Csa5G613600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G613600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 24180276 .. 24183307 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAAGAAGAGGTATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACGGCAACAGGTCAGTATCCTTTCTAATCTCTTGAGAAAATTCAATTCACCTTGTTTTATTCTCTATTGTTTTATCACAAATTTTCTCTGCATATTCATTTTTTTGGATCACACAATTTCAAAATTGAATCAGACTGATCATGAAATCATTTCTTGGTATCTAGTTCTTAATGAAAACCTAGTCTCCAAGAAAAAAGTAATAATTCCTTCAAAGAAAATCAGTGCATCATAATAATCCAACATAAATGTTAGATGTGAGTTCATTAATTTGAACATGATATAAATTTGAGGTACTTCTCTGTATTCAATAGTAAAGAATGTCAGTGCAGTTTCATTAAACGATGAGTTTCGTCAAACAATTTTATCTTAAAAAGCTCAAAAGTTCTATCCTTTATGTTAAAGGGGTGTTTGGAGCTTTAAATTTAATTATGAAGTTTAAAGTTCTATCCTTTATGTTTAGGCTATATAGTTGAAAGATAGATTTTCTTGTTAAATGCTTAAAATAGATTATAATAGATTACAAGTCTAGAGTTAATACAGTAGAGTTAAAAACTACAACTTAGAGTACATAGTTGAAAGGTATAGTCTGTTGTTAAATGCAGAAAATAGAGAAATAAGAACAGATAATGGTTCTAGATAAATGGACCATTTCATATAATTTACCATAGAAGTTGAATAGTTTAATATCAATTTATAAAAAGAAGTTTGTAGGTTAAATACCTTGGATGCTTTTAAGCTCTTTGTTCTCTTCTCTTAAAAGCCGTGAAAGTAAACTACGAAATCGTCCATGTCAAAAGCTTAAACTTGAGGATAGAAAAATTGAATCATCATAATACTAAAATTCCCCGTGACAAATAATTTTGATATCATATAAGTGACCCATTAGCTCAAAAGTTTAGGTAGGTAAATCCATTAAGCCAACCAAGCAACAAAGAGAATCGGTAAAAAAAGTATATACGACAAAATTGAATTATGAAACCGACAAGAAGCTAAAATAAAGAGTGCATTCCAGATAACATGTGTAGATGTATAACGACAAAATTGCATGATTGGAAGTCAGAATAAAATAGTAATGTGAAAAAAAAAGGAATAAAAGATTAATAGAAGAGTAAAGGTTAGTGAGGATTGCAGGTTAACATGTCCTTTGGGATTTCTAATGTAAATAGAATAAAGTTCAATATCCAGTGAATGGAGGGGCCATAGGCCCATAACAATGTAAGGGTTTTCCAATAACTTTAGCTTTTGGGAGATAATATTTTAAATCAAATCCGAGTTTAGATGCTGCTAATCAGTACTGACAGAAGTGATCAAATAATCAACTACTCTAATTAGTCAAGATAATATTCATAATCTCCAATTTAGTTTTCTTTTATTTGAATGGTAATACTTAATAAAAACAAAGTGATCAAATGATTGAGTTTTCATTTATTTTATGATGCATGATGCTTACAAGTTACATATATGGTTGCAAAAAGATGTGTTTTTTTTTGGAACTTGTTCAATAAGCTTGTCCTATTCCTATTCCCATTTTCAATAAGCTCTTCTTATTCTTACTCCTAATTCGCTGTATTTAATTAGTGAATATATACATTAATATTAAAATTGTAGTTTGAAACTACTTGGTTAGAGAGGTAATGGAAAACGAGTTTCCAAAACAGAAAAATATAGGGTCTACTTGTTTAAAAACATTGAACAAAGTTGAATAGGATGAATTTTACGTCATAAAACAGCTTATTTTCGTGAAATATCAGAAAACTGAACTTAACTTTTTAAAAGAATAGTTATAATGATAACCAATTGTACAGCAACATTCTGAAACAATTGAAAATGTGGCCAAGTTTAAGTGAGTCTATCAGTGCTAACCAATATTTGCAATATGGTTTTGAATGATAGACTTTGTTATTTATGCTAATACTTCACGCATATATTTGCAAATATTTCCTTCTAAAAACACGTTATTTAAGTATGAAGTTTCAAATATAATGGAGTTGAAATATAATAACCCAAATATAATGAAGTGGAAATATACGTGCGCATGCGAATATACAGAAAAAATTTGTGATCTTCTTAACCACCGTTATTTTTGTAAAAATATAATTTAACAAAAAAAAAATTACACATATATATGATTCCTGGCCGTGTGTATTTATAGTGTGCGTTTCTTTAAATATGTTCTATTCTATATGTATGCAGAGTCTAATTACCAACAGAAAACTTACACAAAAAAACATGGTAAATATGGGGTTACTAACCAGATTAACAGAAGATACAGTTCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTGGAAGTGGAAGTGGAGGTGGAGGTGGAAGTGGAAGTGCAGCCGCTGCCGGCGGTGGGGAAAATGGTGGCAGTAGACCTCGTACAGGAGGAGGTACAGCCGTGATCCCTGTTTATGCAGCTGGTTCAGCACAAGCACATCACCGCCAAGGTCGAGCACATAATGCAGGAAATAGCTATGAGAACAATATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTGTAGAGTTTTCTGATATCAAGGCTGTCTCCACTGGGACACAATAACATTGTTATATTGTTGGGCCTCCGTTTCCTGTTAAGGTCAAGAAAAAAGTAAAATATTTGGCTTGCAAATGATTGTATGTGCAGAGAGAGAACCTCATAAAGTTTTTTTTTTCTTGTTTTGAGTGACCGTTGTATTGTACAGACGGAAGTATTTTAATTGCGTTAATTAGATACTCGTCTCAGGCATTATAATCACATAACTGAAACTATTGAATGTAAGAAACCAGTGAGAGATTCACCTCGTTAATATTCCAGTTCTTCAACCTTCATGGTGAGAGCAATTGCAGGGTTGTGGACATTTTGGTTTATCCTATTTGAATTGATTGATAAAGACAAAAGTTCAGACTTCAGAA

