAQNLPCETLRKGVFIAGAVFVVATMILNVYYYMYFTKAT-SSQASHKANR 180

Query: 181 SSSTVGMTEYA 192
           SSSTVGMT YA
Sbjct: 181 SSSTVGMTGYA 190

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BLAST of CmaCh04G020470 vs. NCBI nr
Match: gi|449445144|ref|XP_004140333.1| (PREDICTED: uncharacterized protein LOC101221296 [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 4.5e-92
Identity = 176/191 (92.15%), Postives = 182/191 (95.29%), Query Frame = 1


Query: 1   MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVG 60
           MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDK+RNATYCVY+SDVATGYGVG
Sbjct: 1   MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKQRNATYCVYESDVATGYGVG 60

Query: 61  GFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNA 120
            FLFLLSG+SLLMGVTKCMCFG+PLTPGGNRAW IIYFLSS ATF+VAEACLIAGA KNA
Sbjct: 61  AFLFLLSGQSLLMGVTKCMCFGKPLTPGGNRAWTIIYFLSSGATFLVAEACLIAGATKNA 120

Query: 121 YHTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKR 180
           YHTKYRGMIYAQNL CETLRKGVFIAGAVFVVATMILNVY+YMYFTKAT SSQ SHKA R
Sbjct: 121 YHTKYRGMIYAQNLPCETLRKGVFIAGAVFVVATMILNVYYYMYFTKAT-SSQTSHKANR 180

Query: 181 SSSTVGMTEYA 192
           SSSTVGMT YA
Sbjct: 181 SSSTVGMTGYA 190

[Close]

BLAST of CmaCh04G020470 vs. NCBI nr
Match: gi|694311229|ref|XP_009356779.1| (PREDICTED: uncharacterized protein LOC103947586 [Pyrus x bretschneideri])

HSP 1 Score: 322.8 bits (826), Expect = 4.1e-85
Identity = 162/190 (85.26%), Postives = 176/190 (92.63%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGKGSTLVHLLVVVL LVAFGF+IAAER+RSVG +  D + N TYCVY+SDVATGYGVGG
Sbjct: 3   EGKGSTLVHLLVVVLSLVAFGFAIAAERQRSVGEIRTDVQTNQTYCVYNSDVATGYGVGG 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLLSGESLLMGVTKCMCFGRPL PGGNRAW+IIYF+SSWATF+VAEACLIAGA KNAY
Sbjct: 63  FLFLLSGESLLMGVTKCMCFGRPLAPGGNRAWSIIYFVSSWATFLVAEACLIAGATKNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKYRGMIYAQN +CE LRKGVFI+GAVFVVATMILNVY+YMYFTKAT ++QA+HKA RS
Sbjct: 123 HTKYRGMIYAQNFSCEALRKGVFISGAVFVVATMILNVYYYMYFTKAT-AAQATHKANRS 182

Query: 182 SSTVGMTEYA 192
           SSTVGMT YA
Sbjct: 183 SSTVGMTGYA 191

[Close]

BLAST of CmaCh04G020470 vs. NCBI nr
Match: gi|658008952|ref|XP_008339673.1| (PREDICTED: uncharacterized protein LOC103402700 [Malus domestica])

HSP 1 Score: 321.6 bits (823), Expect = 9.1e-85
Identity = 161/190 (84.74%), Postives = 175/190 (92.11%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGKGSTLVHLLVVVL LVAFGF+IAAER+RSVG +  D + N TYCVY+SDVATGYGVGG
Sbjct: 3   EGKGSTLVHLLVVVLSLVAFGFAIAAERQRSVGEIRTDVQXNQTYCVYNSDVATGYGVGG 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLLSGESLLMGVTKCMCFGRPL PGGNRAW+IIYF SSWATF+VAEACLIAGA KNAY
Sbjct: 63  FLFLLSGESLLMGVTKCMCFGRPLAPGGNRAWSIIYFXSSWATFLVAEACLIAGATKNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKYRGMIYAQN +CE LRKGVF++GAVFVVATMILNVY+YMYFTKAT ++QA+HKA RS
Sbjct: 123 HTKYRGMIYAQNFSCEALRKGVFVSGAVFVVATMILNVYYYMYFTKAT-AAQATHKANRS 182

Query: 182 SSTVGMTEYA 192
           SSTVGMT YA
Sbjct: 183 SSTVGMTGYA 191

[Close]

BLAST of CmaCh04G020470 vs. NCBI nr
Match: gi|694331172|ref|XP_009356267.1| (PREDICTED: uncharacterized protein LOC103947134 [Pyrus x bretschneideri])

HSP 1 Score: 318.5 bits (815), Expect = 7.7e-84
Identity = 160/190 (84.21%), Postives = 174/190 (91.58%), Query Frame = 1


Query: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGG 61
           EGKGSTLVHLLVVVL LVAFGF+IAAER+RSVG +  D + N TYCVY+SDVATGYGVGG
Sbjct: 3   EGKGSTLVHLLVVVLSLVAFGFAIAAERQRSVGEIRTDVQTNETYCVYNSDVATGYGVGG 62

Query: 62  FLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAY 121
           FLFLLSGESLLMGVTKCMCFGRPL PGGNRAW+IIYF+SSW TF+VAEACLIAGA KNAY
Sbjct: 63  FLFLLSGESLLMGVTKCMCFGRPLAPGGNRAWSIIYFISSWTTFLVAEACLIAGATKNAY 122

