Carg01899 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01899
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_003 : 1026228 .. 1028738 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTGTTATCACTCACAATCAAACAACAGTAAACCAGAAGAGTACAAACCGTGTCTTGAAGGGGCCTTCTTTCAGCAACAGTTTCAAAAAAAGATTCGAGTTCGTGTCTCTTTTTAAAAGGATGTCTTATTCTAACCACTCTTGTTCCGTGTCCGTGTTCGTGTCCTTAAAAGAGATAAGATAGCTTTAGTGGATCAAAAGAAGACTTCCCTGCCATTTTGTATAAGTATATCACACCATTCCTAACAGCCACATACAGAAGGATCTAGATCACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAGCAACAAATCCTCCCAACAGGTAACTATCCTTTCCAATCTCTCAACTAAAATTCAATTCACACAATTCTTCACAATTCTTCTCTCTTTATGTTCATGTCCTTTCCAATCTTTCGATCAAAATCCATTTTTTAGTGTATCGTTTTGAATACTATTCAATGAGTTCATCACAATATGGCTGTCGTAATAACCGTCAAGAAGTAATACCTATCAGACACATTGTGACAACCTAAACTAAAAAGATCATGAGTTCGCCTTTATTCTCTTTTCTTTAGAGGTGTAAAGGATATCAGAACAACCGTGAGAGGAAAAGGTAAATGTAAAATACTAAGATAGTTAAAGGTTAAATCGTTCCTAAGGTTAAGCTTAGTTTAGGTTAAATTGGGTAAATTTAAAATAGTAAGATAGGTTAAAGGTTAAATCATTCCTAAAGTTAAGCTTAGTTGAGTTTAAGTTAGGATAACTTAAATTATATCCATGTTTTTAACACTAATCAGCAACAAAGTGTGAAGTATATACGACAAAGTTGAATAATGAGACCGACAATAAAATAAAGTGTGCATTCCACAAACTGTGTGAATAAACGACAAATGTGCACAATTGCAGATGTGTTGAGAATAGTAATGTGGAAAAGGAAAGAATAAAAGGTAAATAGAAGAATATAGACGAGTGAGGAGTGCAAGTTATTATGTCTTTTATAATGTCAAATGAAAATAAATATATAAATAAAATAAAGTTTAAATGGAGGGCCATAACAATGTATGACTTTTCCACTAACTTTAACTTTTGGGAGTTAATATTTCAAATCAAATCAAAGGCTAGATGCTGCTAGTGACTAAAGTGATCAAATAATCAACTAATCCAACTAGTAAAATATTCATAATTTCTAATTTATTATTTTAATTAAATGGTAATATTAAATAGAAACAAAGGGATCAAATGATCAAGGTTTCATTTATTTTATGATATATATGATGCTTATATATATTTATATATATATATATGTTTGGTTGCAAAAATTTTAAGTTTTTTTAAAGTTCAAAATCTTGTGAAATAAGCTCTTCCCCATTCCTACTTTTTATTGTATTTAATTAGAGATTATATCCACTTATATTAAAAACCTCCAACTTGGTTAGAGAAGGATTAAAAAGGAGTTCGAAAAGAGAGTTAAAGAGTCTATTTTTTAAAAAAATGTCTCAAAATTCATTTCACTAATGATGATTTTTACCTTCAAAATGTTTATTTTATGTGAAATATCAGATAATTAAGCTTTTAAAATTACCACTAAATTCATTTCACGTAGTTTAAAATTAAAATGGGATTTAAATCAAATACAAGATTAGAAACTTATAAAGTGGGAATTTTTGGTGCCTCACTAGTGCATGCCATGAATAGAATATTCCTACACACTTCCCACGAAGAAATAAAGGGTCACCAAAAGAAAACTTACCACTAAATTCCTACGAAGAAATAAAGGGTCACATTTGTTAAGTAAGAAATGAAATTCATTATACCCCCATTCCTAAACCAGTTTCTATATGTATGCAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGCGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCTGCCATTGCTCATCTCCATTTAGTTTTCTGATATCAAGGCTGCTTCCATACAAGAACATTGTTAAATCTGTTGATTGAGGTGTGTGCTTCAGCTTTCTTGTTGGATCTTTCTTTCCTGTTAAGATCAAGAAAAGTGCATAATAAGTGGCTTGCAAATGATTGTATATACAGAGACAGAACCTCATAAACTCTTTTTTTGTTTGATAACTGTTGTATTGTACAGAGACAGTAGCCTTTTAATTGCGTCAATTACATGATTTCTGATTGGAAATGCAACAAAATTCTAC

