Cp4.1LG01g14260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g14260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 7746052 .. 7749135 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTACCAAATCAAATCAGATCTAAGATCGCCAGCCAACTAGAAACCAAAACCAAAATCAAAATCAAAATCAAAATCAAACTCGAGATCGAGATCGAGATCGAAACACCGAGAAAAGGTTTCAGAATCATGGAAGAAGAACAGAAACCAAAGTGATCCTATTCAGTTTTGATTGTTATCACTCACAATCAAACAACAGGAAACCAGAAGAGTAGAAACCGTGTCCTGAAGGGGCCTTCTTTCAGCAATAGTTTCAAAAAAAGATTCGAGTTCGTGTCTCTTTTTAAAAGGATGTCTTATTCTAACCACTCTTGTTCCGTGTCCGTGTTCGTGTCCTTAAAAGAGATAAGATAGCTTTAGTGGATCAAAAGAAGACTCCCCTGCCATTTTTGTATAAGTATATCACACCATTCCTAACAGCCACATACAGAAGGATCTAGATCACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAACAACAAATCCTCCCAACAGGTAACTATCCTTTCCAATCTCTCAACTAAGATTCAATTCACACAATTCTTCACAATTCTTCTCTTTATGTTCATATCCTTTCGATCAAAATTCATTTTTTAGTGTATCGTTCTAAATACTATTCAATGAGTTCATCACAATATGGCTGTCGTAATAACCGTCAAGATATAATACCTATCTGACACATTGTGACAACCTAAACTAAAAAGATCATAAGTTTGTCTTTATTCTCTTTTCTTTAGAGGTGTAAAGGAAGCTATCTGAACGACTACGAGAGGAAAAGGTAAATCTAAAATACTAAGATAGTTAAAGGTTAAATCGTTCCTAAGGTTAAGCTTAGTTTAGGTTAAAGTTGGGTAAATGTAAATAGTAAGATAGTTAAAAGGTTATATCATTCCTAAGGTTAAAGCTTAGTTGAGTTTAAGTTAGGATAACTTAAATTATATCCATGTTTTTAACACTAATCAACATCAAAGTGTAAAGTATATACGACAAAGTTGAATAATGAGACCGACAATAAAATAAAGTGTGCATTCCATAAAATGTGTGTATAAACGACAAATTTGCACAATTGCAGATGTGTTGAGAATAGTAATGTGGAAAAGGAAAGAATAAAAGGTAAATAGAAGAATATAGACGAGTGAGGAGTGCAAGTTATCATGTCTTTTATAATGTCAAATGAAAATAAATATATAAATAAAATAAAGTTTAAATGGAGGGCCATAACAATGTATGACTTTTCCACTAACTTTAACTTTTGGGAGTTAATATTTCAAATCAAATCAAAGGCTAGATGCTGCTAGTGACTAAAGTGATCAAATAATCAACTAATCCAACTAGTAAGATATTCATAATTTCTAATTTATTATTTTAATTAAATGGTAATATTAAATAGAAACAAAGGGATCAAATGATTAAGGTTTCATTTATATTATGATATATATGATGCTTATATATATATATGTTTGGTTGCAAAAATTTTAAGTTTTTTTAAAGTTCAAAACTTGTGAAATAAGCCCTTCCCATTCCTACTTTTTATTGTATTTAATTAGAGATTATATCCACTTGTATTAAAAACCTCCAACTGGGTTAGAGAAGGATTAGAAAGGAGTTGGAAAAGAGAGTTAAAAAGAGTCTATTTTTTAAAAAAATATGTTCAAAATTCATTTCACTAATGATGATTTTTACCTTCAAAATGTTTATTTTATGTGAAATATCAGATAATTAAGCTTAAAATTACCACTAAATTCATTTCACGTAGTTTAAATTAAAATGGGATTTAAATCAAATACAAGATTAGAAACTTATAAAGTGGGAATTTTTGGTGCCTCACTAGTGCATGCCATGAATAGAATATTCCTACACACTTCCCACGAAGAAATAATGGGTCACCAAAAGAAAACTTACCACTAAATTCCTACGGTCAGTGTGTATTCTGTTGTGTGCGCTTCTTTTTTCAGTAACATTTGCTAAGCTTTAAGAAATGAAATTCATTATACCCCCATTCCTAAACCATTTTCTATATGTATGCAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCACAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGTGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAGTTTTCTGATATCAAGGATGCTTCCATACAAGAACATTGTTAAATCTGTTGATTGAGGTGTGTGCTTCATCTTTCTTGTTGGATCTTTCTTTCCTGTTAAGGTCAAGAAAAGTGCATAATAATTGGCTTGCAAATGATTGTATATACAGAAACAGAACCTCATAAACTCTTTCTTTGTTTGATAACTGTTGTATTGTACAGAGACAGTAGCCTTTTAATTGCGTCAATTACATGATTTCTGACTGGAAATGCAACAAAATTCTACATTTGCTAGATATTCAAAGTGGATAATAGCCAAAAGAGATTCTGTCATGATCATTTTGGTTTATCCTACTTCAATGGATTGATTGATGAAGACAAAAGCTTTAGAAACAAAGAATTCGAAAGGGAATTTTGATATGATGCATTAAATTAGTATCTTAATTCGTGGACTTGACAGGAGAAAAACTATAGAGCTTCAAGCCATAGTCACCCTTTGATGTACATATATTAACAAGAACAGAGAGGCTGGGGGCAGTATTATGTATCCTAGCATATAAGCTCATACTTTTGGTGATTTAATATGTGTAACAATGAATTCCTAACATGTTTATTTCCTCTCTATTTTGTGTAATATTTGAACCAATGTACGAGGGAATGAGTGTTAAGAATGTATTTAA

