CmaCh04G014380.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G014380.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 7333695 .. 7337354 (+)
Sequence length777
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATAGTTATTGGACTTGGTGGCGGAGGAGGATCCGGTGGAGGAGGTCGTGGTGGCAGTGGAGGAGGATCCTCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCCCAGGACGAGGTCGTGGTGGTGGTGGGGGAGGATCCGCAGGAGGAGGTAGTGGCGGCGGGGGAGGATCCACCGGAGGAGGTAGTGGTGGCGGGGGAGGATCGGAAGGAGGAGGTCGTGGTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGGTTCATAGTAGCTGGAGTTTCGTCATCAGTTGCATATTTATTTAGACATATTTGAATTTGATTATGAAGACATATATACTCAAAATCATGAATAATTTGTTTGATAAAAGAAGCAAAATGGAGGCAATGGGACGGTGTCTAATTTGTTTGATTGATGTATTATGTATGTAATTTTGTGTTCATATTAACTCATTCTTTGGTTTTGGCTGGTGTTTTGCGATTCTACCCCTTTGTTCGACTCTAATTTTATTAAATACATGTTTGAATTTAAGTTTGGTGAGTACACGTCGGGGGTAAACAAATTAAACTAGGTTGAATTGGAAAAATCTTTTCGTTAGTGATATGAGTAATTTGAATAAAGCTCACAACCTAACTCAACTTGGATCGAGGTGGGTTGAATCCGATCGGTTGAATTAGTGACCCGAACAATTTAAATAGAGTTCACAAATTAGATTGGGTTGAATTGGGTTGGGTTGTTAGATTATTTTTTTTTCCTTCTAATTATTGAAAAAAATCATATTTATGTACCATACACATTACATTTTGATAATTATAATAAACATTGATTAAAAATATTAAATATTTGTAATCTTCGTGATAAACTTAAAGTAGGGTAGGGTTGACTTCAACTTTGTTACTCTATTATTAGTCCAACAAAAATAATGTTACTTTTCGACATGAATTTGAGTTAAAAAATTCAACCCAGCCCAAATTGAAATAATAAATAACTAAATAAATTCACCCAACTCAACTTTTATAATTTTGGTTGAATAGTCCAAATTAATCGAGTTCTTGGATCATATCAAATGAAATCAACCACAATTGTGTATTACTAACGGTTAAAATATTATAAATAATAATTACAAAGCTACTAACTTCCTCACAAATTAACCAAAATAGTTTAAGTAATTAATTTTAATTAATTAAGAATAGTTGAGCATAACAAGTTTCACCCAAATTTCATATATTGAGAACAGCAAACAAAACAACATCTGGAAGTAGTTTAGAGACATCAACCAATAAGACATCAAAATCAGACAAGATCAAATCAAATCAGATCTAAGATCGCCAGCCAACTAGAAACCAAAACCAAAATCAAAATCAAAATCAAACTCGAGATCGAGATCGAGATCGCGATCCAGACACCAACTGAGAAAAGGTTTCAGAATCATGGAAGAAGAACAGAAACCAAAGTTATCCTATTCAGTTTTGATTGTTATCACTCACAATCAAACAACAGTTAAACCAGAAGAGTAGAAACCGTGTCCTGAAGGGGCCTTCTTTCAGCAATAGTTTCAAAAAAAGATTCGAGTTCGTGTTTCTTTTTAAAAGGATGTCTTATTCTAACCACTCTTGTTCCGTGTCCGTGTTCGTGTCCTTAAAAGAGATAAGATAGCTTTAGTGGATCAAAAGAAGACTTCCCTGCCATTTTGTATAGGTATATCACACCATTCCTAACAGCCATATACAGAAGGATCTAGATAACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAAGCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCGCCAACAACAAATCCTCCCAACAGGTAACTATCCTTTCCAATCTCTCAACTAAGATTCAATTCACACAATTCTTCACAATTCTTCACGATTCTTCTCTTTATGTTAATATCCTTTCCAATCTTTCGATCAAAATTCATTTTTTAGTGTATCGTTCTAAATACTATTCAATGAGTTCATCACAATATGGCTGTCGTAATAACCGTCAAGAAGTAATACTTATCAGACACATTGTGACAACCTAAACTAAAAGGATCATAAGTTTGCCTTTATTCTCTTTTCTTTAGAGGTGTAAAGGAAGCTATCAGAACAACTATGAGAGGAAAAGGTAAATGTAGAATACTAAGATAGTTAAAGGTTAACTCATTCCTAAAGTTAAACTTAGTTGAGTTTAAGTTAGGATAACTTAAAATTATATCCATGTTTTTAACACTAATCAACAACAAAGTGTAAAGTATATACGACAAAGTTGAATAATGAGACCGACAATAAAATAAAGTGTGCATTCCATAAAATGTGTGTATAAACGACAAATTTGCACAATTGCAGATGTGTTGAGAATAGTAATGTGGAAAAGGAAAGAATAAAAGGTAAATAGAAGAATATAGACGAGTGAGGAGTGCAAGTTATTATGTCTTTTATAATGTCAAATGAAAATAAATATATAAATAAAATAAAGTTTAAATGGAGGGCCATAACAATGTATGACTTTTCCACTAACTTCAACTTTTGGGAGTTAATATTTCAAATCAAATCAAAGGCTAGATGCTGCTAGTGACTAAAGTGATCAAATAATCAACTAGTCCAACTAGTAAGATATTCATAATTTCTAATTTATTATTTTAATTAAATGGTAATATTTAATAGAAACAAAGGGATCAAATGATTAAGGTTTCATTTATATTATGATATATATGATGCTTATATATATTTATATATGTGTTTGGTTGCAAAAATTTAAAGTTTTTTAAAGTTCAAGAACTTGTGAAATAAGCTCTTCCCCATTCCTACTTTTAATTAGGGATTATATCGAGAGCTATAGAGTCTATTTAAAAAAAAAAATGTCCCAAAATTCATTTCACTAATGATGATTTTTACCTTCAAAATGTTTATTTTATGTGAAATATCAGATAATTAAGCTTAAAATTACCACTAAATTCATTTCACGAAAGTCGCCTTTTTAAATATTTAAAATAGTTTAAAATTAAAATGGGATTTAAATCAAATCCAAGATTAGAAACTTAAAAGAGGGAATTTTTGGTGCCTCACAAGTGCATGCCATGAATAGAATATTCCTACACACTTCCCACGAAGAAATAAAGGGTCACCAAAAGAAACTTACCACTAAATTCCTACCGTCAGTGTATTCTGTTGGGTGCGCTTCTTTTTCCAGTGACATTTTTTAAGCTTTAAAAATGAAATTCATTATACCCCCATTCCTAAGCCAGTTTCTATATGTATGCAGAGCCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCCAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGACCGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAGTTTTCTGA

