CmaCh04G014380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G014380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 7333695 .. 7337354 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATAGTTATTGGACTTGGTGGCGGAGGAGGATCCGGTGGAGGAGGTCGTGGTGGCAGTGGAGGAGGATCCTCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCCCAGGACGAGGTCGTGGTGGTGGTGGGGGAGGATCCGCAGGAGGAGGTAGTGGCGGCGGGGGAGGATCCACCGGAGGAGGTAGTGGTGGCGGGGGAGGATCGGAAGGAGGAGGTCGTGGTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGGTTCATAGTAGCTGGAGTTTCGTCATCAGTTGCATATTTATTTAGACATATTTGAATTTGATTATGAAGACATATATACTCAAAATCATGAATAATTTGTTTGATAAAAGAAGCAAAATGGAGGCAATGGGACGGTGTCTAATTTGTTTGATTGATGTATTATGTATGTAATTTTGTGTTCATATTAACTCATTCTTTGGTTTTGGCTGGTGTTTTGCGATTCTACCCCTTTGTTCGACTCTAATTTTATTAAATACATGTTTGAATTTAAGTTTGGTGAGTACACGTCGGGGGTAAACAAATTAAACTAGGTTGAATTGGAAAAATCTTTTCGTTAGTGATATGAGTAATTTGAATAAAGCTCACAACCTAACTCAACTTGGATCGAGGTGGGTTGAATCCGATCGGTTGAATTAGTGACCCGAACAATTTAAATAGAGTTCACAAATTAGATTGGGTTGAATTGGGTTGGGTTGTTAGATTATTTTTTTTTCCTTCTAATTATTGAAAAAAATCATATTTATGTACCATACACATTACATTTTGATAATTATAATAAACATTGATTAAAAATATTAAATATTTGTAATCTTCGTGATAAACTTAAAGTAGGGTAGGGTTGACTTCAACTTTGTTACTCTATTATTAGTCCAACAAAAATAATGTTACTTTTCGACATGAATTTGAGTTAAAAAATTCAACCCAGCCCAAATTGAAATAATAAATAACTAAATAAATTCACCCAACTCAACTTTTATAATTTTGGTTGAATAGTCCAAATTAATCGAGTTCTTGGATCATATCAAATGAAATCAACCACAATTGTGTATTACTAACGGTTAAAATATTATAAATAATAATTACAAAGCTACTAACTTCCTCACAAATTAACCAAAATAGTTTAAGTAATTAATTTTAATTAATTAAGAATAGTTGAGCATAACAAGTTTCACCCAAATTTCATATATTGAGAACAGCAAACAAAACAACATCTGGAAGTAGTTTAGAGACATCAACCAATAAGACATCAAAATCAGACAAGATCAAATCAAATCAGATCTAAGATCGCCAGCCAACTAGAAACCAAAACCAAAATCAAAATCAAAATCAAACTCGAGATCGAGATCGAGATCGCGATCCAGACACCAACTGAGAAAAGGTTTCAGAATCATGGAAGAAGAACAGAAACCAAAGTTATCCTATTCAGTTTTGATTGTTATCACTCACAATCAAACAACAGTTAAACCAGAAGAGTAGAAACCGTGTCCTGAAGGGGCCTTCTTTCAGCAATAGTTTCAAAAAAAGATTCGAGTTCGTGTTTCTTTTTAAAAGGATGTCTTATTCTAACCACTCTTGTTCCGTGTCCGTGTTCGTGTCCTTAAAAGAGATAAGATAGCTTTAGTGGATCAAAAGAAGACTTCCCTGCCATTTTGTATAGGTATATCACACCATTCCTAACAGCCATATACAGAAGGATCTAGATAACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAAGCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCGCCAACAACAAATCCTCCCAACAGGTAACTATCCTTTCCAATCTCTCAACTAAGATTCAATTCACACAATTCTTCACAATTCTTCACGATTCTTCTCTTTATGTTAATATCCTTTCCAATCTTTCGATCAAAATTCATTTTTTAGTGTATCGTTCTAAATACTATTCAATGAGTTCATCACAATATGGCTGTCGTAATAACCGTCAAGAAGTAATACTTATCAGACACATTGTGACAACCTAAACTAAAAGGATCATAAGTTTGCCTTTATTCTCTTTTCTTTAGAGGTGTAAAGGAAGCTATCAGAACAACTATGAGAGGAAAAGGTAAATGTAGAATACTAAGATAGTTAAAGGTTAACTCATTCCTAAAGTTAAACTTAGTTGAGTTTAAGTTAGGATAACTTAAAATTATATCCATGTTTTTAACACTAATCAACAACAAAGTGTAAAGTATATACGACAAAGTTGAATAATGAGACCGACAATAAAATAAAGTGTGCATTCCATAAAATGTGTGTATAAACGACAAATTTGCACAATTGCAGATGTGTTGAGAATAGTAATGTGGAAAAGGAAAGAATAAAAGGTAAATAGAAGAATATAGACGAGTGAGGAGTGCAAGTTATTATGTCTTTTATAATGTCAAATGAAAATAAATATATAAATAAAATAAAGTTTAAATGGAGGGCCATAACAATGTATGACTTTTCCACTAACTTCAACTTTTGGGAGTTAATATTTCAAATCAAATCAAAGGCTAGATGCTGCTAGTGACTAAAGTGATCAAATAATCAACTAGTCCAACTAGTAAGATATTCATAATTTCTAATTTATTATTTTAATTAAATGGTAATATTTAATAGAAACAAAGGGATCAAATGATTAAGGTTTCATTTATATTATGATATATATGATGCTTATATATATTTATATATGTGTTTGGTTGCAAAAATTTAAAGTTTTTTAAAGTTCAAGAACTTGTGAAATAAGCTCTTCCCCATTCCTACTTTTAATTAGGGATTATATCGAGAGCTATAGAGTCTATTTAAAAAAAAAAATGTCCCAAAATTCATTTCACTAATGATGATTTTTACCTTCAAAATGTTTATTTTATGTGAAATATCAGATAATTAAGCTTAAAATTACCACTAAATTCATTTCACGAAAGTCGCCTTTTTAAATATTTAAAATAGTTTAAAATTAAAATGGGATTTAAATCAAATCCAAGATTAGAAACTTAAAAGAGGGAATTTTTGGTGCCTCACAAGTGCATGCCATGAATAGAATATTCCTACACACTTCCCACGAAGAAATAAAGGGTCACCAAAAGAAACTTACCACTAAATTCCTACCGTCAGTGTATTCTGTTGGGTGCGCTTCTTTTTCCAGTGACATTTTTTAAGCTTTAAAAATGAAATTCATTATACCCCCATTCCTAAGCCAGTTTCTATATGTATGCAGAGCCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCCAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGACCGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAGTTTTCTGA

mRNA sequence

ATGCACATAGTTATTGGACTTGGTGGCGGAGGAGGATCCGGTGGAGGAGGTCGTGGTGGCAGTGGAGGAGGATCCTCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCCCAGGACGAGGTCGTGGTGGTGGTGGGGGAGGATCCGCAGGAGGAGGTAGTGGCGGCGGGGGAGGATCCACCGGAGGAGGTAGTGGTGGCGGGGGAGGATCGGAAGGAGGAGGTCGTGGTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGCCATATACAGAAGGATCTAGATAACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAAGCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCGCCAACAACAAATCCTCCCAACAGTTTCTATATGTATGCAGAGCCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCCAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGACCGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAGTTTTCTGA

Coding sequence (CDS)

ATGCACATAGTTATTGGACTTGGTGGCGGAGGAGGATCCGGTGGAGGAGGTCGTGGTGGCAGTGGAGGAGGATCCTCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCCCAGGACGAGGTCGTGGTGGTGGTGGGGGAGGATCCGCAGGAGGAGGTAGTGGCGGCGGGGGAGGATCCACCGGAGGAGGTAGTGGTGGCGGGGGAGGATCGGAAGGAGGAGGTCGTGGTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGCCATATACAGAAGGATCTAGATAACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAAGCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCGCCAACAACAAATCCTCCCAACAGTTTCTATATGTATGCAGAGCCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCCAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGACCGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAGTTTTCTGA

Protein sequence

MHIVIGLGGGGGSGGGGRGGSGGGSSGGGRGGGGGSPGRGRGGGGGGSAGGGSGGGGGSTGGGSGGGGGSEGGGRGGRGGAHSGTGNWHQNSMSHIQKDLDNTKPTCFYYYGKKKGAKLDVLAVLFYHTSHFICSPTTNPPNSFYMYAEPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF
Homology
[Close]
BLAST of CmaCh04G014380 vs. NCBI nr
Match: gi|659091823|ref|XP_008446752.1| (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 80/114 (70.18%), Postives = 85/114 (74.56%), Query Frame = 1 

Query: 149 EPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGI----GHGSAAGGGENGGGGRPQA 208
           E NY QKT   K G+ GVTN+IS  YSA AITVS  I    G  +AAGGGENGGG RP  
Sbjct: 34  ESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHT 93

Query: 209 GGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF 259
           GG G AVIPVYAAGSAQA HRQGRP NAGN YENN GLLVA+VLAAIAHL  V+
Sbjct: 94  GG-GTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY 146

[Close]
BLAST of CmaCh04G014380 vs. NCBI nr
Match: gi|778706307|ref|XP_011655831.1| (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 88/159 (55.35%), Postives = 102/159 (64.15%), Query Frame = 1 

Query: 112 GKKKGAKLDVLAVLFYHTSHFICSPTTNPPNSFYMYAEPNYHQKTNAEKHGQDGVTNRIS 171
           G+++G +L  + +LF  T     S        F    E NY QKT  +KHG+ GVTN+I+
Sbjct: 2   GRRRGIRL--IFLLFCST--LAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQIN 61

Query: 172 SIYSARAITVSQ------------GIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGS 231
             YS+ AITVS             G G  +AAGGGENGG  RP+ GG G AVIPVYAAGS
Sbjct: 62  RRYSSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGS-RPRTGG-GTAVIPVYAAGS 121

Query: 232 AQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF 259
           AQAHHRQGR  NAGN YENNMGLLVA+VLAAIAHL  VF
Sbjct: 122 AQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

The following BLAST results are available for this feature:
BLAST of CmaCh04G014380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014380 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091823|ref|XP_008446752.1|1.2e-2670.18PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo][more]
gi|778706307|ref|XP_011655831.1|1.5e-2655.35PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G014380.1CmaCh04G014380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G014380Cucsa.282660Cucumber (Gy14) v1cgycmaB0801
CmaCh04G014380Cla020485Watermelon (97103) v1cmawmB699
CmaCh04G014380Csa5G613600Cucumber (Chinese Long) v2cmacuB748
CmaCh04G014380MELO3C012345Melon (DHL92) v3.5.1cmameB640
CmaCh04G014380ClCG05G021850Watermelon (Charleston Gray)cmawcgB655
CmaCh04G014380CSPI05G26260Wild cucumber (PI 183967)cmacpiB755
CmaCh04G014380CmoCh18G009520Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G014380CmoCh04G015090Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G014380Lsi04G001540Bottle gourd (USVL1VR-Ls)cmalsiB669
CmaCh04G014380Cp4.1LG09g03730Cucurbita pepo (Zucchini)cmacpeB700
CmaCh04G014380Cp4.1LG01g14260Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G014380MELO3C012345.2Melon (DHL92) v3.6.1cmamedB726
CmaCh04G014380CsaV3_5G035310Cucumber (Chinese Long) v3cmacucB0885
CmaCh04G014380Cla97C05G103540Watermelon (97103) v2cmawmbB758
CmaCh04G014380Bhi07G000630Wax gourdcmawgoB0903
CmaCh04G014380Carg01899Silver-seed gourdcarcmaB1170
CmaCh04G014380Carg18995Silver-seed gourdcarcmaB1457
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G014380CmaCh18G009510Cucurbita maxima (Rimu)cmacmaB402
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G014380Cucurbita maxima (Rimu)cmacmaB536
CmaCh04G014380Cucurbita moschata (Rifu)cmacmoB740
CmaCh04G014380Watermelon (Charleston Gray)cmawcgB679
CmaCh04G014380Watermelon (97103) v1cmawmB667
CmaCh04G014380Cucurbita pepo (Zucchini)cmacpeB734
CmaCh04G014380Bottle gourd (USVL1VR-Ls)cmalsiB706
CmaCh04G014380Cucumber (Gy14) v2cgybcmaB672