CmaCh03G009120 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G009120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L7/L12
Location	Cma_Chr03 : 6612032 .. 6612538 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTTGGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTGAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCTGCCGAAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACCAGTTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCCACTGCGGTACTGGAATGA

mRNA sequence

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTTGGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTGAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCTGCCGAAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACCAGTTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCCACTGCGGTACTGGAATGA

Coding sequence (CDS)

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTTGGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTGAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCTGCCGAAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACCAGTTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCCACTGCGGTACTGGAATGA

Protein sequence

MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE

Homology

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BLAST of CmaCh03G009120 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-15
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 40  LERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I +++  LT ++  + +     + G++   P     SA G +AA  A       EKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAVA-------EKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

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BLAST of CmaCh03G009120 vs. Swiss-Prot
Match: RL7_THEM4 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) GN=rplL PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-15
Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = 1


Query: 38  QKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE 97
           +KLE+I +E+  LT  E  +   +   K G++   P V  +   G+AA G A+AE    E
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAP-VMAMPVAGAAAGGGAAAE----E 61

Query: 98  KTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKV---PVVLKKGVTKDQGNPI 157
           KT FD+ L+ F  A KI +IK VR  T LGLKEAKDLVEK      V+K+GV KD+   I
Sbjct: 62  KTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEI 121

Query: 158 IEKLKELGATAVLE 169
            +KL+E GA   L+
Sbjct: 122 KKKLEEAGAEVELK 129

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BLAST of CmaCh03G009120 vs. Swiss-Prot
Match: RL7_PROM4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1


Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEA 96
           ++K + I D +  L+ +E  +         G++    A   ++APG+    SA+ EA E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

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BLAST of CmaCh03G009120 vs. Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 48/130 (36.92%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 39  KLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEK 98
           K + I + +  L+ +E  +         G++    A   ++APG+AA G     A+E  K
Sbjct: 4   KTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAEE--K 63

Query: 99  TVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 158
           T FD+ LE FDAAAKIK++K VR  T LGL +AK LVE  P  +K+G++KD+   + +++
Sbjct: 64  TEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEI 123

Query: 159 KELGATAVLE 169
           +E+G    L+
Sbjct: 124 EEVGGKVTLK 131

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BLAST of CmaCh03G009120 vs. Swiss-Prot
Match: RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-14
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 40  LERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I +++  LT I+  + +     + G++         SAP +A A +   +   AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVSA--------SAPVAAVAPAVXXDVAVAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ T LGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

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BLAST of CmaCh03G009120 vs. TrEMBL
Match: A0A0A0KLI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.0e-74
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of CmaCh03G009120 vs. TrEMBL
Match: F6HWW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 124/170 (72.94%), Postives = 141/170 (82.94%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SI +++P K LVR L  A    L  + +T     TQKLERIADE+LDLTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL++  SA+AGS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFT LGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]

BLAST of CmaCh03G009120 vs. TrEMBL
Match: A0A067KAN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.2e-52
Identity = 126/175 (72.00%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSL------STVSEERTQKLERIADEMLDLTKIE 60
           M SIA K+ +K L+RLL   S+P+  RSL      S+VSE +TQKLERIAD++LDL KIE
Sbjct: 1   MHSIAVKMHSKTLIRLLNFTSKPIS-RSLCTASTTSSVSETQTQKLERIADQLLDLNKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE-KTVFDIKLEKFDAAAK 120
           RHDYA+LFR KMG +++ PA+SG    GSAAAGS  A AK AE KT FDIKLEKFDAAAK
Sbjct: 61  RHDYAVLFRHKMGFHRHSPALSGAVLSGSAAAGSGPAAAKPAEEKTAFDIKLEKFDAAAK 120

Query: 121 IKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKIIKEVRTFT LGLKEAKDLVEKVPVVLKKGVTK++ NPIIEKLKELGAT VLE
Sbjct: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKEEANPIIEKLKELGATVVLE 174

[Close]

BLAST of CmaCh03G009120 vs. TrEMBL
Match: M5XML3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012547mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.0e-51
Identity = 113/168 (67.26%), Postives = 142/168 (84.52%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           MS++ +K+  +++ R +T  SRP    + +T +E +TQKLERIADE+L+LTKIERHDY+I
Sbjct: 1   MSNVTTKVLCRSVSRFVTALSRPF--STATTANETQTQKLERIADELLNLTKIERHDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLN+YGPA+SG+  P S+ +GSAS +AK  EKT FDIK+EKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNRYGPAISGIG-PTSSESGSASTDAKAVEKTAFDIKIEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAK+LVEKVPVV+KKG+TK++  PI++KLKELGAT VLE
Sbjct: 121 RTFTDLGLKEAKELVEKVPVVVKKGLTKEEAGPIVDKLKELGATVVLE 165