mRNA sequence

ATGCACATAGTTATTGGACTTGGTGGCGGAGGAGGATCCGGTGGAGGAGGTCGTGGTGGCAGTGGAGGAGGATCCTCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCCCAGGACGAGGTCGTGGTGGTGGTGGGGGAGGATCCGCAGGAGGAGGTAGTGGCGGCGGGGGAGGATCCACCGGAGGAGGTAGTGGTGGCGGGGGAGGATCGGAAGGAGGAGGTCGTGGTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGCCATATACAGAAGGATCTAGATAACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAAGCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCGCCAACAACAAATCCTCCCAACAGTTTCTATATGTATGCAGAGCCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCCAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGACCGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAGTTTTCTGA

Coding sequence (CDS)

ATGCACATAGTTATTGGACTTGGTGGCGGAGGAGGATCCGGTGGAGGAGGTCGTGGTGGCAGTGGAGGAGGATCCTCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCCCAGGACGAGGTCGTGGTGGTGGTGGGGGAGGATCCGCAGGAGGAGGTAGTGGCGGCGGGGGAGGATCCACCGGAGGAGGTAGTGGTGGCGGGGGAGGATCGGAAGGAGGAGGTCGTGGTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGCCATATACAGAAGGATCTAGATAACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAAGCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCGCCAACAACAAATCCTCCCAACAGTTTCTATATGTATGCAGAGCCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCCAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGTGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGACCGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCCGCCATTGCTCATCTCCATTTAGTTTTCTGA

Protein sequence

MHIVIGLGGGGGSGGGGRGGSGGGSSGGGRGGGGGSPGRGRGGGGGGSAGGGSGGGGGSTGGGSGGGGGSEGGGRGGRGGAHSGTGNWHQNSMSHIQKDLDNTKPTCFYYYGKKKGAKLDVLAVLFYHTSHFICSPTTNPPNSFYMYAEPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF
Homology
[Close]
BLAST of CmaCh04G014380.1 vs. NCBI nr
Match: gi|659091823|ref|XP_008446752.1| (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 80/114 (70.18%), Postives = 85/114 (74.56%), Query Frame = 1 

Query: 149 EPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGI----GHGSAAGGGENGGGGRPQA 208
           E NY QKT   K G+ GVTN+IS  YSA AITVS  I    G  +AAGGGENGGG RP  
Sbjct: 34  ESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHT 93

Query: 209 GGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF 259
           GG G AVIPVYAAGSAQA HRQGRP NAGN YENN GLLVA+VLAAIAHL  V+
Sbjct: 94  GG-GTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY 146

[Close]
BLAST of CmaCh04G014380.1 vs. NCBI nr
Match: gi|778706307|ref|XP_011655831.1| (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 88/159 (55.35%), Postives = 102/159 (64.15%), Query Frame = 1 

Query: 112 GKKKGAKLDVLAVLFYHTSHFICSPTTNPPNSFYMYAEPNYHQKTNAEKHGQDGVTNRIS 171
           G+++G +L  + +LF  T     S        F    E NY QKT  +KHG+ GVTN+I+
Sbjct: 2   GRRRGIRL--IFLLFCST--LAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQIN 61

Query: 172 SIYSARAITVSQ------------GIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGS 231
             YS+ AITVS             G G  +AAGGGENGG  RP+ GG G AVIPVYAAGS
Sbjct: 62  RRYSSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGENGGS-RPRTGG-GTAVIPVYAAGS 121

Query: 232 AQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF 259
           AQAHHRQGR  NAGN YENNMGLLVA+VLAAIAHL  VF
Sbjct: 122 AQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

The following BLAST results are available for this feature:
BLAST of CmaCh04G014380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014380.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091823|ref|XP_008446752.1|1.2e-2670.18PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo][more]
gi|778706307|ref|XP_011655831.1|1.5e-2655.35PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G014380CmaCh04G014380gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G014380.1CmaCh04G014380.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G014380.1.exon.1CmaCh04G014380.1.exon.1exon
CmaCh04G014380.1.exon.2CmaCh04G014380.1.exon.2exon
CmaCh04G014380.1.exon.3CmaCh04G014380.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G014380.1.CDS.1CmaCh04G014380.1.CDS.1CDS
CmaCh04G014380.1.CDS.2CmaCh04G014380.1.CDS.2CDS
CmaCh04G014380.1.CDS.3CmaCh04G014380.1.CDS.3CDS