mRNA sequence

ATGGGAAGAAGAAGAGGTATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACGGCAACAGAGTCTAATTACCAACAGAAAACTTACACAAAAAAACATGGTAAATATGGGGTTACTAACCAGATTAACAGAAGATACAGTTCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTGGAAGTGGAAGTGGAGGTGGAGGTGGAAGTGGAAGTGCAGCCGCTGCCGGCGGTGGGGAAAATGGTGGCAGTAGACCTCGTACAGGAGGAGGTACAGCCGTGATCCCTGTTTATGCAGCTGGTTCAGCACAAGCACATCACCGCCAAGGTCGAGCACATAATGCAGGAAATAGCTATGAGAACAATATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTGTAGAGTTTTCTGA

Coding sequence (CDS)

ATGGGAAGAAGAAGAGGTATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACGGCAACAGAGTCTAATTACCAACAGAAAACTTACACAAAAAAACATGGTAAATATGGGGTTACTAACCAGATTAACAGAAGATACAGTTCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTGGAAGTGGAAGTGGAGGTGGAGGTGGAAGTGGAAGTGCAGCCGCTGCCGGCGGTGGGGAAAATGGTGGCAGTAGACCTCGTACAGGAGGAGGTACAGCCGTGATCCCTGTTTATGCAGCTGGTTCAGCACAAGCACATCACCGCCAAGGTCGAGCACATAATGCAGGAAATAGCTATGAGAACAATATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTGTAGAGTTTTCTGA

Protein sequence

MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF*
Homology
[Close]
BLAST of Csa5G613600 vs. TrEMBL
Match: A0A0A0KUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.0e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

Query: 1   MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY 60
           MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY 60

Query: 61  SSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHH 120
           SSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHH
Sbjct: 61  SSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHH 120

Query: 121 RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 155
           RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
Sbjct: 121 RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]
BLAST of Csa5G613600 vs. NCBI nr
Match: gi|778706307|ref|XP_011655831.1| (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 1.4e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

Query: 1   MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY 60
           MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY 60

Query: 61  SSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHH 120
           SSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHH
Sbjct: 61  SSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHH 120

Query: 121 RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 155
           RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
Sbjct: 121 RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]
BLAST of Csa5G613600 vs. NCBI nr
Match: gi|659091823|ref|XP_008446752.1| (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 1.0e-62
Identity = 130/152 (85.53%), Postives = 135/152 (88.82%), Query Frame = 1 

Query: 4   RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSS 63
           RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYT+K GKYGVTNQI+RRYS+S
Sbjct: 3   RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSAS 62

Query: 64  AITVSNVIRRGSGSGGGGGSGSAAAAGGGEN-GGSRPRTGGGTAVIPVYAAGSAQAHHRQ 123
           AITVSNVIRR         +G AAAAGGGEN GGSRP TGGGTAVIPVYAAGSAQA HRQ
Sbjct: 63  AITVSNVIRR--------ANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQ 122

Query: 124 GRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 155
           GR HNAGN YENN GLLVAAVLAAIAHLCRV+
Sbjct: 123 GRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY 146

The following BLAST results are available for this feature:
BLAST of Csa5G613600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUR6_CUCSA1.0e-80100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1[more]
BLAST of Csa5G613600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778706307|ref|XP_011655831.1|1.4e-80100.00PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus][more]
gi|659091823|ref|XP_008446752.1|1.0e-6285.53PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085044cucumber EST collection version 3.0transcribed_cluster
CU085973cucumber EST collection version 3.0transcribed_cluster
CU086640cucumber EST collection version 3.0transcribed_cluster
CU115713cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G613600.1Csa5G613600.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU115713CU115713transcribed_cluster
CU085044CU085044transcribed_cluster
CU085973CU085973transcribed_cluster
CU086640CU086640transcribed_cluster