MELO3C012345 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012345
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative sodium-coupled neutral amino acid transporter 10
Location	chr10 : 1119438 .. 1122177 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCTTAAAGAGATAAGAGTGCTTTAGTGGATTGGAAGAAGAAAAAACCTAAGAACTTCCACTTCCCCCCGTTTTATATAAATAAATCAGAGTAGAAGACCGTTTTCGCATTACCTAATAGAGAGAAGATAGCTATTCCTATTACAACAATGGAAAGAAGAGGGATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCGGCTCTCCAACAGCAAATCTTCCCAACAGCAACAGGTCAGTATCCTTTCCAATCTCTTGAGGAAATTCAATTCACCTTGTTTTATCACAAATTTTCTCTGTATATTCATTTTTTTGGACCACACAATTTCAAAATTGAATCAGACTGAACATGAAATCATTTCTTGGTATCTAGTTCTTAATGAAAGTCTAGTCTCCACTTACGAAAAAATTAATAATTCCTTCAAAGAAAATCAGTGCATCATAATAATCTAACATAAATGTTAGATGTAAGTTCAATAATTAAAACCTGATAAAAATTTGAGGTACCTCTCTATATATTCAATAGAAAAAGAATGTCAGTGCAGTTTCATTAAACGATGAGTTTCGTTAAACAATTTTTTCTTAAAAAGCTCAAAAGTTCTATCATTTGTGTTAAAAGGGATGGTTGGGGCCTTACTTTAATTATGAAGTTGAGAGTTAATATGTTAGAGTTAAAAACTAGTACTTATAGAAGATAGTTGAAGGGTAGAGTTTCTTGTTAAATGCAGAAAATAGAGAAATAAGAAAAGATAAAGGTTCTAGATAAATGGACAATTTCATATTATTTACTATAGAAGTTGAATAGTTCAATATCAATTTACTGTACAAGTCTTTATTCTCTTCTCTTAAAAGTCGTGAAAGAAAATTAATCGTTAAGGTAAAAAGTAAACAACGAAATCGTCCATGTCAAAAGCTTTAACTTGTGGATTACTACAAAAAAAAAAAAGAAATCATCATAATACTAAAATTCCCCATGACTACTAATATTGATATCATGATAAGAGACCCATTAGCTCAGAAGTTTAGGTAGGTAAATCCATTAAGCCAACCAAGCAACAAAGAGAATCGGTAATAAAGTATATACGACAAAGTTGAATTATGAAACCGACAAGAAGCTAAAATAAAGTGTGCATTCCAGATAACATGTGTGGATGTATAAACGACAAAATTGCATGATTGAAAATCAGAATAAAATAGTAATGTGAAAAAGAAAAGAATAAAAGATTAATAGAAGAGTATAGGTTAGTGAGGAGTGCAGGTAAACATGTCCTTCGGAATTTCGAATGAAAATAAATATGTAAATAAAATAAAGTTTAATATCCAGTGAATGGAGGGGCCATAGGCCCATAACAATTTAAGACTTTTCCAATAACTTTAGCTTTTGGGAGATAATATTTTAAATCAAATCAGAGTCTAGATGGTGCTAATCAGTACTGACAGAAGTGATCAAATAATCAACTATTCTAATTAGTCAAGATAATATTCATAATCTCCAATTTAGCTTTTTTTCTTTTATTTGTATGGTTATACTTTAATAAAAACAAAGTGATCAAATGATTAAGTTTTCGTTTATTTTATGATGCATGATGCTTACCAGTTACATATATATTTGGTTGCAAAAAAAAAAATGCGTTTTTTTGGAACTTGTTCAATAAGCTTGTCCTATTCGTATTCCCATTTCTATTCCCGTTTTTCAATAAGCTCTTCTTGTTCCTACTTTTTATTCGCTGTTTTTAATTAGAGAATATATACACTAATACTAAACAATGTAATTTGAAACCACTTGGTTAGAGAGGTACAAGAAAAGGAGTTTCCAAAACAGAAAAATATAGGGTCTACTTTTTTAAAACATTGAACAAAATTTATTTCAATAGGATGAATTTTACCTCATAAAACAGGTTATTTTCGTAAAATATCATAAAATTGAACTTTAACTTTTTAAAAGAATAGTTATAATGGATACCAATTTTAGGAATATAATCCATTGTACAGCAATATTTCAAAAAAAATTGAAAATATAGCAAAGTTTGAGTCCATTGCTGACATGTTCTATTCTATATTATGCAGAGTCTAATTACCAACAGAAAACTTACACAAGAAAACAGGGCAAATATGGGGTTACTAACCAGATTAGCAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTGCAAATGGAGGTGCAGCCGCTGCCGGCGGTGGAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTACAGCCGTGATCCCTGTTTATGCAGCTGGTTCAGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCAGGAAATGGCTATGAGAACAATACGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTGTAGAGTTTACTGATATCAAGGCTGTCTCCATTGGGACACAATAACATTGTTACATTGTTGAGCTTTCGTTTCCTGTCAAGGTCAAGAAAAAAGCAAAATATTTGGATTGTAAATGATTGTATGTGCAGAGAGAGAACCTCATAAAGTCTTTTTTTTTTTTTTTCTTGTTCTGGGTGACCGTTGTATTGTACATAGACAGAAGTATTTTAATTGCGTCAATTAGATAATCTTCTGACAGGCATTACAATCACATAACTGAAATTATTTTATGTAAGAAACTAGTGAGAATTTCACCTCGGTTAATATTCCAGTTCTCTACAACCTTGATGG