[Close]

BLAST of CmaCh03G009120 vs. TrEMBL
Match: W9SMR4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_000205 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.0e-51
Identity = 122/173 (70.52%), Postives = 137/173 (79.19%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVS----EERTQKLERIADEMLDLTKIERH 60
           MSSIA+K+P       +  A+  L   SLST +    E R+QKLERIADE+LDLTK+ERH
Sbjct: 1   MSSIATKIPTTTRFLPMLFATNLLSRASLSTATAAGTESRSQKLERIADELLDLTKLERH 60

Query: 61  DYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASA-EAKEAEKTVFDIKLEKFDAAAKIK 120
           DYA+LFRLKMGL++YGPAVS    P S  +G A A EAK AEKT FDIKLEKFDAAAKIK
Sbjct: 61  DYAVLFRLKMGLDRYGPAVSTAPGPASGGSGEAGAGEAKAAEKTAFDIKLEKFDAAAKIK 120

Query: 121 IIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IIKEVR+FT LGLKEAKDLVEKVPVVLKKGVTK++  PIIEKLKELGAT VLE
Sbjct: 121 IIKEVRSFTDLGLKEAKDLVEKVPVVLKKGVTKEEAGPIIEKLKELGATVVLE 173

[Close]

BLAST of CmaCh03G009120 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 150.6 bits (379), Expect = 8.6e-37
Identity = 81/135 (60.00%), Postives = 103/135 (76.30%), Query Frame = 1


Query: 34  EERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEA 93
           E RT+KLERIAD++L L +IE +DY++LF  K+GLN+YG AV+     GS    SAS E 
Sbjct: 36  EARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVA---VTGSVGDASASTET 95

Query: 94  KEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNP 153
           K AEKT FD+KLEKF+AA+KIK+IKE+R FT LGLKEAK LVEK PV++K G+TK++   
Sbjct: 96  KTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEK 155

Query: 154 IIEKLKELGATAVLE 169
           I+EKLK +GA   LE
Sbjct: 156 IMEKLKAVGAIVALE 167

[Close]

BLAST of CmaCh03G009120 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 73/161 (45.34%), Postives = 103/161 (63.98%), Query Frame = 1


Query: 14  VRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKY-- 73
           V+L T+ SR     S +T SE     + +I +E+ +LT +E  D   + R K+ +++   
Sbjct: 25  VQLFTIQSRSY--SSPATQSEN----VSKIVNELSNLTLLETMDLTEILRQKLNISELPV 84

Query: 74  -GPAVSGLSAPGSAAAGSASAEAKEAEK---TVFDIKLEKFDAAAKIKIIKEVRTFTSLG 133
               + G+S PGS A+ SA  E KE +K   T FD+ L+ +DA +KIK+IKEVRT T+LG
Sbjct: 85  MAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALG 144

Query: 134 LKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LKEAKDLVEK P +LKKGV+K++   IIEKLK +GA   +E
Sbjct: 145 LKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of CmaCh03G009120 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 1


Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FT LGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of CmaCh03G009120 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-22
Identity = 63/133 (47.37%), Postives = 86/133 (64.66%), Query Frame = 1


Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVS-GLSAPGSAAAGSASAEAKE 96
           + K+  +A+ +  L+  ER          + L K     S G+ A     AG+     ++
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNVE---EK 116

Query: 97  AEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPII 156
            EKT FD+KLEKF+A+ KIK+IKEVRTFTSLGLKEAK+LVEKVP +LK+GVTK++ N II
Sbjct: 117 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 176

Query: 157 EKLKELGATAVLE 169
            K+K +G  AV+E
Sbjct: 177 AKIKAVGGIAVME 186

[Close]

BLAST of CmaCh03G009120 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-18
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 86  AGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKG 145
           +G  + E  +AEKTVF++KLE F+A AKIKIIKEVR    +GLKEA  LV K P VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 146 VTKDQGNPIIEKLKELGATAVLE 169
           ++K++G  ++EKL  LGA AVL+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]