mRNA sequence

TGATTGTTATCACTCACAATCAAACAACAGTAAACCAGAAGAGTACAAACCGTGTCTTGAAGGGGCCTTCTTTCAGCAACAGTTTCAAAAAAAGATTCGAGTTCGTGTCTCTTTTTAAAAGGATGTCTTATTCTAACCACTCTTGTTCCGTGTCCGTGTTCGTGTCCTTAAAAGAGATAAGATAGCTTTAGTGGATCAAAAGAAGACTTCCCTGCCATTTTGTATAAGTATATCACACCATTCCTAACAGCCACATACAGAAGGATCTAGATCACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAGCAACAAATCCTCCCAACAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGCGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCTGCCATTGCTCATCTCCATTTAGTTTTCTGATATCAAGGCTGCTTCCATACAAGAACATTGTTAAATCTGTTGATTGAGGTGTGTGCTTCAGCTTTCTTGTTGGATCTTTCTTTCCTGTTAAGATCAAGAAAAGTGCATAATAAGTGGCTTGCAAATGATTGTATATACAGAGACAGAACCTCATAAACTCTTTTTTTGTTTGATAACTGTTGTATTGTACAGAGACAGTAGCCTTTTAATTGCGTCAATTACATGATTTCTGATTGGAAATGCAACAAAATTCTAC

Coding sequence (CDS)

ATGGGAAGAAGAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAGCAACAAATCCTCCCAACAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGCGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCTGCCATTGCTCATCTCCATTTAGTTTTCTGA

Protein sequence

MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

Homology

[Close]

BLAST of Carg01899 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 8.3e-47
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSA 60
           MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSA
Sbjct: 1   MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSA 60

Query: 61  RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHY 120
           RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHY
Sbjct: 61  RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHY 120

Query: 121 ENNMGLLVASVLAAIAHLHLVF 143
           ENNMGLLVASVLAAIAHLHLVF
Sbjct: 121 ENNMGLLVASVLAAIAHLHLVF 142

[Close]

BLAST of Carg01899 vs. NCBI nr
Match: XP_022957462.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata])

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSA 60
           MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSA
Sbjct: 1   MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSA 60

Query: 61  RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHY 120
           RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHY
Sbjct: 61  RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHY 120

Query: 121 ENNMGLLVASVLAAIAHLHLVF 143
           ENNMGLLVASVLAAI HLHLVF
Sbjct: 121 ENNMGLLVASVLAAIVHLHLVF 142

[Close]

BLAST of Carg01899 vs. NCBI nr
Match: XP_022987717.1 (uncharacterized protein LOC111485159 [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 135/142 (95.07%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSA 60
           MGRRREL+LMFLLFCSTIPAISSA QQQILPTE NYHQKTNAEKHG+DGVTNRISSIYSA
Sbjct: 1   MGRRRELSLMFLLFCSTIPAISSARQQQILPTEPNYHQKTNAEKHGQDGVTNRISSIYSA 60

Query: 61  RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHY 120
           RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RQGR RNAGNHY
Sbjct: 61  RAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHRQGRPRNAGNHY 120

Query: 121 ENNMGLLVASVLAAIAHLHLVF 143
           ENNMGLLVASVLAAIAHLHLVF
Sbjct: 121 ENNMGLLVASVLAAIAHLHLVF 142

[Close]

BLAST of Carg01899 vs. NCBI nr
Match: XP_011655831.1 (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus] >KGN52182.1 hypothetical protein Csa_5G613600 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20
Identity = 96/154 (62.34%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 1   MGRRRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIY 60
           MGRRR + L+FLLFCST+   S+ALQQQI P  TESNY QKT  +KHGK GVTN+I+  Y
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY 60

Query: 61  SARAITV----------SQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           S+ AITV                  XXXXXXXXXXXXXXXXXXXXXXXX           
Sbjct: 61  SSSAITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAHH 120

Query: 121 RQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF 143
           RQGR  NAGN YENNMGLLVA+VLAAIAHL  VF
Sbjct: 121 RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]

BLAST of Carg01899 vs. NCBI nr
Match: XP_022945098.1 (uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 5.6e-19
Identity = 70/135 (51.85%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 4   RRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAI 63
           R+E+ L+F+LFCS +  I+S+L Q+ILPTESN HQKTN EKHG+DG TN+I    SA AI
Sbjct: 3   RKEMGLIFILFCSAMAIIASSL-QEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAI 62

Query: 64  TVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNHYENN 123
           TVSQ + HG      XXXXXX                        R+GR  NAG  +ENN
Sbjct: 63  TVSQAVAHGG----GXXXXXXVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENN 122