mRNA sequence

GTGCTTAAAGAGATAAGAGTGCTTTAGTGGATTGGAAGAAGAAAAAACCTAAGAACTTCCACTTCCCCCCGTTTTATATAAATAAATCAGAGTAGAAGACCGTTTTCGCATTACCTAATAGAGAGAAGATAGCTATTCCTATTACAACAATGGAAAGAAGAGGGATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCGGCTCTCCAACAGCAAATCTTCCCAACAGCAACAGAGTCTAATTACCAACAGAAAACTTACACAAGAAAACAGGGCAAATATGGGGTTACTAACCAGATTAGCAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTGCAAATGGAGGTGCAGCCGCTGCCGGCGGTGGAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTACAGCCGTGATCCCTGTTTATGCAGCTGGTTCAGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCAGGAAATGGCTATGAGAACAATACGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTGTAGAGTTTACTGATATCAAGGCTGTCTCCATTGGGACACAATAACATTGTTACATTGTTGAGCTTTCGTTTCCTGTCAAGGTCAAGAAAAAAGCAAAATATTTGGATTGTAAATGATTGTATGTGCAGAGAGAGAACCTCATAAAGTCTTTTTTTTTTTTTTTCTTGTTCTGGGTGACCGTTGTATTGTACATAGACAGAAGTATTTTAATTGCGTCAATTAGATAATCTTCTGACAGGCATTACAATCACATAACTGAAATTATTTTATGTAAGAAACTAGTGAGAATTTCACCTCGGTTAATATTCCAGTTCTCTACAACCTTGATGG

Coding sequence (CDS)

ATGGAAAGAAGAGGGATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCGGCTCTCCAACAGCAAATCTTCCCAACAGCAACAGAGTCTAATTACCAACAGAAAACTTACACAAGAAAACAGGGCAAATATGGGGTTACTAACCAGATTAGCAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTGCAAATGGAGGTGCAGCCGCTGCCGGCGGTGGAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTACAGCCGTGATCCCTGTTTATGCAGCTGGTTCAGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCAGGAAATGGCTATGAGAACAATACGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTGTAGAGTTTACTGA

Protein sequence

MERRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY*

Homology

[Close]

BLAST of MELO3C012345 vs. TrEMBL
Match: A0A0A0KUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.9e-63
Identity = 130/152 (85.53%), Postives = 135/152 (88.82%), Query Frame = 1


Query: 3   RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSAS 62
           RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYT+K GKYGVTNQI+RRYS+S
Sbjct: 4   RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSS 63

Query: 63  AITVSNVIRR--------ANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQ 122
           AITVSNVIRR         +G AAAAGGGEN GGSRP TGGGTAVIPVYAAGSAQA HRQ
Sbjct: 64  AITVSNVIRRGSGSGGGGGSGSAAAAGGGEN-GGSRPRTGGGTAVIPVYAAGSAQAHHRQ 123