BLAST of CmaCh03G009120 vs. NCBI nr
Match: gi|449448220|ref|XP_004141864.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of CmaCh03G009120 vs. NCBI nr
Match: gi|659079707|ref|XP_008440399.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 9.2e-73
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLT+A RPLLVRSLSTV+EERTQKLERIADE+LDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of CmaCh03G009120 vs. NCBI nr
Match: gi|1009145413|ref|XP_015890323.1| (PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba])

HSP 1 Score: 217.2 bits (552), Expect = 2.1e-53
Identity = 127/176 (72.16%), Postives = 147/176 (83.52%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVAS---RPLLVRSL---STVSEERTQKLERIADEMLDLTKIE 60
           MSS+ +K+P+++LVRL    S   RP L R+L   +  +E RTQKLERIADE+LDLTKIE
Sbjct: 1   MSSLTTKIPSRSLVRLFAPTSATPRPPLSRTLCAPTASTETRTQKLERIADELLDLTKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAA 120
           R+DY ILFRLKMGLN+YGPAVS  S+ GSA+AGS SA  +AK AEKT FDIKLEKFDAAA
Sbjct: 61  RYDYTILFRLKMGLNRYGPAVSAPSSTGSASAGSGSASGDAKVAEKTAFDIKLEKFDAAA 120

Query: 121 KIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           KIKIIKEVRTFT LGLKEAK+LVEKVPVVLKKG+TK++  PI+EKLKELGAT VLE
Sbjct: 121 KIKIIKEVRTFTDLGLKEAKELVEKVPVVLKKGLTKEEAGPIVEKLKELGATVVLE 176

[Close]

BLAST of CmaCh03G009120 vs. NCBI nr
Match: gi|225468320|ref|XP_002271482.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-52
Identity = 124/170 (72.94%), Postives = 141/170 (82.94%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SI +++P K LVR L  A    L  + +T     TQKLERIADE+LDLTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL++  SA+AGS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFT LGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]

BLAST of CmaCh03G009120 vs. NCBI nr
Match: gi|802645979|ref|XP_012079421.1| (PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas])

HSP 1 Score: 211.8 bits (538), Expect = 8.9e-52
Identity = 126/175 (72.00%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSL------STVSEERTQKLERIADEMLDLTKIE 60
           M SIA K+ +K L+RLL   S+P+  RSL      S+VSE +TQKLERIAD++LDL KIE
Sbjct: 1   MHSIAVKMHSKTLIRLLNFTSKPIS-RSLCTASTTSSVSETQTQKLERIADQLLDLNKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE-KTVFDIKLEKFDAAAK 120
           RHDYA+LFR KMG +++ PA+SG    GSAAAGS  A AK AE KT FDIKLEKFDAAAK
Sbjct: 61  RHDYAVLFRHKMGFHRHSPALSGAVLSGSAAAGSGPAAAKPAEEKTAFDIKLEKFDAAAK 120

Query: 121 IKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKIIKEVRTFT LGLKEAKDLVEKVPVVLKKGVTK++ NPIIEKLKELGAT VLE
Sbjct: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKEEANPIIEKLKELGATVVLE 174

The following BLAST results are available for this feature:

BLAST of CmaCh03G009120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL7_LIBAF	5.1e-15	40.63	50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1	[more]
RL7_THEM4	8.7e-15	44.03	50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI...	[more]
RL7_PROM4	1.9e-14	37.12	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl...	[more]
RL7_SYNPX	5.7e-14	36.92	50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 S...	[more]
RL7_LIBAC	9.7e-14	39.84	50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL P...	[more]

BLAST of CmaCh03G009120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLI9_CUCSA	2.0e-74	94.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1	[more]
F6HWW7_VITVI	1.6e-52	72.94	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=...	[more]
A0A067KAN8_JATCU	6.2e-52	72.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1	[more]
M5XML3_PRUPE	4.0e-51	67.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012547mg PE=4 SV=1	[more]
W9SMR4_9ROSA	9.0e-51	70.52	50S ribosomal protein OS=Morus notabilis GN=L484_000205 PE=3 SV=1	[more]

BLAST of CmaCh03G009120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37660.1	8.6e-37	60.00	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT4G36420.1	2.0e-25	45.34	Ribosomal protein L12 family protein	[more]
AT1G70190.1	1.1e-23	45.77	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ...	[more]
AT3G06040.1	2.7e-22	47.37	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT2G03130.1	4.0e-18	56.63	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]