Query: 124 MGLLVASVLAAIAHL 139
           M LLVA+ LAAIAHL
Sbjct: 123 MWLLVAAALAAIAHL 132

[Close]

BLAST of Carg01899 vs. TrEMBL
Match: tr|A0A0A0KUR6|A0A0A0KUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 96/154 (62.34%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 1   MGRRRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIY 60
           MGRRR + L+FLLFCST+   S+ALQQQI P  TESNY QKT  +KHGK GVTN+I+  Y
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRY 60

Query: 61  SARAITV----------SQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           S+ AITV                  XXXXXXXXXXXXXXXXXXXXXXXX           
Sbjct: 61  SSSAITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAHH 120

Query: 121 RQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF 143
           RQGR  NAGN YENNMGLLVA+VLAAIAHL  VF
Sbjct: 121 RQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

[Close]

BLAST of Carg01899 vs. TrEMBL
Match: tr|A0A1S3BFU8|A0A1S3BFU8_CUCME (uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.4e-18
Identity = 90/144 (62.50%), Postives = 97/144 (67.36%), Query Frame = 0


Query: 4   RRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIYSAR 63
           RR + L+FLLFCST+   S+ALQQQI P  TESNY QKT   K GK GVTN+IS  YSA 
Sbjct: 3   RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSAS 62

Query: 64  AITVSQ---GIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGN 123
           AITVS          XXXXXXXXXXXXXXXXXXXXX              RQGR  NAGN
Sbjct: 63  AITVSNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVYAAGSAQARHRQGRPHNAGN 122

Query: 124 HYENNMGLLVASVLAAIAHLHLVF 143
            YENN GLLVA+VLAAIAHL  V+
Sbjct: 123 GYENNTGLLVAAVLAAIAHLCRVY 146

The following BLAST results are available for this feature:

BLAST of Carg01899 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517064.1	8.3e-47	100.00	glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957462.1	2.4e-46	99.30	glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]	[more]
XP_022987717.1	6.6e-44	95.07	uncharacterized protein LOC111485159 [Cucurbita maxima]	[more]
XP_011655831.1	6.7e-20	62.34	PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus] >KGN52182.1 hy...	[more]
XP_022945098.1	5.6e-19	51.85	uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg01899 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg01899 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01899 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUR6\|A0A0A0KUR6_CUCSA	4.4e-20	62.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1	[more]
tr\|A0A1S3BFU8\|A0A1S3BFU8_CUCME	5.4e-18	62.50	uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01899-RA	Carg01899-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36245	FAMILY NOT NAMED	coord: 1..133

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01899	Cla020485	Watermelon (97103) v1	carwmB0842
Carg01899	Csa5G613600	Cucumber (Chinese Long) v2	carcuB0857
Carg01899	MELO3C012345	Melon (DHL92) v3.5.1	carmeB0834
Carg01899	ClCG05G021850	Watermelon (Charleston Gray)	carwcgB0816
Carg01899	CSPI05G26260	Wild cucumber (PI 183967)	carcpiB0877
Carg01899	Cucsa.282660	Cucumber (Gy14) v1	carcgyB0968
Carg01899	CmaCh04G014380	Cucurbita maxima (Rimu)	carcmaB1170
Carg01899	CmaCh18G009510	Cucurbita maxima (Rimu)	carcmaB1167
Carg01899	CmoCh18G009520	Cucurbita moschata (Rifu)	carcmoB1135
Carg01899	CmoCh04G015090	Cucurbita moschata (Rifu)	carcmoB1138
Carg01899	Lsi04G001540	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01899	Cp4.1LG01g14260	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01899	Cp4.1LG09g03730	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01899	MELO3C012345.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01899	CsaV3_5G035310	Cucumber (Chinese Long) v3	carcucB0881
Carg01899	Cla97C05G103540	Watermelon (97103) v2	carwmbB0878
Carg01899	Bhi07G000630	Wax gourd	carwgoB0979

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01899	Carg18995	Silver-seed gourd	carcarB629

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01899	Cucumber (Gy14) v2	carcgybB0831
Carg01899	Cucurbita maxima (Rimu)	carcmaB1168
Carg01899	Cucurbita moschata (Rifu)	carcmoB1136
Carg01899	Cucurbita pepo (Zucchini)	carcpeB1176
Carg01899	Bottle gourd (USVL1VR-Ls)	carlsiB769
Carg01899	Watermelon (Charleston Gray)	carwcgB0819
Carg01899	Watermelon (97103) v1	carwmB0838