Query: 123 GRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY 147
           GR HNAGN YENN GLLVAAVLAAIAHLCRV+
Sbjct: 124 GRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]

BLAST of MELO3C012345 vs. NCBI nr
Match: gi|659091823|ref|XP_008446752.1| (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 7.8e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MERRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYS 60
           MERRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYS
Sbjct: 1   MERRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYS 60

Query: 61  ASAITVSNVIRRANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNA 120
           ASAITVSNVIRRANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNA
Sbjct: 61  ASAITVSNVIRRANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNA 120

Query: 121 GNGYENNTGLLVAAVLAAIAHLCRVY 147
           GNGYENNTGLLVAAVLAAIAHLCRVY
Sbjct: 121 GNGYENNTGLLVAAVLAAIAHLCRVY 146

[Close]

BLAST of MELO3C012345 vs. NCBI nr
Match: gi|778706307|ref|XP_011655831.1| (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 9.9e-63
Identity = 130/152 (85.53%), Postives = 135/152 (88.82%), Query Frame = 1


Query: 3   RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSAS 62
           RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYT+K GKYGVTNQI+RRYS+S
Sbjct: 4   RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSS 63

Query: 63  AITVSNVIRR--------ANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQ 122
           AITVSNVIRR         +G AAAAGGGEN GGSRP TGGGTAVIPVYAAGSAQA HRQ
Sbjct: 64  AITVSNVIRRGSGSGGGGGSGSAAAAGGGEN-GGSRPRTGGGTAVIPVYAAGSAQAHHRQ 123

Query: 123 GRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY 147
           GR HNAGN YENN GLLVAAVLAAIAHLCRV+
Sbjct: 124 GRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

The following BLAST results are available for this feature:

BLAST of MELO3C012345 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUR6_CUCSA	6.9e-63	85.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1	[more]

BLAST of MELO3C012345 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091823\|ref\|XP_008446752.1\|	7.8e-76	100.00	PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo]	[more]
gi\|778706307\|ref\|XP_011655831.1\|	9.9e-63	85.53	PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47790	melon EST collection version 4.0	transcribed_cluster
MU59880	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012345T1	MELO3C012345T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47790	MU47790	transcribed_cluster
MU59880	MU59880	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012345	Csa5G613600	Cucumber (Chinese Long) v2	cumeB377
MELO3C012345	Cla020485	Watermelon (97103) v1	mewmB061
MELO3C012345	ClCG05G021850	Watermelon (Charleston Gray)	mewcgB062
MELO3C012345	Cla97C05G103540	Watermelon (97103) v2	mewmbB060
MELO3C012345	Bhi07G000630	Wax gourd	mewgoB081
MELO3C012345	CSPI05G26260	Wild cucumber (PI 183967)	cpimeB369
MELO3C012345	Cucsa.282660	Cucumber (Gy14) v1	cgymeB474
MELO3C012345	CmaCh04G014380	Cucurbita maxima (Rimu)	cmameB640
MELO3C012345	CmaCh18G009510	Cucurbita maxima (Rimu)	cmameB351
MELO3C012345	CmoCh18G009520	Cucurbita moschata (Rifu)	cmomeB344
MELO3C012345	Lsi04G001540	Bottle gourd (USVL1VR-Ls)	lsimeB281
MELO3C012345	Cp4.1LG01g14260	Cucurbita pepo (Zucchini)	cpemeB363
MELO3C012345	Cp4.1LG09g03730	Cucurbita pepo (Zucchini)	cpemeB024
MELO3C012345	Carg01899	Silver-seed gourd	carmeB0834
MELO3C012345	Carg18995	Silver-seed gourd	carmeB1019
MELO3C012345	CsaV3_5G035310	Cucumber (Chinese Long) v3	cucmeB381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012345	Cucurbita moschata (Rifu)	cmomeB631
MELO3C012345	Cucurbita moschata (Rifu)	cmomeB652
MELO3C012345	Watermelon (97103) v1	mewmB047
MELO3C012345	Bottle gourd (USVL1VR-Ls)	lsimeB463
MELO3C012345	Cucumber (Gy14) v2	cgybmeB319