mRNA sequence

ATGGTAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAACAACAAATCCTCCCAACAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCACAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGTGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAATATTCAAAGTGGATAATAGCCAAAAGAGATTCTGTCATGATCATTTTGGTTTATCCTACTTCAATGGATTGATTGATGAAGACAAAAGCTTTAGAAACAAAGAATTCGAAAGGGAATTTTGATATGATGCATTAAATTAGTATCTTAATTCGTGGACTTGACAGGAGAAAAACTATAGAGCTTCAAGCCATAGTCACCCTTTGATGTACATATATTAACAAGAACAGAGAGGCTGGGGGCAGTATTATGTATCCTAGCATATAAGCTCATACTTTTGGTGATTTAATATGTGTAACAATGAATTCCTAACATGTTTATTTCCTCTCTATTTTGTGTAATATTTGAACCAATGTACGAGGGAATGAGTGTTAAGAATGTATTTAA

Coding sequence (CDS)

ATGGTAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAACAACAAATCCTCCCAACAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCACAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGTGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAATATTCAAAGTGGATAATAGCCAAAAGAGATTCTGTCATGATCATTTTGGTTTATCCTACTTCAATGGATTGATTGATGAAGACAAAAGCTTTAGAAACAAAGAATTCGAAAGGGAATTTTGA

Protein sequence

MVRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLIFKVDNSQKRFCHDHFGLSYFNGLIDEDKSFRNKEFEREF
Homology
[Close]
BLAST of Cp4.1LG01g14260 vs. TrEMBL
Match: A0A0A0KUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-36
Identity = 99/152 (65.13%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 3   RELTLMFLLFCSTIPAISSALQQQILPT--ESNYHQKTNAEKHGKDGVTNRISSIYSARA 62
           R + L+FLLFCST+   S+ALQQQI PT  ESNY QKT  +KHGK GVTN+I+  YS+ A
Sbjct: 5   RGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSA 64

Query: 63  ITVSQ------------GIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQ 122
           ITVS             G G  +AAGGGENGG  RP+ GG G AVIPVYAAGSAQAHHRQ
Sbjct: 65  ITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGS-RPRTGG-GTAVIPVYAAGSAQAHHRQ 124

Query: 123 GRTRNAGNHYENNMGLLVASVLAAIAHLHLIF 141
           GR  NAGN YENNMGLLVA+VLAAIAHL  +F
Sbjct: 125 GRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]
BLAST of Cp4.1LG01g14260 vs. NCBI nr
Match: gi|778706307|ref|XP_011655831.1| (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 99/152 (65.13%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 3   RELTLMFLLFCSTIPAISSALQQQILPT--ESNYHQKTNAEKHGKDGVTNRISSIYSARA 62
           R + L+FLLFCST+   S+ALQQQI PT  ESNY QKT  +KHGK GVTN+I+  YS+ A
Sbjct: 5   RGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSA 64