Query: 122 HTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYFYMYFTKATSSSQASHKAKRS 181
           HTKYR MIYAQN +CE LRKGVFI+GAVFVVATMILNVY+YMYFTKAT ++QA+HKA RS
Sbjct: 123 HTKYREMIYAQNFSCEALRKGVFISGAVFVVATMILNVYYYMYFTKAT-AAQAAHKANRS 182

Query: 182 SSTVGMTEYA 192
           SSTVGMT YA
Sbjct: 183 SSTVGMTGYA 191

The following BLAST results are available for this feature:

BLAST of CmaCh04G020470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ16_CUCSA	3.1e-92	92.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G373210 PE=4 SV=1	[more]
D7T946_VITVI	2.0e-83	84.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03560 PE=4 SV=...	[more]
M5XF15_PRUPE	4.6e-83	82.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011926mg PE=4 SV=1	[more]
A0A061E778_THECC	1.3e-82	82.63	Uncharacterized protein OS=Theobroma cacao GN=TCM_009876 PE=4 SV=1	[more]
V7C938_PHAVU	1.3e-82	82.11	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G035600g PE=4 SV=1	[more]

BLAST of CmaCh04G020470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13380.1	7.7e-74	72.63	Protein of unknown function (DUF1218)	[more]
AT4G27435.1	2.4e-43	50.30	Protein of unknown function (DUF1218)	[more]
AT1G61065.1	7.3e-40	45.51	Protein of unknown function (DUF1218)	[more]
AT3G15480.1	2.8e-39	45.56	Protein of unknown function (DUF1218)	[more]
AT1G52910.1	2.3e-38	44.77	Protein of unknown function (DUF1218)	[more]

BLAST of CmaCh04G020470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131649\|ref\|XP_008465787.1\|	7.0e-93	93.19	PREDICTED: uncharacterized protein LOC103503388 [Cucumis melo]	[more]
gi\|449445144\|ref\|XP_004140333.1\|	4.5e-92	92.15	PREDICTED: uncharacterized protein LOC101221296 [Cucumis sativus]	[more]
gi\|694311229\|ref\|XP_009356779.1\|	4.1e-85	85.26	PREDICTED: uncharacterized protein LOC103947586 [Pyrus x bretschneideri]	[more]
gi\|658008952\|ref\|XP_008339673.1\|	9.1e-85	84.74	PREDICTED: uncharacterized protein LOC103402700 [Malus domestica]	[more]
gi\|694331172\|ref\|XP_009356267.1\|	7.7e-84	84.21	PREDICTED: uncharacterized protein LOC103947134 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020470.1	CmaCh04G020470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 62..156 score: 4.3
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 4..190 score: 2.9E
None	No IPR available	PANTHER	PTHR31769:SF5	EXPRESSED PROTEIN	coord: 4..190 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G020470	Csa5G373210	Cucumber (Chinese Long) v2	cmacuB744
CmaCh04G020470	MELO3C003027	Melon (DHL92) v3.5.1	cmameB632
CmaCh04G020470	ClCG03G009550	Watermelon (Charleston Gray)	cmawcgB648
CmaCh04G020470	CSPI05G14030	Wild cucumber (PI 183967)	cmacpiB753
CmaCh04G020470	CmoCh15G010320	Cucurbita moschata (Rifu)	cmacmoB698
CmaCh04G020470	CmoCh04G021460	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G020470	Lsi09G010370	Bottle gourd (USVL1VR-Ls)	cmalsiB623
CmaCh04G020470	Cp4.1LG01g17860	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G020470	MELO3C003027.2	Melon (DHL92) v3.6.1	cmamedB717
CmaCh04G020470	CsaV3_5G023140	Cucumber (Chinese Long) v3	cmacucB0877
CmaCh04G020470	Cla97C03G060660	Watermelon (97103) v2	cmawmbB750
CmaCh04G020470	CsGy5G014060	Cucumber (Gy14) v2	cgybcmaB663
CmaCh04G020470	Carg27854	Silver-seed gourd	carcmaB0922

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G020470	Bottle gourd (USVL1VR-Ls)	cmalsiB675
CmaCh04G020470	Bottle gourd (USVL1VR-Ls)	cmalsiB683
CmaCh04G020470	Cucumber (Gy14) v2	cgybcmaB657
CmaCh04G020470	Cucumber (Gy14) v2	cgybcmaB690
CmaCh04G020470	Melon (DHL92) v3.6.1	cmamedB733
CmaCh04G020470	Melon (DHL92) v3.6.1	cmamedB747
CmaCh04G020470	Silver-seed gourd	carcmaB1444
CmaCh04G020470	Cucumber (Chinese Long) v3	cmacucB0902
CmaCh04G020470	Watermelon (97103) v2	cmawmbB760
CmaCh04G020470	Watermelon (97103) v2	cmawmbB768
CmaCh04G020470	Wax gourd	cmawgoB0900
CmaCh04G020470	Wax gourd	cmawgoB0908
CmaCh04G020470	Cucurbita maxima (Rimu)	cmacmaB403
CmaCh04G020470	Cucurbita maxima (Rimu)	cmacmaB535
CmaCh04G020470	Cucumber (Gy14) v1	cgycmaB0803
CmaCh04G020470	Cucurbita moschata (Rifu)	cmacmoB708
CmaCh04G020470	Cucurbita moschata (Rifu)	cmacmoB738
CmaCh04G020470	Wild cucumber (PI 183967)	cmacpiB775
CmaCh04G020470	Cucumber (Chinese Long) v2	cmacuB764
CmaCh04G020470	Melon (DHL92) v3.5.1	cmameB649
CmaCh04G020470	Watermelon (Charleston Gray)	cmawcgB657
CmaCh04G020470	Watermelon (97103) v1	cmawmB701