BLAST of CmaCh03G009120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448220\|ref\|XP_004141864.1\|	2.9e-74	94.64	PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus]	[more]
gi\|659079707\|ref\|XP_008440399.1\|	9.2e-73	92.86	PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo]	[more]
gi\|1009145413\|ref\|XP_015890323.1\|	2.1e-53	72.16	PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba]	[more]
gi\|225468320\|ref\|XP_002271482.1\|	2.4e-52	72.94	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera]	[more]
gi\|802645979\|ref\|XP_012079421.1\|	8.9e-52	72.00	PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013823	Ribosomal_L7/L12_C
IPR014719	Ribosomal_L7/12_C/ClpS-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0022900	electron transport chain
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006839	mitochondrial transport
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G009120.1	CmaCh03G009120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 102..162 score: 3.0
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 101..167 score: 1.2
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 95..167 score: 7.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	unknown	SSF54736	ClpS-like	coord: 97..167 score: 4.53
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 35..168 score: 3.0
None	No IPR available	PANTHER	PTHR24089:SF375	SUBFAMILY NOT NAMED	coord: 35..168 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G009120	Cla014033	Watermelon (97103) v1	cmawmB632
CmaCh03G009120	Csa6G495700	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G009120	MELO3C007639	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G009120	ClCG01G017620	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G009120	CSPI06G28950	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G009120	CmoCh07G006560	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G009120	Lsi01G008900	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G009120	Cp4.1LG19g10700	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G009120	MELO3C007639.2	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G009120	CsaV3_6G044160	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G009120	Cla97C01G016790	Watermelon (97103) v2	cmawmbB670
CmaCh03G009120	Bhi03G000797	Wax gourd	cmawgoB0798
CmaCh03G009120	CsGy6G028420	Cucumber (Gy14) v2	cgybcmaB831

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G009120	Silver-seed gourd	carcmaB0003
CmaCh03G009120	Silver-seed gourd	carcmaB0567
CmaCh03G009120	Silver-seed gourd	carcmaB0633
CmaCh03G009120	Silver-seed gourd	carcmaB1070
CmaCh03G009120	Cucumber (Chinese Long) v3	cmacucB0778
CmaCh03G009120	Cucumber (Chinese Long) v3	cmacucB0800
CmaCh03G009120	Watermelon (97103) v2	cmawmbB701
CmaCh03G009120	Wax gourd	cmawgoB0781
CmaCh03G009120	Cucurbita maxima (Rimu)	cmacmaB063
CmaCh03G009120	Cucurbita maxima (Rimu)	cmacmaB186
CmaCh03G009120	Cucurbita maxima (Rimu)	cmacmaB421
CmaCh03G009120	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G009120	Cucumber (Gy14) v1	cgycmaB0231
CmaCh03G009120	Cucumber (Gy14) v1	cgycmaB0966
CmaCh03G009120	Cucumber (Gy14) v1	cgycmaB1092
CmaCh03G009120	Cucurbita moschata (Rifu)	cmacmoB632
CmaCh03G009120	Cucurbita moschata (Rifu)	cmacmoB634
CmaCh03G009120	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G009120	Wild cucumber (PI 183967)	cmacpiB658
CmaCh03G009120	Wild cucumber (PI 183967)	cmacpiB680
CmaCh03G009120	Cucumber (Chinese Long) v2	cmacuB651
CmaCh03G009120	Cucumber (Chinese Long) v2	cmacuB671
CmaCh03G009120	Melon (DHL92) v3.5.1	cmameB596
CmaCh03G009120	Melon (DHL92) v3.5.1	cmameB607
CmaCh03G009120	Watermelon (Charleston Gray)	cmawcgB603
CmaCh03G009120	Watermelon (97103) v1	cmawmB619
CmaCh03G009120	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G009120	Cucurbita pepo (Zucchini)	cmacpeB684
CmaCh03G009120	Bottle gourd (USVL1VR-Ls)	cmalsiB613
CmaCh03G009120	Bottle gourd (USVL1VR-Ls)	cmalsiB621
CmaCh03G009120	Cucumber (Gy14) v2	cgybcmaB241
CmaCh03G009120	Cucumber (Gy14) v2	cgybcmaB536
CmaCh03G009120	Melon (DHL92) v3.6.1	cmamedB680
CmaCh03G009120	Melon (DHL92) v3.6.1	cmamedB691