Query: 63  ITVSQ------------GIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQ 122
           ITVS             G G  +AAGGGENGG  RP+ GG G AVIPVYAAGSAQAHHRQ
Sbjct: 65  ITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGS-RPRTGG-GTAVIPVYAAGSAQAHHRQ 124

Query: 123 GRTRNAGNHYENNMGLLVASVLAAIAHLHLIF 141
           GR  NAGN YENNMGLLVA+VLAAIAHL  +F
Sbjct: 125 GRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]
BLAST of Cp4.1LG01g14260 vs. NCBI nr
Match: gi|659091823|ref|XP_008446752.1| (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 2.8e-35
Identity = 98/144 (68.06%), Postives = 107/144 (74.31%), Query Frame = 1 

Query: 3   RELTLMFLLFCSTIPAISSALQQQILPT--ESNYHQKTNAEKHGKDGVTNRISSIYSARA 62
           R + L+FLLFCST+   S+ALQQQI PT  ESNY QKT   K GK GVTN+IS  YSA A
Sbjct: 4   RGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSASA 63

Query: 63  ITVSQGI----GHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGN 122
           ITVS  I    G  +AAGGGENGGG RP  GG G AVIPVYAAGSAQA HRQGR  NAGN
Sbjct: 64  ITVSNVIRRANGGAAAAGGGENGGGSRPHTGG-GTAVIPVYAAGSAQARHRQGRPHNAGN 123

Query: 123 HYENNMGLLVASVLAAIAHLHLIF 141
            YENN GLLVA+VLAAIAHL  ++
Sbjct: 124 GYENNTGLLVAAVLAAIAHLCRVY 146

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g14260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g14260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUR6_CUCSA8.7e-3665.13Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1[more]
BLAST of Cp4.1LG01g14260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g14260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778706307|ref|XP_011655831.1|1.2e-3565.13PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus][more]
gi|659091823|ref|XP_008446752.1|2.8e-3568.06PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g14260.1Cp4.1LG01g14260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g14260Cucsa.282660Cucumber (Gy14) v1cgycpeB0750
Cp4.1LG01g14260CmaCh18G009510Cucurbita maxima (Rimu)cmacpeB429
Cp4.1LG01g14260CmaCh04G014380Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g14260CmoCh04G015090Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g14260CmoCh18G009520Cucurbita moschata (Rifu)cmocpeB392
Cp4.1LG01g14260Cla020485Watermelon (97103) v1cpewmB427
Cp4.1LG01g14260Csa5G613600Cucumber (Chinese Long) v2cpecuB439
Cp4.1LG01g14260MELO3C012345Melon (DHL92) v3.5.1cpemeB363
Cp4.1LG01g14260ClCG05G021850Watermelon (Charleston Gray)cpewcgB388
Cp4.1LG01g14260CSPI05G26260Wild cucumber (PI 183967)cpecpiB439
Cp4.1LG01g14260Lsi04G001540Bottle gourd (USVL1VR-Ls)cpelsiB352
Cp4.1LG01g14260MELO3C012345.2Melon (DHL92) v3.6.1cpemedB423
Cp4.1LG01g14260CsaV3_5G035310Cucumber (Chinese Long) v3cpecucB0543
Cp4.1LG01g14260Bhi07G000630Wax gourdcpewgoB0569
Cp4.1LG01g14260Carg01899Silver-seed gourdcarcpeB1177
Cp4.1LG01g14260Carg18995Silver-seed gourdcarcpeB1466
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g14260Cp4.1LG09g03730Cucurbita pepo (Zucchini)cpecpeB040
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g14260Cucurbita pepo (Zucchini)cpecpeB379
Cp4.1LG01g14260Cucurbita maxima (Rimu)cmacpeB733
Cp4.1LG01g14260Cucurbita moschata (Rifu)cmocpeB689
Cp4.1LG01g14260Bottle gourd (USVL1VR-Ls)cpelsiB384
Cp4.1LG01g14260Watermelon (Charleston Gray)cpewcgB416
Cp4.1LG01g14260Watermelon (97103) v1cpewmB394
Cp4.1LG01g14260Cucumber (Gy14) v2cgybcpeB648